genome.fa.s5.2.7.7.80.10.50.1000.171.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  171  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51311773--51311813	19	2.2	19	87	12	59	46	0	24	29	1.53
51317566--51317611	19	2.4	18	82	10	56	19	23	13	43	1.86
51325840--51326027	44	4.3	43	64	17	107	31	20	22	25	1.98
51325713--51326104	133	2.9	134	92	0	624	31	20	21	26	1.98
51325954--51326513	177	3.2	177	89	2	838	29	21	22	26	1.99
51326418--51326513	44	2.2	44	84	0	120	26	21	26	26	2.00
51326808--51326866	31	2.0	31	83	6	77	27	38	15	18	1.91
51341929--51342041	38	2.9	38	89	2	154	22	24	27	25	2.00
51341945--51342052	38	2.8	38	91	0	162	20	24	27	27	1.99
51342045--51342249	43	4.8	43	89	2	313	11	23	32	32	1.91
51342226--51342256	16	1.9	16	93	0	53	12	29	29	29	1.94
51345725--51346084	47	7.7	45	74	12	271	28	18	28	24	1.98
51345725--51346085	94	3.9	93	79	7	392	28	18	28	24	1.98
51345725--51346085	141	2.6	137	80	9	408	28	18	28	24	1.98
51361715--51361979	46	5.7	45	73	10	178	28	19	29	22	1.98
51363962--51364072	47	2.4	47	83	6	145	35	22	16	26	1.95
51364836--51364864	4	7.2	4	100	0	58	0	24	0	75	0.80
51367199--51367231	17	2.0	17	94	5	59	72	9	0	18	1.10
51367353--51367418	33	2.0	34	85	8	91	81	4	4	9	0.96
51367361--51367414	8	6.5	8	79	12	56	81	3	3	11	0.95
51371775--51372758	171	5.7	171	84	5	1209	30	17	25	26	1.97
51372039--51372633	44	13.5	44	66	14	194	29	17	25	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51372124--51372637	181	2.9	181	89	1	757	29	17	25	27	1.97
51372739--51372854	45	2.6	45	87	0	160	25	16	28	29	1.97
51374532--51374590	15	3.5	15	72	24	55	32	5	1	61	1.28
51374528--51374628	36	2.8	36	90	4	150	31	6	2	58	1.40
51374545--51374602	18	3.2	19	68	26	61	34	6	3	55	1.44
51380162--51380218	30	1.9	30	85	0	78	28	22	7	42	1.80
51389026--51389057	11	2.8	12	86	13	50	68	0	0	31	0.90
51394442--51394489	15	3.2	15	71	11	53	41	8	22	27	1.82
51394436--51394499	30	2.1	31	91	2	103	40	6	26	26	1.79
51398555--51398697	15	9.5	15	76	11	150	43	6	18	30	1.77
51398555--51398731	30	5.9	30	97	2	320	41	6	21	30	1.79
51403140--51403230	21	4.3	20	81	10	94	2	46	19	31	1.62
51405046--51405080	10	3.4	10	92	7	61	34	17	17	31	1.93
51405041--51405080	21	1.9	21	94	0	71	37	17	15	30	1.90
51405040--51405092	21	2.5	20	84	3	70	37	16	13	32	1.88
51405390--51405465	31	2.5	31	91	0	116	30	17	27	25	1.97
51407856--51408117	80	3.3	80	85	5	327	24	19	28	27	1.99
51407856--51408087	40	5.8	40	90	1	340	23	20	28	27	1.99
51408071--51408168	51	1.9	52	91	2	162	24	22	25	27	2.00
51408946--51408985	20	2.0	20	100	0	80	30	15	10	45	1.78
51409738--51409766	14	2.1	14	93	6	51	58	6	0	34	1.25
51418578--51418869	56	5.6	54	75	15	258	35	2	13	47	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51418518--51418665	74	2.0	74	88	2	217	34	3	13	48	1.59
51418605--51418704	29	3.5	28	77	15	116	35	5	15	45	1.68
51418634--51418914	74	3.8	74	97	0	528	35	2	13	48	1.54
51418518--51418795	130	2.1	130	91	2	443	35	2	14	47	1.58
51418717--51418779	29	2.1	31	85	8	85	31	1	14	52	1.51
51419035--51419253	105	2.1	105	89	1	332	55	4	5	35	1.42
51423822--51423875	16	3.8	16	70	27	57	48	3	9	38	1.53
51424108--51424237	7	18.1	7	68	13	68	29	36	5	29	1.79
51424074--51424224	71	2.1	71	98	0	293	29	36	5	27	1.81
51424109--51424159	22	2.3	23	79	3	59	27	41	5	25	1.78
51424283--51424316	15	2.4	14	90	5	50	41	29	2	26	1.70
51424283--51424316	7	4.7	7	85	7	50	41	29	2	26	1.70
51424336--51424375	15	2.7	14	84	7	53	47	35	0	17	1.48
51424333--51424390	22	2.6	22	77	0	62	46	31	0	22	1.52
51424334--51424451	14	8.0	14	69	10	56	46	29	0	23	1.53
51424749--51424904	41	3.8	41	86	0	197	26	19	22	30	1.98
51424969--51425073	39	2.6	38	86	10	138	19	24	22	33	1.97
51426429--51426485	19	2.8	19	75	17	53	54	1	0	43	1.10
51426453--51426503	17	3.1	17	70	16	52	56	0	0	43	0.99
51426451--51426500	26	2.0	26	85	11	70	54	0	0	46	1.00
51426589--51426627	17	2.4	17	86	4	53	28	0	5	66	1.12
51432400--51432575	46	3.8	45	75	10	176	21	19	29	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51432396--51432567	93	1.8	93	89	0	272	20	20	30	28	1.98
51435293--51435327	16	2.1	17	94	5	63	25	0	2	71	1.00
51437084--51437122	20	2.0	19	85	5	51	71	0	5	23	1.05
51437209--51437332	53	2.4	53	77	6	137	35	16	12	35	1.87
51444405--51444457	14	3.8	14	84	0	70	41	9	16	32	1.81
51452920--51452975	28	2.0	28	100	0	112	53	7	14	25	1.66
51453512--51453537	12	2.2	12	100	0	52	42	15	34	7	1.75
51458261--51458318	30	2.0	30	89	3	91	27	18	24	29	1.98
51467772--51467812	15	2.7	15	78	14	57	60	9	17	12	1.57
51470784--51470954	93	1.8	93	91	0	279	28	28	21	21	1.99
51470779--51470947	46	3.7	46	75	13	175	29	27	20	22	1.98
51481574--51481799	33	6.5	33	67	24	117	21	18	26	33	1.97
51481536--51481771	102	2.3	102	90	2	368	22	18	26	32	1.97
51488215--51488281	34	1.9	35	87	3	100	44	14	8	31	1.76
51497842--51497882	21	2.0	21	90	0	64	19	29	21	29	1.98
51502813--51502902	39	2.2	40	86	7	121	37	2	5	54	1.36
51505779--51505806	13	2.2	13	100	0	56	28	7	7	57	1.52
51505979--51506034	18	2.9	19	84	12	71	53	3	1	41	1.29
51506077--51506108	16	2.0	16	93	0	55	53	0	3	43	1.16
51512649--51512682	17	2.0	17	88	0	50	64	8	0	26	1.22
51521778--51521858	41	2.0	41	97	0	153	30	28	11	29	1.91
51525474--51525525	24	2.2	24	82	6	61	23	36	25	15	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51540619--51540656	20	1.9	20	89	10	60	18	0	15	65	1.27
51544372--51544398	13	2.1	13	100	0	54	44	0	0	55	0.99
51546892--51546944	27	2.0	26	96	0	88	50	7	22	16	1.70
51548624--51548683	30	2.0	30	93	0	102	16	38	18	26	1.92
51555751--51555784	17	1.9	18	94	5	61	17	14	0	67	1.23
51564091--51564131	21	2.0	21	90	0	64	29	21	29	19	1.98
51580748--51580778	5	6.2	5	100	0	62	19	61	19	0	1.35
51581529--51581574	24	1.9	24	86	8	67	43	2	4	50	1.34
51581539--51581585	24	2.0	23	83	8	58	44	2	2	51	1.25
51586077--51586114	14	2.7	14	95	0	67	50	15	18	15	1.79
51600424--51600448	11	2.3	11	100	0	50	52	0	0	48	1.00
51603738--51603859	64	1.9	63	86	6	176	51	9	5	33	1.57
51605387--51605497	55	2.0	55	91	0	177	38	9	14	37	1.78
51606442--51606590	73	2.0	73	98	0	289	48	12	13	26	1.77
51607262--51607300	20	1.9	21	89	5	62	28	0	2	69	1.02
51609457--51609493	18	2.0	19	89	5	58	40	5	0	54	1.24
51611926--51612029	52	2.0	52	96	0	190	21	13	46	19	1.84
51615532--51615585	19	2.8	19	83	8	65	40	24	11	24	1.87
51617147--51617219	22	3.5	21	68	14	53	47	2	2	46	1.31
51628551--51628613	30	2.1	30	82	2	74	53	6	7	31	1.55
51633433--51633458	2	13.0	2	100	0	52	50	50	0	0	1.00
51638205--51638293	42	2.1	42	91	0	142	17	29	26	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51640294--51640359	22	3.0	22	73	8	71	39	18	24	18	1.92
51640343--51640397	25	2.2	25	86	0	74	38	21	23	16	1.93
51643416--51643505	34	2.6	35	75	7	103	16	22	27	33	1.95
51643349--51643584	74	3.3	73	75	11	214	21	21	24	32	1.98
51643408--51643588	35	5.1	35	70	10	118	20	20	24	33	1.97
51646485--51646561	24	3.2	24	70	14	59	16	28	19	35	1.94
51646624--51646674	27	2.0	26	88	7	77	19	25	21	33	1.97
51646622--51646767	24	5.8	23	69	15	69	17	27	20	34	1.95
51648329--51648424	25	3.9	25	81	11	92	29	21	28	20	1.98
51648339--51648424	25	3.5	24	81	10	93	29	22	27	20	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185