genome.fa.s5.2.7.7.80.10.50.1000.103.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  103  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32436668--32436716	24	2.0	24	100	0	98	28	12	24	34	1.91
32439698--32439735	16	2.4	16	86	0	58	2	21	2	73	1.07
32447372--32447439	28	2.5	27	76	11	66	25	27	14	32	1.95
32447427--32447527	27	3.7	27	81	1	112	32	22	10	33	1.89
32449213--32449356	41	3.5	41	91	0	216	31	23	18	26	1.98
32450118--32450608	246	2.0	246	100	0	982	43	13	6	37	1.68
32450427--32451678	626	2.0	626	99	0	2479	38	19	7	34	1.80
32462134--32462179	3	15.0	3	82	13	58	32	2	0	65	1.05
32462134--32462178	15	3.0	15	84	9	65	33	2	0	64	1.06
32462207--32462288	22	3.6	23	77	6	87	32	7	6	53	1.53
32465534--32465558	13	1.9	13	100	0	50	12	24	24	40	1.88
32465493--32465599	54	2.0	54	88	0	160	16	23	20	39	1.92
32465547--32465635	41	2.1	41	83	10	108	19	21	20	39	1.93
32475320--32475351	6	5.5	6	96	3	57	87	0	12	0	0.54
32477060--32477156	47	2.1	47	98	0	185	38	9	9	43	1.69
32480990--32481460	244	1.9	244	93	0	816	43	12	15	28	1.84
32496473--32496648	35	5.1	35	72	9	137	36	24	20	18	1.95
32496470--32496693	69	3.2	69	85	0	286	33	24	22	20	1.97
32496731--32496777	20	2.4	21	86	10	64	42	19	0	38	1.51
32502013--32503082	534	2.0	534	100	0	2140	35	12	16	36	1.85
32511975--32512012	19	2.0	19	94	0	67	57	10	7	23	1.58
32512239--32512280	15	2.7	16	82	10	52	59	9	23	7	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32515833--32515874	15	2.7	16	82	10	52	59	9	23	7	1.53
32526156--32526228	31	2.4	31	90	4	112	61	0	4	34	1.15
32529758--32529893	55	2.4	56	84	6	168	48	5	0	45	1.30
32549347--32549395	25	2.0	25	91	0	80	32	18	20	28	1.96
32560423--32560511	18	4.9	18	85	0	97	31	21	13	33	1.92
32560421--32560511	36	2.5	36	83	0	119	30	20	14	34	1.93
32576029--32576069	18	2.3	18	87	8	57	58	2	0	39	1.11
32576800--32576843	20	2.2	20	88	8	63	65	0	0	34	0.93
32578171--32578227	30	1.9	30	89	7	89	36	1	1	59	1.18
32578235--32578285	10	5.4	9	76	15	50	33	0	0	66	0.92
32578241--32578287	20	2.3	20	85	10	60	31	0	0	68	0.90
32578233--32578294	20	3.2	19	72	18	56	38	0	0	61	0.96
32588946--32589007	21	3.0	21	88	4	83	17	25	14	41	1.88
32596604--32596663	21	3.0	21	80	4	70	16	23	18	41	1.90
32602337--32602379	11	3.8	11	80	17	52	65	2	2	30	1.18
32604173--32604231	26	2.3	26	84	0	73	40	10	15	33	1.81
32604379--32604524	73	2.0	73	100	0	292	31	20	26	21	1.98
32606097--32606205	30	3.6	30	78	9	114	31	2	19	46	1.64
32618779--32618822	21	2.0	22	82	4	54	38	15	6	38	1.75
32618773--32618824	21	2.5	20	75	9	50	40	17	7	34	1.78
32630332--32630400	5	13.8	5	100	0	138	39	0	20	40	1.52
32635304--32635340	19	1.9	19	100	0	74	27	10	29	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32641886--32642018	68	2.0	67	93	1	230	41	14	13	30	1.84
32643995--32644038	23	1.9	23	95	0	79	36	18	6	38	1.77
32644916--32644965	25	2.0	25	96	0	91	24	26	8	42	1.82
32645557--32645647	27	3.1	29	86	10	123	12	39	0	46	1.41
32651264--32651582	50	6.4	50	81	3	372	26	21	30	22	1.99
32651264--32651582	100	3.2	98	87	4	424	26	21	30	22	1.99
32656255--32656322	24	3.1	24	65	30	69	41	19	5	33	1.75
32662720--32662822	51	2.0	51	94	3	181	39	21	10	28	1.86
32664670--32664704	14	2.5	14	90	0	52	62	8	2	25	1.38
32666826--32666929	25	4.2	24	73	8	70	23	26	19	30	1.98
32668979--32669074	25	3.7	25	77	9	86	31	22	26	19	1.98
32669034--32669146	24	4.8	24	74	9	72	34	18	27	19	1.95
32669191--32669272	26	3.3	26	78	11	75	34	20	25	19	1.96
32678063--32678106	16	2.5	17	82	14	54	29	0	11	59	1.32
32681138--32681186	25	1.9	26	91	4	82	65	0	2	32	1.04
32681284--32681341	25	2.3	26	82	11	75	63	1	5	29	1.25
32682016--32682067	15	3.6	14	74	20	54	9	7	1	80	0.97
32683150--32683198	25	1.9	26	91	4	82	32	0	0	67	0.91
32683173--32683234	19	3.4	18	76	14	56	33	4	0	61	1.17
32683150--32683205	26	2.2	26	87	6	78	33	0	0	66	0.92
32683321--32683392	25	2.7	26	81	12	85	33	1	1	63	1.11
32687044--32687076	17	1.9	17	93	0	57	15	12	15	57	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32692609--32692641	17	1.9	18	88	11	52	45	0	12	42	1.41
32695151--32695226	38	2.0	38	100	0	152	23	2	26	47	1.65
32698091--32698233	31	4.6	31	73	5	110	43	14	10	31	1.80
32698075--32698467	61	6.4	60	74	12	280	43	17	6	31	1.75
32698178--32698506	31	10.7	31	72	13	214	44	18	5	31	1.72
32698116--32698509	61	6.4	61	74	12	261	44	18	6	30	1.75
32698129--32698556	92	4.7	92	88	2	549	43	18	7	31	1.77
32698557--32698610	25	2.2	25	86	6	74	48	12	11	27	1.76
32703886--32703972	34	2.6	33	85	1	102	47	16	6	29	1.72
32703904--32703987	34	2.5	34	84	1	89	45	15	7	32	1.73
32706849--32706906	19	3.1	19	72	22	59	48	0	0	51	1.00
32711654--32711702	19	2.9	16	80	20	55	28	4	0	67	1.09
32718796--32718910	57	2.0	57	100	0	230	32	10	22	34	1.88
32720294--32720475	24	7.5	24	76	3	109	20	25	20	32	1.97
32720385--32720500	25	4.6	25	77	8	103	20	26	18	33	1.96
32722532--32722559	9	3.1	9	100	0	56	64	10	10	14	1.50
32723429--32723473	22	2.0	22	100	0	90	22	8	17	51	1.73
32727618--32727718	24	3.9	24	70	16	76	18	26	21	32	1.97
32727674--32727784	25	4.5	26	76	11	92	20	27	19	31	1.97
32730638--32730689	15	3.2	15	73	19	50	44	0	1	53	1.11
32730722--32730758	16	2.3	16	86	13	58	40	0	0	59	0.97
32730926--32730978	27	2.0	27	81	7	63	41	5	7	45	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32732482--32732675	98	2.0	98	95	0	352	37	25	10	26	1.89
32733464--32733595	19	6.8	19	91	3	219	36	15	10	37	1.82
32733457--32733594	59	2.4	59	91	4	221	36	14	10	38	1.80
32733910--32734316	173	2.4	173	92	0	654	28	23	20	27	1.99
32733902--32734316	89	4.8	85	75	12	346	28	24	20	27	1.99
32733779--32734316	44	12.5	42	72	12	299	28	23	19	28	1.98
32734400--32734886	44	11.1	44	66	13	205	24	26	20	29	1.99
32734308--32734960	132	4.9	132	94	1	1094	24	25	20	29	1.99
32736530--32736578	12	4.0	12	89	5	71	2	0	12	85	0.68
32736530--32736577	7	7.4	7	82	15	59	2	0	10	87	0.62
32736530--32736577	19	2.5	19	87	9	71	2	0	10	87	0.62
32736950--32737133	92	2.0	92	95	0	332	27	25	13	33	1.93
32739232--32739283	14	3.4	14	76	19	59	48	13	17	21	1.81
32739232--32739289	19	3.4	19	71	26	65	44	15	17	22	1.86
32739246--32739301	18	3.3	18	71	19	57	42	14	21	21	1.88
32739232--32739301	32	2.2	32	94	0	122	44	14	20	21	1.86
32742762--32742809	25	2.0	25	87	4	71	54	4	8	33	1.50
32743577--32743659	19	4.4	19	95	0	148	38	12	9	39	1.75
32745435--32745560	61	2.1	61	84	0	162	38	6	15	40	1.72
32752805--32753027	39	5.7	40	86	7	273	25	22	27	24	2.00
32752805--32753027	79	2.8	81	85	8	282	25	22	27	24	2.00
32752805--32753060	79	3.3	79	82	9	224	26	21	27	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32760793--32760977	79	2.3	81	84	7	236	24	22	27	25	2.00
32760794--32760977	40	4.6	40	83	9	216	24	22	27	25	2.00
32760846--32761010	79	2.1	79	84	6	210	26	21	27	25	1.99
32771166--32771256	36	2.5	36	82	5	112	36	35	14	14	1.86
32772628--32772658	15	2.1	15	93	0	53	67	16	0	16	1.23
32772778--32772813	18	1.9	20	88	11	58	75	2	8	13	1.15
32773167--32773236	23	3.1	22	76	15	63	75	1	1	21	0.96
32773167--32773235	7	9.4	7	73	6	57	75	1	1	21	0.96
32774664--32775272	267	2.3	267	89	0	923	25	25	20	28	1.99
32793886--32793982	30	3.3	30	85	1	124	37	14	17	30	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185