genome.fa.s5.2.7.7.80.10.50.1000.185.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  185  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56600097--56600174	38	2.0	39	95	2	140	51	28	2	17	1.59
56600307--56600369	17	3.5	17	69	12	54	34	3	12	49	1.57
56600304--56600378	37	2.0	37	94	0	114	36	4	14	45	1.64
56600377--56600407	9	3.4	9	95	0	53	25	9	22	41	1.84
56605118--56605175	7	8.3	7	92	0	71	32	39	8	18	1.82
56609594--56609711	59	2.0	58	91	1	191	46	9	0	42	1.42
56610610--56610686	29	2.6	29	79	4	82	49	15	12	22	1.78
56617147--56617184	18	2.1	18	90	9	60	31	18	15	34	1.92
56625228--56625265	20	1.9	20	94	0	67	52	7	5	34	1.53
56627043--56627127	30	2.9	29	75	5	100	48	10	9	31	1.70
56627043--56627170	59	2.2	59	84	4	161	48	10	10	29	1.73
56627978--56628029	22	2.4	21	79	17	54	55	5	0	38	1.24
56627905--56628196	122	2.4	121	94	1	496	52	4	0	42	1.25
56628139--56628192	26	2.0	28	89	7	85	61	0	0	38	0.96
56628320--56628378	29	2.1	28	87	6	84	49	5	10	35	1.59
56631853--56632047	89	2.2	90	83	4	234	32	17	21	28	1.96
56660475--56660504	14	2.1	15	93	6	53	40	0	0	60	0.97
56662537--56662577	21	2.0	21	85	9	57	46	12	7	34	1.69
56663161--56663214	27	2.0	27	92	0	90	33	24	24	18	1.97
56663667--56663825	27	5.9	27	74	12	121	30	11	18	38	1.87
56663667--56663819	54	2.8	54	81	7	177	29	11	19	39	1.87
56663831--56663957	63	2.0	63	92	0	209	32	29	20	18	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56666629--56666994	181	2.0	181	92	4	612	36	18	16	28	1.92
56668255--56668300	25	1.9	23	82	8	56	34	8	8	47	1.65
56668873--56668932	30	2.0	30	83	6	77	61	16	8	13	1.55
56679183--56679242	30	2.0	30	83	3	75	41	0	36	21	1.54
56695260--56695305	21	2.4	19	82	13	58	19	0	34	45	1.51
56695345--56696083	104	7.1	104	99	0	1460	24	5	29	40	1.78
56698899--56698943	16	3.0	16	75	15	51	46	0	6	46	1.29
56698923--56698985	33	1.9	33	83	0	81	53	3	3	39	1.33
56700601--56700640	21	1.9	21	100	0	80	27	25	7	40	1.82
56701608--56701652	15	2.8	16	86	10	56	55	6	0	37	1.26
56723972--56724089	33	3.7	33	69	17	95	19	13	16	50	1.78
56724765--56724816	27	1.9	27	88	0	77	17	15	25	42	1.88
56725853--56725905	26	2.0	28	82	14	67	1	22	1	73	1.03
56728209--56728268	30	2.0	31	83	3	77	41	0	38	20	1.52
56729041--56729075	17	1.9	19	88	11	56	31	17	0	51	1.45
56729361--56729393	17	1.9	17	93	0	57	27	12	0	60	1.32
56742132--56742186	15	3.5	15	71	9	56	49	1	0	49	1.11
56745413--56745581	83	2.0	83	97	0	320	40	7	7	45	1.59
56746070--56746198	45	2.8	45	92	2	204	35	1	23	39	1.64
56757336--56757371	18	2.0	18	88	0	54	19	0	11	69	1.18
56762484--56762563	27	3.0	27	75	3	72	25	31	22	21	1.98
56765651--56765697	24	2.0	24	84	16	62	31	0	17	51	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56765860--56765965	37	2.7	39	78	10	126	23	16	25	33	1.96
56782698--56782732	17	2.0	18	88	5	54	31	2	0	65	1.07
56785675--56785744	17	4.0	17	73	12	61	38	0	2	58	1.13
56791564--56791693	64	2.0	64	98	0	251	20	21	16	42	1.89
56795614--56796083	103	4.6	102	91	2	692	18	20	29	31	1.96
56795718--56795875	33	4.7	33	71	22	148	17	20	27	34	1.95
56795897--56795949	27	2.0	26	92	3	88	15	20	33	30	1.93
56800667--56800724	30	1.9	30	89	0	89	41	3	24	31	1.71
56800936--56800967	13	2.5	13	94	0	55	31	0	12	56	1.37
56801062--56801303	50	4.7	50	85	4	288	26	23	29	19	1.99
56801062--56801311	100	2.4	103	87	6	355	26	23	29	20	1.99
56805866--56806081	47	4.5	47	78	8	193	30	28	15	25	1.96
56811403--56811460	30	1.9	30	89	0	89	41	3	24	31	1.71
56811672--56811703	13	2.5	13	94	0	55	31	0	12	56	1.37
56811798--56812040	51	4.7	50	89	4	317	27	25	27	19	1.99
56811912--56812040	26	5.0	26	61	17	72	28	26	26	18	1.98
56811920--56812000	25	3.2	25	63	16	67	27	27	27	18	1.98
56811938--56812017	25	3.2	25	63	16	65	30	30	23	16	1.96
56828824--56828893	36	2.0	35	91	2	113	31	10	10	48	1.70
56853934--56853964	16	1.9	16	93	0	53	41	6	6	45	1.55
56863447--56863473	7	3.9	7	100	0	54	29	0	25	44	1.54
56869707--56869740	18	1.9	17	88	5	50	73	0	26	0	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56869705--56869754	25	2.0	26	88	4	75	70	0	28	2	0.99
56884355--56884432	41	1.9	41	81	0	93	23	21	25	29	1.99
56892761--56892919	78	2.0	78	93	0	273	18	13	21	45	1.84
56894211--56894236	2	13.0	2	100	0	52	50	50	0	0	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185

The End!