genome.fa.s5.2.7.7.80.10.50.1000.122.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  122  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37642655--37642752	23	4.3	23	90	2	162	31	26	21	20	1.98
37642662--37642750	45	2.0	45	95	0	160	31	26	22	19	1.97
37651296--37651324	14	2.0	15	93	6	51	27	0	20	51	1.47
37652477--37652632	43	3.7	41	76	13	156	24	19	28	28	1.98
37652477--37652637	84	1.9	84	82	9	204	24	18	27	29	1.98
37654496--37654552	25	2.2	26	81	6	71	40	10	5	43	1.62
37656697--37656748	24	2.2	24	86	6	70	40	3	5	50	1.45
37661042--37661093	24	2.2	24	89	6	79	40	1	5	51	1.37
37662543--37662576	18	1.9	17	88	5	50	32	0	2	64	1.08
37662547--37662633	44	2.0	44	90	0	138	34	8	3	54	1.47
37663181--37663205	2	12.5	2	100	0	50	48	0	0	52	1.00
37671202--37671251	24	2.1	24	92	0	82	16	30	8	46	1.75
37671382--37671597	85	2.5	88	88	6	323	41	22	7	28	1.81
37671642--37671696	9	6.0	10	77	16	57	60	0	0	40	0.97
37671644--37671696	26	2.0	27	88	3	81	60	0	0	39	0.97
37671687--37671730	18	2.4	18	88	3	61	72	2	4	20	1.13
37671663--37671760	39	2.5	38	79	8	90	66	2	4	27	1.21
37671678--37671740	20	3.2	20	77	11	67	69	1	4	23	1.16
37671705--37671770	20	3.3	20	73	12	64	65	3	4	27	1.27
37671689--37671770	10	8.3	10	67	12	53	68	2	4	24	1.22
37672012--37672066	20	2.7	20	78	10	58	27	1	0	70	0.97
37672079--37672280	89	2.3	87	82	9	225	30	8	24	37	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37675106--37675149	19	2.3	19	88	11	63	25	4	0	70	1.06
37677619--37677679	30	2.1	29	84	3	77	55	3	3	37	1.32
37679779--37679854	29	2.6	29	72	17	66	38	15	10	35	1.82
37681390--37681441	24	2.2	24	89	0	77	55	9	1	32	1.43
37684535--37684575	3	13.7	3	100	0	82	68	0	0	31	0.90
37690913--37690957	22	2.0	23	86	4	65	33	2	6	57	1.37
37691498--37691537	3	13.3	3	100	0	80	32	32	0	35	1.58
37698004--37698041	14	2.8	14	88	4	51	26	7	23	42	1.81
37701251--37701284	14	2.5	14	95	4	61	50	35	0	14	1.44
37704161--37704245	27	3.1	27	81	3	100	20	22	36	21	1.95
37705585--37705612	14	2.0	14	100	0	56	14	21	21	42	1.88
37707422--37707460	16	2.4	16	100	0	78	58	5	0	35	1.20
37708209--37708257	25	1.9	26	91	4	82	51	18	0	30	1.47
37708206--37708264	26	2.3	26	85	5	84	50	20	0	28	1.48
37708312--37708895	44	13.3	44	62	7	153	27	19	24	28	1.99
37708263--37708958	88	7.9	87	88	1	955	27	19	24	28	1.99
37708923--37709347	132	3.2	131	86	2	575	32	20	21	25	1.98
37709326--37709640	131	2.4	129	80	11	308	31	22	23	23	1.98
37709941--37709975	15	2.3	15	95	0	61	34	42	8	14	1.76
37711028--37711086	22	2.6	22	86	7	75	35	6	1	55	1.36
37716247--37716294	8	6.5	8	79	13	50	64	6	2	27	1.28
37716243--37716300	21	2.7	21	84	12	66	63	5	1	29	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37716242--37716309	28	2.4	29	85	4	86	64	4	1	29	1.21
37726654--37726693	14	2.8	13	88	11	53	70	7	0	22	1.12
37726969--37728835	933	2.0	933	99	0	3725	33	15	13	37	1.87
37742407--37742446	9	4.3	9	83	3	53	40	2	2	55	1.27
37744269--37744309	21	2.0	21	90	0	64	21	12	14	51	1.75
37744305--37744414	42	2.6	42	81	5	107	16	23	16	43	1.87
37744349--37744414	21	3.1	21	72	8	53	18	24	15	42	1.88
37745184--37745679	254	1.9	255	89	1	771	22	24	28	24	2.00
37745964--37745995	16	2.0	16	93	0	55	40	12	40	6	1.68
37753403--37753520	41	2.9	41	80	0	137	32	23	22	22	1.98
37756171--37756211	13	3.2	13	77	19	50	29	0	0	70	0.87
37776147--37776462	50	6.4	50	74	5	239	29	20	26	22	1.99
37776143--37776462	149	2.1	149	90	1	498	29	20	26	23	1.99
37790012--37790040	12	2.5	12	94	5	51	27	17	10	44	1.81
37801299--37801507	105	2.0	105	91	0	337	29	26	22	22	1.99
37805950--37806029	4	19.5	4	74	23	62	23	2	0	73	0.95
37805973--37806022	5	10.0	5	75	16	50	22	4	0	74	0.99
37805949--37806026	35	2.3	33	87	10	106	23	2	0	74	0.94
37807353--37807402	24	2.1	23	81	3	55	74	4	6	16	1.17
37807545--37807759	108	2.0	107	98	0	403	27	11	15	44	1.81
37808096--37808137	18	2.3	18	84	8	50	30	0	4	64	1.14
37809771--37809893	46	2.7	46	98	1	239	29	23	14	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37819796--37819860	32	2.0	32	100	0	130	44	12	12	30	1.79
37820791--37820864	27	2.8	27	79	2	87	35	25	17	21	1.95
37824291--37824326	16	2.2	16	100	0	72	47	11	5	36	1.63
37841252--37841317	31	2.2	30	84	13	82	43	0	0	56	0.99
37842538--37842593	23	2.3	23	84	12	67	67	0	1	30	1.01
37849228--37849257	14	2.1	14	93	6	51	43	0	10	46	1.37
37849231--37849272	14	3.1	13	86	13	50	45	0	7	47	1.30
37849231--37849272	19	2.3	18	84	8	57	45	0	7	47	1.30
37871158--37871430	47	5.6	47	82	10	312	32	8	30	28	1.87
37871158--37871430	49	5.6	49	82	11	337	32	8	30	28	1.87
37871240--37871430	96	2.0	96	88	2	287	31	8	31	27	1.87
37882646--37882686	21	2.0	21	90	0	64	19	29	21	29	1.98
37890630--37890688	26	2.2	26	82	8	66	32	3	3	61	1.29
37890815--37890874	7	7.7	7	76	20	57	33	5	0	61	1.17
37890778--37890883	8	12.4	9	70	24	63	31	3	1	63	1.23
37890769--37890860	35	2.6	36	80	8	93	30	5	2	61	1.30
37890780--37890876	52	1.9	50	85	12	135	30	4	1	63	1.19
37890781--37890874	26	3.8	23	75	24	86	30	4	1	63	1.20
37895662--37895707	23	2.0	23	82	0	56	71	2	21	4	1.14
37895775--37895855	42	1.9	42	85	5	110	32	12	27	28	1.93
37897431--37897490	7	8.3	7	81	7	66	23	3	25	48	1.66
37897428--37897490	15	4.3	15	80	8	67	22	3	26	47	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37897431--37897490	22	2.7	22	89	0	84	23	3	25	48	1.66
37898297--37898346	6	8.2	6	86	4	64	22	0	42	36	1.54
37898301--37898340	18	2.2	18	95	0	71	22	0	42	35	1.54
37898085--37898561	246	2.0	243	91	3	780	35	2	20	41	1.67
37902680--37902777	49	2.0	51	86	8	139	45	3	25	25	1.68
37902737--37902784	11	4.2	12	80	17	50	43	4	27	25	1.72
37903403--37903453	21	2.3	22	83	10	59	64	0	3	31	1.11
37903628--37903766	19	7.2	19	71	17	60	28	7	2	61	1.37
37903669--37903788	10	12.6	9	69	18	66	28	5	2	63	1.31
37903623--37903767	56	2.5	57	82	9	170	28	6	2	61	1.36
37903695--37903788	19	4.8	19	77	13	86	28	5	3	62	1.32
37903678--37903788	39	2.9	38	76	10	118	27	5	2	63	1.29
37903885--37904059	90	1.9	90	84	2	235	34	9	20	35	1.85
37904160--37904211	23	2.3	23	87	6	72	42	0	0	57	0.98
37905835--37905908	37	2.0	36	87	7	105	33	1	0	64	1.02
37906673--37906715	17	2.4	18	88	7	61	74	0	0	25	0.82
37906675--37906714	8	4.6	9	85	14	57	75	0	0	25	0.81
37906674--37906738	19	3.4	18	85	8	76	70	0	1	27	0.96
37906674--37906735	9	6.7	9	74	7	61	72	0	1	25	0.94
37906912--37907003	19	4.8	19	91	0	157	38	10	15	35	1.82
37907196--37907234	19	2.1	19	85	9	53	15	10	5	69	1.34
37907698--37907892	98	2.0	98	95	0	354	27	10	25	36	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37910599--37910650	27	1.9	27	96	0	95	36	9	19	34	1.84
37911444--37911473	6	4.8	6	95	4	51	86	13	0	0	0.57
37912724--37913247	132	4.0	133	84	4	641	28	18	24	29	1.98
37913078--37913272	44	4.4	44	70	13	114	27	16	26	30	1.97
37913475--37913547	19	3.8	19	92	0	128	38	9	15	36	1.80
37914603--37914797	98	2.0	98	91	2	320	29	10	23	36	1.89
37925997--37926042	24	2.0	24	83	8	60	10	10	4	73	1.22
37937108--37937659	276	2.0	276	98	0	1068	33	16	17	32	1.92
37950389--37950461	35	2.1	35	100	0	146	36	10	8	43	1.70
37954746--37954820	20	3.7	22	91	7	90	44	0	0	56	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185