genome.fa.s5.2.7.7.80.10.50.1000.56.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  56  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17523818--17524357	27	20.1	27	72	12	229	36	18	20	24	1.95
17523818--17524141	81	4.0	80	78	7	282	38	19	19	22	1.93
17523819--17524125	160	1.9	160	81	8	365	38	19	18	22	1.93
17523890--17524343	54	8.4	52	79	6	365	36	18	20	25	1.94
17524586--17524641	26	2.2	26	83	0	67	16	19	28	35	1.93
17524629--17524865	32	7.4	32	75	1	136	21	20	20	36	1.95
17524629--17524853	64	3.5	64	77	3	229	22	20	20	36	1.95
17524664--17524846	96	1.9	96	83	0	240	21	21	20	35	1.96
17526825--17527010	43	4.3	43	81	2	221	21	29	19	29	1.98
17526805--17527012	43	4.8	43	77	8	208	22	28	20	28	1.98
17530642--17530986	16	21.1	16	68	17	128	31	3	18	46	1.65
17530630--17530721	25	3.7	25	81	5	105	34	2	17	45	1.61
17530703--17530756	25	2.2	25	86	0	72	29	1	16	51	1.55
17530710--17530764	25	2.2	25	96	0	101	30	3	18	47	1.66
17530694--17530931	83	2.9	82	86	5	313	29	3	17	48	1.65
17530786--17530852	25	2.7	25	83	0	62	29	5	17	46	1.72
17530642--17530985	41	8.4	41	71	10	188	31	3	18	46	1.65
17530873--17530987	25	4.8	24	80	10	112	31	1	20	46	1.61
17530958--17530982	13	1.9	13	100	0	50	36	0	16	48	1.46
17530638--17530969	9	40.0	9	66	20	161	31	3	18	46	1.66
17531088--17531135	12	4.0	12	91	0	78	72	6	2	18	1.15
17531172--17531211	15	2.7	15	100	0	80	65	5	12	17	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17539916--17539980	10	6.5	10	71	13	53	24	21	15	38	1.92
17539916--17539969	20	2.7	20	85	0	72	25	20	16	37	1.93
17539916--17539989	30	2.5	30	84	8	80	22	20	17	39	1.92
17539916--17539980	20	3.2	20	73	16	62	24	21	15	38	1.92
17541595--17541657	21	3.0	21	88	2	81	34	31	4	28	1.78
17546797--17546889	46	2.0	46	93	4	161	35	22	18	23	1.96
17547215--17547252	19	2.0	19	100	0	76	21	21	21	36	1.95
17549597--17549636	18	2.2	18	86	4	53	12	27	0	60	1.33
17550693--17550744	14	4.0	13	92	7	88	23	13	0	63	1.29
17550693--17550744	25	2.0	27	92	7	90	23	13	0	63	1.29
17550782--17550828	12	3.9	12	91	0	76	12	6	10	70	1.33
17551143--17551236	46	2.0	46	93	4	163	35	22	18	24	1.96
17558950--17559011	23	2.7	23	84	0	79	30	6	25	37	1.81
17559414--17560039	50	12.5	49	68	5	338	19	25	24	30	1.98
17559350--17560039	100	6.9	100	91	0	1013	20	25	24	30	1.99
17561338--17561441	42	2.5	42	91	0	163	25	31	13	28	1.94
17562027--17562072	16	3.1	15	84	12	51	4	8	2	84	0.83
17568123--17568391	50	5.4	50	70	6	211	19	24	23	31	1.98
17568053--17568495	100	4.4	100	86	1	521	22	24	23	29	1.99
17568045--17568495	201	2.2	200	83	1	573	23	24	22	29	1.99
17577900--17579015	376	3.0	376	99	0	2196	33	14	13	38	1.85
17581755--17581788	5	6.8	5	89	0	50	2	11	0	85	0.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17581753--17581789	10	3.6	10	88	3	56	2	10	0	86	0.67
17588368--17588828	23	20.3	23	72	13	305	40	24	6	29	1.79
17588376--17588826	46	9.9	46	75	8	377	40	24	5	29	1.78
17588376--17588694	113	2.8	113	79	9	355	41	23	5	29	1.77
17588420--17588826	136	3.0	137	95	1	746	40	24	5	29	1.78
17589164--17589247	39	2.1	39	86	4	114	51	7	11	29	1.65
17591724--17591778	27	2.0	27	96	0	101	50	3	34	10	1.55
17592409--17592460	15	3.7	15	69	27	51	25	0	5	69	1.10
17592415--17592472	26	2.3	26	84	3	73	22	3	6	67	1.30
17592485--17592827	104	3.2	105	82	10	407	29	13	11	45	1.79
17592533--17592831	105	2.8	105	82	8	397	28	12	10	48	1.74
17592932--17592961	15	2.0	15	100	0	60	40	0	0	60	0.97
17593513--17593566	14	3.8	14	79	18	58	37	37	1	24	1.66
17593583--17593617	15	2.4	14	86	9	52	37	37	2	22	1.69
17593761--17593835	33	2.3	33	83	2	98	40	40	4	16	1.67
17593905--17593943	7	5.6	7	90	0	51	28	48	2	20	1.62
17594685--17594925	41	5.9	41	84	4	301	29	26	24	19	1.98
17594960--17595041	39	2.1	38	84	4	101	28	20	14	36	1.92
17599874--17599902	2	14.5	2	100	0	58	0	51	0	48	1.00
17600597--17600621	5	5.0	5	100	0	50	40	0	40	20	1.52
17607571--17607636	26	2.6	27	80	9	75	30	7	15	46	1.73
17615122--17615165	22	2.0	22	95	0	79	25	36	4	34	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17617056--17617116	27	2.3	26	80	5	70	26	3	8	62	1.39
17618729--17618757	11	2.6	11	100	0	58	79	6	0	13	0.93
17618814--17618864	15	3.5	15	73	10	52	74	3	9	11	1.19
17618802--17618869	29	2.3	29	90	5	111	76	2	11	8	1.12
17620024--17620070	23	2.1	23	84	7	62	51	12	4	31	1.59
17623266--17623465	100	2.0	100	100	0	400	52	24	7	17	1.69
17628461--17628513	15	3.7	15	82	7	65	1	20	1	75	0.99
17630481--17630545	20	3.3	19	73	16	51	38	16	21	23	1.93
17640141--17640215	23	3.3	23	96	0	132	33	25	21	20	1.97
17641848--17641911	25	2.5	25	78	12	69	20	15	3	60	1.48
17646710--17647293	50	11.7	50	70	1	389	28	22	26	23	1.99
17646731--17647420	100	6.9	99	90	2	934	27	21	25	24	1.99
17646782--17647355	50	11.5	49	68	3	293	28	22	25	23	1.99
17649943--17650021	13	6.1	13	82	5	88	40	24	3	31	1.73
17651363--17651411	24	2.0	24	96	0	89	40	10	12	36	1.77
17665044--17665088	19	2.4	19	88	7	65	26	22	6	44	1.77
17669176--17669363	51	3.7	50	85	3	243	30	27	16	25	1.97
17676944--17676983	12	3.4	12	89	3	64	25	37	0	37	1.56
17679118--17679245	64	2.0	64	89	0	193	28	17	12	40	1.87
17686431--17686761	32	10.4	32	86	6	440	40	21	20	18	1.92
17686902--17686948	24	2.0	24	86	0	67	48	23	12	14	1.78
17686907--17686956	24	2.1	24	84	0	64	50	24	8	18	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17691964--17692027	26	2.5	26	86	0	92	25	25	20	29	1.99
17694312--17694545	50	4.6	50	79	4	211	27	21	27	23	1.99
17694755--17694803	20	2.5	20	81	15	66	57	6	24	12	1.58
17714175--17714205	13	2.4	13	100	0	62	25	16	38	19	1.92
17718966--17719015	26	1.9	26	87	0	73	20	16	22	42	1.89
17722761--17722799	14	2.7	15	88	7	55	17	12	10	58	1.61
17728967--17729012	24	1.9	24	86	0	65	17	32	10	39	1.84
17734383--17734420	9	4.2	9	100	0	76	34	21	13	31	1.91
17749043--17749074	12	2.6	13	85	14	50	56	6	0	37	1.25
17750023--17750054	12	2.6	13	85	14	50	37	0	6	56	1.25
17754970--17755015	22	2.0	22	84	12	58	56	4	10	28	1.53
17756943--17757011	19	3.5	20	80	5	79	73	1	1	23	0.99
17757875--17757951	30	2.6	30	82	0	100	18	24	27	29	1.98
17759891--17760085	27	7.1	27	90	2	273	19	16	21	42	1.90
17759891--17760085	55	3.6	54	87	5	284	19	16	21	42	1.90
17759891--17760085	82	2.4	82	92	3	313	19	16	21	42	1.90
17767757--17767797	20	2.1	19	86	4	55	48	4	4	41	1.46
17778832--17778865	15	2.4	15	90	9	54	73	0	0	26	0.83
17778834--17778870	19	1.9	19	89	10	58	70	0	0	29	0.88
17778816--17778869	26	2.0	27	86	10	76	70	0	3	25	1.04
17781259--17781523	134	2.0	128	91	4	431	36	6	26	30	1.82
17781499--17781676	89	2.0	89	97	0	338	26	18	28	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17781662--17781813	27	5.6	27	88	2	214	26	15	28	29	1.96
17781662--17781813	55	2.8	55	87	2	225	26	15	28	29	1.96
17781661--17781813	82	1.9	82	91	0	252	26	15	28	29	1.96
17784439--17784510	35	2.1	35	94	0	126	44	13	20	20	1.86
17810760--17810942	40	4.6	39	81	6	179	25	21	27	25	1.99
17810796--17810977	79	2.3	80	80	3	190	26	20	27	24	1.99
17818682--17818891	40	5.3	39	89	4	242	25	21	27	25	1.99
17818629--17818891	120	2.2	120	82	4	309	25	21	27	25	1.99
17818630--17818926	80	3.7	80	81	6	230	26	21	27	24	1.99
17820704--17820740	18	2.1	18	94	0	65	37	5	2	54	1.38

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185