genome.fa.s5.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  112  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35056547--35056700	81	1.9	81	90	4	247	22	22	24	30	1.99
35060320--35060419	48	2.1	48	98	0	191	27	17	14	42	1.87
35061478--35061718	42	5.7	42	87	3	315	20	17	30	32	1.95
35064039--35064087	23	2.1	23	88	7	73	24	14	32	28	1.94
35064371--35064634	5	52.8	5	100	0	528	40	0	0	59	0.97
35064650--35064693	20	2.2	20	88	8	63	72	4	11	11	1.25
35064707--35064746	13	2.9	15	79	20	52	72	0	27	0	0.85
35066710--35066813	43	2.4	44	80	1	102	28	15	29	25	1.96
35073186--35073239	18	2.9	18	86	2	72	11	1	46	40	1.50
35077520--35077611	25	3.7	25	77	11	98	18	26	19	35	1.95
35077499--35077617	50	2.4	50	80	8	134	21	23	18	36	1.95
35077653--35077708	25	2.2	25	81	6	69	23	17	23	35	1.95
35084227--35084291	24	2.7	24	90	4	96	20	29	16	33	1.95
35087471--35087613	71	2.0	71	95	0	259	16	51	7	24	1.70
35088945--35088986	14	3.0	14	89	0	66	38	14	0	47	1.44
35099536--35099762	121	1.9	118	85	2	310	37	15	20	26	1.92
35102932--35102958	5	5.4	5	100	0	54	22	0	18	59	1.38
35113330--35113397	26	2.5	26	80	4	64	66	10	10	13	1.46
35114752--35114787	16	2.2	16	100	0	72	50	5	5	38	1.49
35115490--35115515	13	2.0	13	100	0	52	84	0	15	0	0.62
35117685--35117737	26	2.0	26	96	0	97	45	15	32	7	1.74
35121813--35121866	26	2.1	26	89	6	83	46	0	5	48	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35124390--35124529	46	3.0	46	89	2	201	30	25	7	37	1.84
35125755--35125802	17	2.9	17	87	3	71	50	20	2	27	1.60
35125958--35126074	44	2.7	43	79	11	139	23	19	28	29	1.98
35125948--35126074	43	2.9	43	75	13	143	22	18	27	31	1.97
35132523--35132793	43	6.3	43	84	1	276	31	26	16	25	1.97
35133784--35133852	34	2.0	34	100	0	138	50	20	11	17	1.76
35133999--35134083	40	2.1	40	84	4	109	49	14	5	30	1.66
35134149--35134428	86	3.2	86	87	3	384	42	17	8	31	1.79
35138053--35138179	14	8.9	14	69	17	57	43	30	0	25	1.60
35138126--35138184	21	2.8	21	78	0	64	47	28	0	23	1.52
35138230--35138278	7	6.9	7	82	13	55	51	30	0	18	1.47
35138316--35138362	7	6.6	7	80	4	58	53	27	0	19	1.45
35138380--35138413	14	2.4	14	90	0	50	44	29	0	26	1.55
35138575--35138701	14	8.9	14	69	17	57	43	30	0	25	1.60
35138648--35138706	21	2.8	21	78	0	64	47	28	0	23	1.52
35138752--35138800	7	6.9	7	82	13	55	51	30	0	18	1.47
35138838--35138884	7	6.6	7	80	4	58	53	27	0	19	1.45
35138902--35138935	14	2.4	14	90	0	50	44	29	0	26	1.55
35137952--35139100	522	2.2	522	99	0	2280	45	22	2	28	1.66
35139296--35139526	41	5.8	41	80	4	222	31	24	18	25	1.98
35144981--35145037	6	9.5	6	76	0	51	24	22	24	28	2.00
35144993--35145027	18	1.9	18	94	0	61	20	25	31	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35144978--35145043	30	2.2	30	86	0	87	24	24	25	25	2.00
35145029--35145063	6	5.8	6	96	0	61	34	28	17	20	1.95
35151357--35151397	21	2.0	21	81	18	50	31	19	26	21	1.97
35157566--35157601	18	2.0	18	88	0	54	25	8	19	47	1.77
35159591--35159653	21	3.0	21	97	2	117	34	28	26	9	1.88
35159870--35159903	16	2.1	16	94	0	59	38	11	11	38	1.79
35161512--35161545	4	8.0	4	90	9	50	23	0	2	73	0.97
35161495--35161554	22	2.7	22	73	19	61	26	0	6	66	1.16
35172776--35172802	4	6.8	4	100	0	54	25	0	0	74	0.83
35191507--35191589	42	2.0	42	97	0	157	28	15	25	30	1.96
35193464--35193502	16	2.4	16	91	0	60	35	2	25	35	1.70
35193774--35193822	24	2.2	23	79	20	59	57	6	0	36	1.24
35200878--35202070	49	24.6	49	97	1	2203	32	8	29	30	1.86
35212404--35212438	15	2.4	15	90	4	54	48	0	8	42	1.33
35217937--35218030	46	2.0	46	100	0	188	29	10	11	47	1.74
35219302--35219328	14	1.9	14	100	0	54	22	0	14	62	1.31
35225162--35225682	260	2.0	259	91	1	848	40	19	11	28	1.86
35228004--35228050	17	2.8	17	83	9	60	34	4	2	59	1.29
35228798--35228863	31	2.1	31	85	0	87	27	22	13	36	1.92
35235909--35235943	18	1.9	18	88	0	52	40	0	42	17	1.49
35239490--35239667	28	6.5	27	78	9	139	32	27	10	30	1.89
35239490--35239667	55	3.3	54	73	10	148	32	27	10	30	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35239492--35239667	83	2.1	82	81	7	212	31	27	9	30	1.89
35244696--35244724	5	5.8	5	100	0	58	58	0	0	41	0.98
35246030--35246064	18	2.0	17	88	5	52	54	0	0	45	0.99
35245944--35246238	162	1.8	163	96	0	547	44	3	4	48	1.38
35246172--35246213	15	2.7	16	82	14	52	52	2	0	45	1.13
35246181--35246222	15	2.9	15	82	10	52	52	0	0	47	1.00
35246207--35246394	61	3.1	61	69	17	201	48	6	1	43	1.38
35246291--35246342	15	3.6	15	80	12	56	53	1	0	44	1.11
35246170--35246467	120	2.5	121	94	3	521	50	4	2	42	1.36
35250550--35250595	23	2.0	23	95	0	83	50	13	2	34	1.53
35251221--35251247	13	2.1	13	100	0	54	37	0	7	55	1.28
35256996--35257042	23	2.1	22	84	11	60	25	2	2	70	1.10
35259007--35259154	28	5.2	28	72	16	92	30	25	17	26	1.97
35259057--35259234	29	6.3	29	83	7	215	35	23	17	23	1.95
35259057--35259234	86	2.1	83	86	6	241	35	23	17	23	1.95
35261218--35261322	54	1.9	54	84	0	138	20	26	26	25	1.99
35268542--35268592	19	2.8	17	81	18	59	43	1	11	43	1.52
35269713--35269801	38	2.3	38	75	7	99	20	19	25	34	1.96
35269716--35269799	19	4.4	19	77	5	80	20	20	25	34	1.96
35272934--35273146	89	2.4	90	82	7	254	32	25	15	25	1.96
35272928--35273146	45	4.9	45	84	5	259	32	25	16	25	1.96
35278317--35278468	29	5.3	29	80	8	150	26	15	21	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35285676--35285703	12	2.3	12	100	0	56	42	7	7	42	1.59
35288332--35288594	40	6.6	40	88	3	325	24	20	27	26	1.99
35288371--35288629	80	3.3	80	85	3	256	25	20	27	25	1.99
35296285--35296547	40	6.6	40	88	3	325	24	20	27	26	1.99
35296324--35296582	80	3.3	80	85	3	256	25	20	27	25	1.99
35300158--35300196	19	2.0	19	85	5	51	48	5	2	43	1.38
35300904--35300947	3	14.7	3	100	0	88	0	31	0	68	0.90
35305365--35305410	16	2.8	17	78	15	51	71	8	0	19	1.11
35306683--35306725	22	1.9	23	90	4	70	65	4	11	18	1.42
35309939--35310022	3	28.0	3	95	0	150	33	2	0	64	1.07
35310795--35310928	70	1.9	70	90	0	214	27	17	21	33	1.96
35311632--35311665	17	2.0	17	100	0	68	11	17	23	47	1.81
35316591--35316643	24	2.2	24	93	0	88	35	11	24	28	1.90
35316778--35316955	62	2.9	62	93	1	304	30	22	12	34	1.91
35317082--35318353	44	28.8	44	72	10	599	31	19	21	27	1.97
35317083--35317412	177	1.9	176	79	8	375	31	19	21	27	1.97
35317130--35318360	222	5.6	222	74	6	652	31	19	21	27	1.97
35317654--35318356	178	4.0	177	87	2	910	32	19	21	26	1.97
35318338--35318610	89	3.1	89	88	1	386	27	21	24	26	1.99
35318602--35319008	132	3.1	131	83	4	515	28	19	26	26	1.99
35318626--35319007	124	3.0	126	81	6	446	28	20	25	25	1.99
35319809--35319839	8	3.9	8	100	0	62	25	0	9	64	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35325871--35325967	22	4.4	22	81	0	86	41	15	28	14	1.86
35325883--35325979	22	4.4	22	80	0	86	44	14	25	15	1.84
35345628--35345719	39	2.3	39	88	5	132	25	28	22	23	2.00
35345609--35345772	40	4.1	40	80	10	176	24	27	23	25	2.00
35367741--35367893	41	3.7	41	86	1	200	28	23	24	23	1.99
35371750--35371782	15	2.1	16	88	5	50	60	3	0	36	1.12
35372568--35372599	14	2.3	14	100	0	64	31	46	15	6	1.71
35377695--35377724	14	2.1	14	100	0	60	33	46	13	6	1.69
35398285--35398321	18	2.2	18	85	9	51	43	5	0	51	1.24
35399434--35399511	6	12.7	6	82	15	88	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185