genome.fa.s5.2.7.7.80.10.50.1000.120.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  120  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37159607--37159672	20	3.2	20	76	17	71	22	3	4	69	1.20
37162746--37162793	22	2.2	21	78	10	51	37	16	6	39	1.74
37163510--37163618	19	5.7	19	86	0	164	39	10	12	37	1.77
37163517--37163618	38	2.7	38	95	0	186	40	9	11	38	1.75
37163510--37163646	19	6.9	20	82	5	122	39	8	13	37	1.76
37168973--37169021	12	3.8	12	82	12	53	79	0	20	0	0.73
37168978--37169028	7	7.6	7	80	14	54	76	0	21	1	0.88
37168973--37169028	20	2.8	20	84	7	71	78	0	19	1	0.84
37168985--37169028	6	7.0	6	82	10	52	77	0	20	2	0.88
37170263--37170492	44	5.2	44	82	4	268	27	13	26	32	1.94
37170261--37170525	132	2.0	132	84	4	347	29	14	25	30	1.95
37170477--37171232	132	5.8	132	90	3	1199	29	18	22	29	1.98
37171819--37171847	12	2.5	12	94	5	51	44	10	17	27	1.81
37189111--37189172	26	2.4	26	94	0	106	24	4	6	64	1.37
37190221--37190253	2	16.5	2	100	0	66	0	48	0	51	1.00
37192843--37192894	20	2.5	19	79	14	59	42	15	13	28	1.85
37195693--37196778	250	4.3	250	74	10	888	34	17	10	37	1.84
37197548--37197588	19	2.3	18	87	8	57	53	0	7	39	1.29
37211315--37211346	12	2.7	12	95	0	55	62	0	3	34	1.11
37213325--37213383	3	19.7	3	78	0	64	32	3	5	59	1.36
37213754--37213816	4	15.8	4	100	0	126	50	23	0	25	1.49
37214679--37214723	22	2.0	22	83	8	56	46	11	6	35	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37215642--37215696	21	2.6	21	85	0	74	29	36	10	23	1.89
37223744--37224060	135	2.3	138	88	6	461	31	7	15	45	1.74
37240943--37240998	21	2.7	20	72	25	53	62	5	21	10	1.47
37241533--37241622	39	2.2	40	90	3	137	40	2	4	53	1.33
37241974--37242018	23	2.0	23	95	0	81	42	2	8	46	1.47
37242203--37242257	27	1.9	29	89	10	87	10	0	38	50	1.37
37242298--37242591	96	3.1	93	83	3	345	41	3	15	39	1.64
37242629--37242924	125	2.4	126	87	3	411	35	19	18	26	1.95
37245345--37246458	372	3.0	373	91	1	1829	27	20	24	27	1.99
37246895--37246951	21	2.7	21	75	8	53	12	15	40	31	1.85
37247326--37247383	30	1.9	30	85	0	80	13	12	41	32	1.82
37247876--37247907	7	4.6	7	96	0	55	46	15	9	28	1.77
37249081--37249145	22	3.0	21	82	10	69	47	0	29	23	1.52
37249092--37249145	11	5.0	10	76	14	54	48	0	29	22	1.51
37252931--37253000	29	2.4	29	85	0	104	27	21	20	31	1.98
37253911--37253939	3	9.7	3	100	0	58	65	0	0	34	0.93
37254546--37254617	27	2.7	26	87	8	110	43	8	0	48	1.33
37254672--37254756	27	3.1	27	89	0	134	25	29	29	15	1.96
37254672--37254772	27	3.7	25	77	15	94	24	26	29	18	1.98
37254911--37254949	19	2.0	21	85	10	55	23	0	10	66	1.22
37255791--37255835	18	2.5	18	81	0	63	28	8	48	13	1.72
37257089--37257372	106	2.7	104	83	6	345	31	22	18	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37262911--37263822	159	5.7	159	77	11	866	29	12	7	50	1.67
37263061--37263822	319	2.4	318	92	2	1260	29	11	7	50	1.67
37263220--37263743	161	3.3	160	72	15	540	28	12	7	52	1.65
37264612--37264685	25	2.9	26	74	21	77	0	31	0	68	0.89
37264636--37264773	18	7.1	18	70	19	75	0	28	0	71	0.87
37264647--37264763	21	5.7	21	74	17	111	0	29	0	70	0.87
37264646--37264763	22	5.7	22	71	26	105	0	28	0	71	0.87
37264673--37264806	4	33.0	4	73	20	93	0	29	0	70	0.93
37264642--37264775	44	3.1	44	76	14	163	0	27	0	72	0.85
37264655--37264806	28	5.6	28	72	19	92	0	29	0	69	0.93
37264608--37264806	40	5.0	40	76	14	155	0	29	0	70	0.91
37264662--37264801	18	7.7	18	69	20	85	0	28	0	70	0.92
37264685--37264817	48	2.8	47	76	13	128	0	30	0	68	0.95
37264849--37264916	27	2.5	27	90	0	109	16	26	29	27	1.97
37264989--37265060	28	2.6	29	89	6	114	47	0	9	43	1.36
37266024--37266097	18	4.1	17	74	20	69	67	5	2	24	1.25
37269403--37269429	13	2.1	13	100	0	54	59	0	0	40	0.98
37269427--37269742	137	2.3	137	93	1	524	52	9	10	28	1.65
37270062--37270114	26	2.0	26	85	7	72	37	5	16	39	1.73
37270313--37270375	32	1.9	34	83	6	85	39	3	4	52	1.38
37271461--37271510	23	2.2	23	85	7	66	50	6	0	44	1.26
37273325--37273382	25	2.5	25	89	10	88	31	5	1	62	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37273593--37273777	28	7.3	26	68	22	124	25	5	7	61	1.46
37273567--37273826	76	3.4	76	97	1	488	26	6	6	59	1.48
37273567--37273861	152	1.9	150	88	7	445	27	7	7	58	1.52
37277695--37277729	5	7.0	5	93	0	61	77	0	20	2	0.90
37278450--37278490	16	2.7	15	88	7	64	41	21	4	31	1.74
37278652--37279113	45	10.3	45	85	6	598	29	16	24	30	1.96
37278652--37279113	90	5.1	90	92	2	730	29	16	24	30	1.96
37279169--37279541	50	7.5	50	73	3	286	29	22	23	23	1.99
37279168--37279559	100	4.0	100	84	3	515	29	23	23	23	1.99
37279575--37279871	129	2.3	127	90	1	450	34	21	19	24	1.96
37281468--37281531	25	2.8	23	88	11	89	29	4	1	64	1.23
37286654--37286723	15	4.5	15	68	10	50	51	7	1	40	1.38
37291712--37291827	59	1.9	59	82	8	144	54	1	2	41	1.24
37292254--37292300	23	2.0	23	91	0	76	0	27	19	53	1.45
37294095--37294146	14	3.9	14	85	14	83	44	11	13	30	1.79
37294089--37294151	25	2.5	25	94	2	108	44	11	12	31	1.78
37294089--37294167	25	3.1	25	88	3	77	48	11	11	29	1.74
37294593--37294643	13	3.9	13	92	0	84	39	25	9	25	1.86
37294593--37294643	26	2.0	26	96	0	93	39	25	9	25	1.86
37295948--37295993	20	2.3	20	84	0	56	23	19	17	39	1.92
37295940--37296013	30	2.5	30	84	8	80	22	20	18	37	1.94
37296210--37296256	20	2.3	20	85	0	67	29	36	12	21	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37299335--37299450	57	2.0	57	100	0	232	28	21	5	44	1.73
37301491--37301526	5	7.2	5	100	0	72	38	0	22	38	1.54
37305111--37305150	19	2.0	20	86	13	57	72	5	5	17	1.21
37308059--37308126	15	4.4	15	71	16	50	52	5	0	41	1.25
37308521--37308601	31	2.5	32	82	7	85	51	14	4	28	1.63
37308626--37308665	13	2.9	14	85	7	55	40	17	7	35	1.78
37314274--37314311	16	2.4	16	86	8	51	44	18	0	36	1.50
37316180--37316236	21	2.7	21	88	0	87	15	15	43	24	1.86
37322158--37322202	23	2.0	23	82	8	56	33	4	11	51	1.58
37322874--37322973	42	2.4	42	89	0	146	29	18	22	31	1.97
37322920--37323028	56	1.9	56	92	0	182	29	17	22	30	1.97
37322976--37323118	41	3.5	41	82	7	150	28	20	25	25	1.99
37332040--37332070	14	2.3	13	94	5	53	74	0	22	3	0.96
37332040--37332081	15	3.0	14	86	6	50	71	0	26	2	0.98
37332519--37332546	13	2.2	13	100	0	56	25	7	21	46	1.76
37333704--37333751	24	2.0	24	87	0	69	43	8	22	25	1.81
37333823--37333954	42	3.2	42	82	3	160	17	21	17	43	1.87
37335139--37335182	21	2.2	20	84	12	54	47	11	4	36	1.60
37339767--37339793	8	3.4	8	100	0	54	37	0	11	51	1.37
37347028--37347243	107	2.1	101	83	6	263	36	15	21	27	1.93
37354080--37354106	4	6.8	4	100	0	54	22	0	0	77	0.76
37355323--37355363	21	2.0	21	95	0	73	53	4	12	29	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37358300--37358345	21	2.2	21	88	3	67	76	2	0	21	0.90
37359998--37360033	13	2.8	13	91	8	56	47	5	8	38	1.57
37361129--37361292	50	3.3	50	89	1	240	25	26	20	28	1.99
37361139--37361284	25	5.8	25	80	6	161	25	27	19	27	1.99
37361127--37361296	75	2.3	75	82	8	220	25	26	20	27	1.99
37369434--37369515	13	6.7	12	78	13	69	34	2	0	63	1.08
37369434--37369468	11	3.3	11	88	8	54	34	2	0	62	1.10
37369420--37369476	24	2.3	24	85	8	71	31	3	5	59	1.36
37369434--37369475	21	2.0	21	81	9	50	33	4	0	61	1.17
37370876--37370910	16	2.2	16	89	0	52	20	14	20	45	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185