genome.fa.s5.2.7.7.80.10.50.1000.166.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  166  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49706355--49706379	4	6.2	4	100	0	50	28	0	48	24	1.52
49707872--49707902	2	15.5	2	100	0	62	0	48	0	51	1.00
49717741--49717950	105	2.0	104	98	0	402	23	21	10	44	1.83
49721777--49721807	16	1.9	16	93	0	53	48	16	0	35	1.46
49724493--49724546	27	2.0	27	100	0	108	44	11	11	33	1.75
49725341--49725399	24	2.5	24	83	5	75	8	15	0	76	1.01
49728961--49729025	33	2.0	33	87	0	94	40	4	6	49	1.48
49731443--49731483	21	1.9	22	90	5	66	43	21	4	29	1.73
49735742--49735786	13	3.3	14	77	22	51	60	0	4	35	1.17
49736342--49736485	53	2.9	49	83	9	152	29	27	15	27	1.96
49736377--49736527	53	2.8	53	89	4	214	30	27	15	27	1.96
49745382--49745445	18	3.4	18	73	12	65	35	25	25	14	1.93
49745402--49745466	21	3.2	21	72	12	73	40	20	26	13	1.89
49745384--49745479	39	2.5	39	94	0	165	37	21	25	15	1.93
49757398--49757437	12	3.2	12	85	3	53	65	0	0	35	0.93
49757405--49757442	12	3.1	13	85	7	53	65	0	0	34	0.93
49763112--49763177	32	2.1	32	100	0	132	18	16	25	39	1.91
49767157--49767210	17	3.1	18	81	10	58	44	3	1	50	1.30
49775974--49776037	31	2.1	31	100	0	128	18	28	9	43	1.81
49776161--49776317	52	3.0	51	81	7	188	29	26	17	26	1.98
49776179--49776332	52	2.9	52	85	2	202	27	27	18	25	1.98
49776384--49776439	28	2.0	28	96	0	103	32	16	7	44	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49781064--49781114	24	2.2	23	82	6	59	45	17	5	31	1.72
49781092--49781131	17	2.4	17	86	0	53	42	17	5	35	1.71
49781099--49781142	17	2.5	17	85	3	52	38	18	6	36	1.77
49781882--49781945	31	2.1	31	96	0	119	35	0	7	56	1.28
49792815--49792978	51	3.2	51	92	0	274	33	12	22	31	1.91
49794876--49794914	5	7.4	5	85	8	51	35	0	2	61	1.10
49794876--49794918	11	4.0	11	81	6	52	37	0	2	60	1.10
49794876--49794918	21	2.0	22	86	4	61	37	0	2	60	1.10
49800353--49800392	14	2.9	15	82	14	50	47	0	0	52	1.00
49800318--49800385	16	4.2	17	74	22	67	41	0	1	57	1.08
49800832--49800865	17	1.9	18	94	5	61	32	0	0	67	0.91
49804753--49804793	21	2.0	21	90	0	64	19	29	21	29	1.98
49819258--49819344	33	2.6	32	82	10	104	49	3	1	45	1.26
49824828--49824889	27	2.3	26	86	5	88	38	25	9	25	1.86
49824828--49824889	13	4.7	13	76	4	70	38	25	9	25	1.86
49829381--49829488	55	2.0	55	100	0	216	31	14	20	33	1.93
49834455--49834495	21	2.0	21	85	0	55	73	4	12	9	1.24
49845417--49845445	13	2.2	13	100	0	58	55	20	0	24	1.44
49846122--49846149	3	9.3	3	100	0	56	0	32	0	67	0.91
49847708--49847733	12	2.2	12	100	0	52	7	42	7	42	1.62
49852898--49852934	15	2.3	17	86	9	51	35	8	2	54	1.44
49856452--49856512	19	3.3	19	75	11	54	68	4	1	24	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49857211--49857245	19	1.9	19	88	11	56	34	2	2	60	1.26
49857263--49857301	20	2.0	20	90	5	62	38	2	5	53	1.37
49857129--49857307	27	6.5	28	66	21	67	33	4	3	58	1.37
49857272--49857324	18	2.8	19	82	8	63	35	3	3	56	1.35
49858116--49858174	29	2.0	30	86	3	84	28	6	15	49	1.70
49858307--49858401	31	3.1	31	77	3	86	44	15	8	31	1.77
49861902--49861943	12	3.5	12	93	0	75	47	30	21	0	1.51
49861901--49861955	24	2.3	24	80	0	74	49	32	18	0	1.48
49864004--49864178	92	1.9	92	80	4	201	30	12	12	44	1.80
49872938--49872983	17	2.8	18	84	15	64	28	41	30	0	1.56
49874242--49874268	13	2.1	13	100	0	54	48	7	7	37	1.59
49876651--49876693	18	2.5	17	85	7	52	67	4	2	25	1.22
49880013--49880124	31	3.6	31	93	0	188	25	21	28	25	1.99
49880146--49880364	47	4.7	47	86	7	229	28	14	26	30	1.95
49880236--49880399	42	3.7	43	84	9	190	29	14	27	28	1.95
49880146--49880364	91	2.4	92	83	9	259	28	14	26	30	1.95
49881007--49881173	85	2.0	85	97	0	316	37	13	25	24	1.91
49881565--49881907	127	2.7	127	83	0	382	38	20	14	26	1.91
49882447--49882527	27	3.1	26	78	8	83	60	3	8	27	1.43
49882447--49882498	27	1.9	27	92	7	88	63	0	5	30	1.18
49883149--49883187	3	13.0	3	100	0	78	66	0	0	33	0.92
49885643--49885843	108	1.9	108	93	0	348	43	10	3	42	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49888663--49888745	42	2.0	42	83	4	105	24	26	8	40	1.83
49889346--49889387	21	2.0	21	100	0	84	14	28	23	33	1.94
49890597--49890655	29	2.0	30	93	3	102	30	3	13	52	1.57
49891848--49891914	28	2.3	29	80	12	84	35	4	5	53	1.46
49892111--49892171	29	2.2	26	82	8	68	40	3	16	39	1.65
49895539--49895575	18	2.1	18	90	5	58	27	0	10	62	1.28
49897118--49897161	19	2.3	19	80	7	54	56	11	2	29	1.46
49902229--49902430	101	2.0	99	88	3	298	33	11	17	37	1.86
49911251--49911285	13	2.7	13	86	0	52	31	0	0	68	0.90
49911947--49912011	24	2.8	24	75	13	64	44	0	0	55	0.99
49912578--49912616	20	2.0	20	85	10	53	48	0	0	51	1.00
49913668--49913715	19	2.6	19	80	12	64	64	2	0	33	1.05
49916074--49916314	115	2.1	115	98	0	464	36	4	5	53	1.47
49928119--49928175	30	1.9	30	85	7	80	22	3	50	22	1.64
49930657--49930765	51	2.1	51	98	1	209	43	11	19	26	1.84
49934596--49934621	4	6.5	4	100	0	52	23	0	0	76	0.78
49936188--49936264	40	1.9	41	84	7	104	37	1	7	53	1.38
49938724--49938751	6	4.7	6	100	0	56	35	17	32	14	1.90
49939810--49939873	18	3.5	19	73	16	64	50	3	0	46	1.17
49964701--49964740	9	4.3	9	83	3	53	62	2	0	35	1.09
49968816--49968921	40	2.7	40	87	0	167	24	2	64	8	1.36
49970415--49970439	12	2.1	12	100	0	50	52	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49970443--49970475	14	2.2	15	89	10	50	72	0	0	27	0.85
49975551--49975630	30	2.7	30	100	0	160	35	17	28	18	1.94
49980983--49981167	50	3.7	50	99	0	361	16	32	23	26	1.96
49981262--49981293	13	2.5	13	94	0	55	56	12	0	31	1.37
49984766--49984827	21	3.0	21	92	0	97	11	46	4	37	1.61
49989316--49989359	21	2.1	21	100	0	88	50	0	4	45	1.22
49993907--49994032	51	2.5	51	82	0	162	40	6	13	39	1.70
50005723--50005776	25	2.2	26	86	6	76	57	18	11	12	1.64
50006201--50006297	35	2.8	35	91	0	158	15	48	11	24	1.78
50006933--50007000	26	2.6	26	95	2	118	55	0	27	16	1.41
50007882--50007934	3	17.7	3	92	0	79	32	3	0	64	1.12
50012094--50012244	53	2.8	53	89	4	214	29	27	16	25	1.97
50016770--50016954	90	2.1	89	79	5	194	31	17	24	25	1.97
50019066--50019108	22	2.0	22	81	9	52	25	6	2	65	1.30
50024211--50024237	4	6.8	4	100	0	54	22	0	0	77	0.76
50027820--50027847	2	14.0	2	100	0	56	50	0	50	0	1.00
50037982--50038028	15	3.1	15	87	9	60	70	0	29	0	0.88
50038843--50038888	22	2.1	22	100	0	92	45	0	13	41	1.43
50052247--50052357	55	2.0	55	98	0	213	49	8	18	24	1.74
50057670--50057710	20	2.0	20	85	0	55	29	7	2	60	1.36
50061431--50061482	16	3.2	16	94	0	86	28	0	36	34	1.58
50061463--50061557	45	2.1	44	88	1	136	34	5	27	32	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50061695--50061749	25	2.2	25	84	9	69	52	1	0	45	1.11
50061880--50062040	47	3.6	46	69	18	140	48	3	3	45	1.34
50065004--50065122	60	2.0	61	81	5	143	42	12	5	39	1.67
50066519--50066560	17	2.4	18	80	11	52	14	9	4	71	1.28
50067514--50067542	14	2.0	15	93	6	51	75	0	13	10	1.04
50067623--50067668	18	2.5	19	80	13	53	34	2	4	58	1.30
50073646--50073699	21	2.6	21	79	5	65	64	5	1	27	1.26
50073875--50073909	16	2.1	17	89	5	54	74	2	0	22	0.95
50073875--50073917	17	2.5	17	81	11	52	76	2	0	20	0.89
50075208--50075264	30	1.9	30	82	13	73	15	24	29	29	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185