genome.fa.s5.2.7.7.80.10.50.1000.124.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  124  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38235523--38235581	30	2.0	30	89	0	91	27	3	10	59	1.46
38240039--38240143	42	2.5	42	83	6	124	40	20	26	11	1.87
38239943--38240284	165	2.1	165	97	0	639	41	19	26	12	1.87
38241841--38241908	34	2.0	34	100	0	136	41	2	29	26	1.70
38250510--38250576	25	2.7	25	83	4	73	28	16	20	34	1.95
38253567--38253642	38	2.0	37	82	14	93	38	22	7	31	1.83
38253830--38253969	41	3.4	41	89	5	196	20	29	18	32	1.96
38257720--38257901	93	2.0	93	96	0	337	36	20	9	32	1.86
38263859--38263999	41	3.5	41	80	8	155	22	27	20	29	1.99
38277235--38277301	1	67.0	1	72	0	53	86	4	2	5	0.77
38277236--38277291	8	6.9	8	82	11	69	85	3	3	7	0.81
38277236--38277300	8	7.9	8	77	13	60	86	4	3	6	0.79
38278683--38278828	45	3.2	46	91	5	237	27	17	26	28	1.98
38278923--38279502	100	5.8	99	82	4	643	30	22	21	25	1.99
38278924--38279502	50	11.7	50	68	6	253	30	22	21	25	1.99
38278924--38279502	199	2.9	196	84	3	716	30	22	21	25	1.99
38279608--38279805	44	4.6	41	77	9	166	29	23	21	26	1.99
38279518--38279824	129	2.4	129	86	1	427	30	22	19	27	1.98
38284219--38284258	3	13.3	3	100	0	80	0	32	0	67	0.91
38284957--38285038	30	2.7	30	77	3	85	29	21	25	23	1.99
38285005--38285064	28	2.1	29	87	3	86	30	20	26	23	1.98
38285172--38285273	26	3.9	26	81	0	123	38	23	21	16	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38285698--38285734	14	2.4	17	86	13	53	48	0	0	51	1.00
38285884--38285934	14	3.6	14	74	7	50	68	0	13	17	1.21
38285923--38285956	16	2.1	16	88	5	50	76	5	14	2	1.09
38286656--38286717	3	21.0	3	86	3	90	33	0	3	62	1.11
38286858--38286915	23	2.5	24	80	11	75	43	0	24	32	1.55
38286861--38286928	23	2.8	23	82	13	66	44	0	23	32	1.54
38287072--38287167	39	2.5	39	80	6	108	20	23	28	27	1.99
38293189--38293225	14	2.4	17	86	13	53	48	0	0	51	1.00
38293375--38293425	14	3.6	14	74	7	50	68	0	13	17	1.21
38293414--38293447	16	2.1	16	88	5	50	76	5	14	2	1.09
38294147--38294208	3	21.0	3	86	3	90	33	0	3	62	1.11
38294349--38294406	23	2.5	24	80	11	75	43	0	24	32	1.55
38294352--38294419	23	2.8	23	82	13	66	44	0	23	32	1.54
38294563--38294658	39	2.5	39	80	6	108	20	23	28	27	1.99
38300680--38300716	14	2.4	17	86	13	53	48	0	0	51	1.00
38300866--38300916	14	3.6	14	74	7	50	68	0	13	17	1.21
38300905--38300938	16	2.1	16	88	5	50	76	5	14	2	1.09
38302033--38302128	39	2.5	39	80	6	108	20	23	28	27	1.99
38303169--38303339	27	6.3	27	83	9	197	23	16	19	40	1.91
38303143--38303325	54	3.4	53	83	4	188	22	18	19	40	1.91
38303143--38303299	81	1.9	81	88	2	235	22	19	19	39	1.92
38303169--38303339	54	3.2	54	85	6	222	23	16	19	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38303337--38303380	7	6.3	7	91	0	70	18	0	36	45	1.49
38303486--38304097	27	22.7	27	81	4	574	22	16	18	41	1.90
38318923--38318990	9	7.3	9	69	18	50	57	1	1	39	1.17
38318923--38318969	17	2.6	17	84	15	60	63	2	0	34	1.06
38319400--38319578	98	1.8	98	90	0	286	37	9	15	37	1.80
38320891--38320968	29	2.7	29	80	9	97	33	21	10	34	1.87
38322084--38322241	43	3.7	42	88	2	226	26	30	19	23	1.98
38322084--38322261	86	2.1	85	89	3	268	27	30	18	23	1.97
38322084--38322261	43	4.2	42	85	3	212	27	30	18	23	1.97
38322266--38322308	13	2.9	14	83	16	52	55	4	0	39	1.20
38322535--38322567	12	2.6	13	85	4	50	72	3	0	24	0.98
38325786--38326899	147	7.5	148	92	1	1819	29	16	16	36	1.92
38325786--38326899	295	3.8	295	93	1	1837	29	16	16	36	1.92
38327334--38327404	14	4.9	14	77	14	65	35	42	0	22	1.54
38327349--38327397	7	6.9	7	76	4	53	32	46	0	20	1.51
38327360--38327405	22	2.1	22	83	0	56	39	43	0	17	1.49
38327662--38327733	7	10.0	7	72	11	56	31	50	0	18	1.47
38327662--38327761	15	6.9	15	74	11	57	34	46	0	20	1.51
38327912--38328447	114	4.7	114	88	3	749	27	26	21	24	1.99
38329877--38329930	27	2.0	27	82	7	65	18	0	31	50	1.48
38329910--38329973	21	3.0	21	84	8	76	17	0	37	45	1.48
38332077--38332102	10	2.6	10	100	0	52	26	11	19	42	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38332981--38333243	87	3.0	87	97	1	492	44	14	28	12	1.81
38333593--38333730	44	3.2	44	87	1	197	29	18	26	25	1.98
38338714--38338767	26	2.1	26	83	10	67	12	22	24	40	1.89
38354304--38354343	19	2.2	19	86	4	55	22	0	0	77	0.77
38357903--38357955	19	2.8	20	83	13	67	30	22	5	41	1.77
38362291--38362610	43	7.5	43	88	1	401	27	31	16	24	1.97
38367478--38367506	15	2.0	15	93	6	51	34	34	0	31	1.58
38367908--38368103	41	4.8	41	90	0	284	29	31	21	17	1.97
38368079--38368201	65	1.9	65	94	0	219	34	24	21	19	1.97
38368206--38368265	31	1.9	31	96	0	111	15	16	25	43	1.86
38372961--38372990	11	2.7	11	94	0	51	80	13	0	6	0.91
38377980--38378022	20	2.2	20	86	0	59	65	6	0	27	1.18
38380090--38380145	29	1.9	29	89	7	87	41	0	8	50	1.34
38385719--38385771	25	2.2	24	86	3	70	35	15	24	24	1.94
38388043--38388096	28	1.9	28	84	0	72	42	12	12	31	1.81
38392154--38392187	16	2.1	16	89	10	52	20	0	8	70	1.13
38392160--38392197	13	3.0	13	85	14	53	23	0	5	71	1.07
38411770--38411810	3	13.7	3	100	0	82	68	0	0	31	0.90
38413559--38413949	23	16.7	23	75	10	285	40	17	14	27	1.88
38413522--38413949	93	4.6	93	94	2	732	39	17	14	28	1.89
38413550--38413938	188	2.1	188	97	0	724	40	17	14	27	1.88
38414639--38414734	28	3.4	28	92	0	156	30	25	12	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38416309--38416360	21	2.5	20	79	14	61	38	0	17	44	1.49
38416919--38416974	25	2.3	25	87	3	78	19	23	21	35	1.96
38416969--38417024	24	2.3	25	84	3	78	17	23	25	33	1.96
38422917--38422965	25	2.0	25	84	8	64	53	14	6	26	1.64
38423161--38423269	41	2.7	41	85	2	157	23	29	18	28	1.98
38423161--38423318	82	1.9	82	80	12	182	25	28	17	28	1.97
38433318--38433367	26	1.9	26	87	0	73	20	20	20	40	1.92
38433318--38433374	26	2.2	26	83	0	69	17	22	19	40	1.91
38433318--38433455	26	5.5	25	68	15	63	19	25	20	34	1.96
38436183--38436261	26	3.0	26	85	3	97	45	20	2	31	1.64
38436243--38436290	20	2.4	20	75	0	51	41	18	0	39	1.51
38437007--38437033	4	6.8	4	100	0	54	77	0	0	22	0.76
38442251--38442427	23	7.4	23	66	21	89	40	16	16	25	1.89
38442274--38442408	25	5.5	25	71	7	125	42	15	16	25	1.87
38442249--38442427	48	3.7	48	93	1	306	41	16	16	25	1.89
38449637--38449837	48	4.2	48	90	2	298	40	15	17	26	1.90
38449684--38449818	25	5.5	25	70	7	116	41	14	16	27	1.87
38449709--38449837	23	5.4	23	67	10	98	39	15	17	27	1.90
38450441--38450594	43	3.7	42	74	12	138	26	28	16	28	1.97
38455760--38455812	19	2.5	22	85	11	67	3	18	3	73	1.14
38455762--38455815	23	2.3	23	75	6	56	3	16	3	75	1.08
38457045--38457109	22	2.8	24	77	11	73	32	13	15	38	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38458086--38458124	15	2.6	15	87	0	51	38	0	7	53	1.30
38458691--38458731	16	2.5	17	81	14	50	39	0	21	39	1.54
38474499--38474530	6	5.3	6	100	0	64	0	15	0	84	0.63
38478245--38478288	19	2.2	20	84	4	63	34	4	4	56	1.40
38479489--38479535	23	2.0	23	100	0	94	38	31	17	12	1.87
38480263--38480497	119	2.0	119	93	1	400	39	10	17	32	1.84
38485093--38485204	56	2.0	56	96	0	206	29	4	23	42	1.73
38488639--38488682	11	3.7	11	77	16	52	36	2	0	61	1.09
38488639--38488692	25	2.1	26	89	3	83	35	1	0	62	1.06
38489822--38489856	16	2.2	16	89	0	52	54	0	2	42	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185