genome.fa.s5.2.7.7.80.10.50.1000.125.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  125  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38496556--38496671	19	5.8	19	67	23	69	32	0	12	54	1.39
38496625--38496676	21	2.4	21	93	3	86	30	0	11	57	1.34
38496664--38496785	60	2.0	60	87	3	174	31	0	13	54	1.46
38496818--38496899	38	2.2	38	97	0	155	54	3	2	39	1.31
38496936--38496977	16	2.7	15	85	7	57	38	2	2	57	1.25
38497107--38497291	21	8.2	21	74	20	119	53	14	0	31	1.45
38497134--38497223	8	10.4	8	69	19	56	47	15	1	35	1.53
38497112--38497282	71	2.5	66	79	14	202	52	14	0	33	1.46
38497160--38497365	19	10.7	19	72	19	128	53	12	0	33	1.38
38497160--38497242	27	3.1	27	92	1	141	51	12	0	36	1.39
38497207--38497292	40	2.2	38	91	4	136	54	11	0	33	1.37
38498092--38498137	20	2.3	20	88	0	65	8	15	15	60	1.57
38498350--38498446	19	4.7	21	77	15	96	35	10	17	37	1.84
38498349--38498420	19	3.7	19	87	7	108	34	12	16	36	1.87
38499868--38499914	24	2.0	24	91	0	76	25	4	14	55	1.58
38503200--38503400	43	4.7	43	90	2	289	19	19	28	32	1.96
38504459--38504502	24	1.9	24	90	9	74	36	0	2	61	1.09
38504599--38504626	9	3.1	9	100	0	56	57	10	0	32	1.33
38504569--38504769	59	3.1	68	84	13	298	45	8	5	40	1.58
38504758--38504799	16	2.6	16	92	0	66	42	7	2	47	1.43
38504773--38504830	22	2.6	23	83	5	75	43	1	1	53	1.21
38506281--38506401	63	1.9	63	84	0	161	39	15	15	28	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38516686--38516728	20	2.1	20	86	4	59	48	6	18	25	1.73
38516749--38516806	20	2.9	20	80	10	64	36	1	18	43	1.61
38516759--38517414	40	16.3	39	68	15	207	39	5	14	40	1.70
38516928--38516983	20	2.8	20	86	0	76	42	7	10	39	1.67
38516898--38516992	20	4.8	20	77	0	73	40	5	12	42	1.65
38517136--38517271	59	2.3	59	83	3	157	38	5	11	44	1.63
38517092--38517418	20	16.4	20	71	5	151	37	6	14	40	1.72
38517092--38517418	60	5.5	61	69	11	174	37	6	14	40	1.72
38517482--38517583	20	5.1	20	76	7	82	37	4	18	39	1.73
38517476--38517583	40	2.7	40	76	0	108	37	4	17	39	1.71
38517617--38517793	20	8.9	19	75	12	97	40	4	16	38	1.69
38517616--38517798	40	4.6	39	78	8	154	39	4	16	39	1.68
38517617--38517798	60	3.0	60	78	6	190	40	4	16	39	1.69
38517640--38517800	20	8.1	20	76	4	101	39	3	16	40	1.66
38524107--38524145	19	2.1	19	85	9	53	43	0	12	43	1.42
38524226--38524516	45	6.5	45	93	2	471	33	16	21	28	1.95
38524226--38524516	136	2.2	136	94	2	507	33	16	21	28	1.95
38527097--38527311	91	2.3	92	82	3	252	29	14	23	32	1.95
38527401--38527488	38	2.3	39	82	2	97	31	13	20	34	1.92
38535656--38535719	31	2.1	30	85	8	85	17	7	10	64	1.48
38543908--38543945	17	2.2	18	86	13	53	18	7	13	60	1.56
38547427--38547485	29	2.0	30	90	3	93	59	6	0	33	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38550174--38550222	24	2.0	24	88	0	71	26	6	32	34	1.81
38552561--38552614	25	2.1	26	83	10	67	29	1	0	68	1.00
38555184--38555464	124	2.3	125	84	4	363	28	14	23	32	1.95
38556249--38556288	17	2.4	17	95	0	71	17	27	30	25	1.97
38562304--38562340	13	2.8	13	83	0	56	18	0	0	81	0.70
38571166--38571215	26	1.9	26	83	0	64	16	46	22	16	1.84
38571952--38571984	15	2.3	15	89	5	50	18	6	6	69	1.30
38572065--38572106	19	2.2	20	82	4	50	30	7	11	50	1.66
38572669--38572741	14	5.5	13	73	15	51	60	1	2	35	1.20
38572676--38572770	40	2.3	40	92	1	163	58	1	3	36	1.21
38572727--38572752	11	2.4	11	100	0	52	53	0	7	38	1.30
38580340--38580448	41	2.7	41	91	2	175	22	30	19	27	1.98
38580340--38580485	41	3.6	40	82	10	165	23	29	19	27	1.98
38580340--38580497	82	1.9	81	83	12	207	24	28	18	28	1.98
38580692--38580770	34	2.3	34	80	8	81	39	17	3	39	1.68
38585085--38585177	31	3.0	31	70	9	82	41	6	13	37	1.71
38585074--38585201	61	2.1	61	84	5	161	37	5	14	42	1.68
38587235--38587267	16	2.0	17	94	5	59	0	15	0	84	0.61
38593066--38593129	32	2.0	32	93	0	110	39	10	26	23	1.88
38596549--38596606	29	2.0	29	100	0	116	24	27	17	31	1.97
38599510--38599537	7	4.0	7	100	0	56	28	0	0	71	0.86
38608568--38608663	9	10.4	9	78	12	106	35	31	8	25	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38608624--38608661	20	1.9	20	94	0	67	39	28	10	21	1.86
38609423--38609462	16	2.5	16	95	0	71	25	5	35	35	1.78
38617027--38617065	20	2.0	20	84	0	51	17	5	2	74	1.12
38619292--38619359	29	2.3	29	87	5	91	42	19	14	23	1.88
38619192--38619453	91	2.9	91	82	3	260	40	14	14	30	1.86
38623443--38623957	170	3.0	170	96	0	958	25	16	17	40	1.90
38624240--38624283	20	2.2	21	80	12	56	56	6	0	36	1.26
38624935--38624992	18	3.1	19	78	9	57	77	1	12	8	1.06
38625397--38625453	27	2.1	28	90	3	89	42	10	0	47	1.38
38625443--38625493	25	2.0	26	84	3	68	80	5	3	9	1.01
38625621--38625799	18	10.0	17	70	17	82	65	0	33	0	0.97
38625623--38625800	24	7.5	23	65	20	73	66	0	32	0	0.96
38625626--38625699	14	5.1	13	71	25	51	68	0	31	0	0.89
38625626--38625705	34	2.8	28	75	24	85	67	0	32	0	0.91
38625641--38625801	38	4.3	38	82	6	179	67	0	32	0	0.96
38625643--38625743	10	10.5	10	72	16	79	65	0	33	0	1.00
38625641--38625800	34	4.5	34	77	14	144	66	0	32	0	0.96
38625623--38625777	10	15.7	10	68	19	60	67	0	32	0	0.96
38626474--38626528	27	2.0	27	82	0	65	29	0	7	63	1.21
38626481--38626532	19	2.7	19	87	0	68	25	0	7	67	1.17
38626568--38626633	26	2.5	27	90	4	109	43	10	0	45	1.38
38626634--38626667	17	2.0	17	94	0	59	85	5	2	5	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38627853--38627899	24	2.0	24	95	0	85	53	0	8	38	1.32
38629207--38629246	13	3.1	13	77	0	53	35	25	7	32	1.84
38629515--38629594	17	4.5	17	67	26	51	45	1	2	51	1.22
38640801--38640839	18	2.1	19	85	4	53	33	0	0	66	0.92
38646014--38646043	14	2.1	14	93	0	51	23	13	13	50	1.77
38647138--38647218	40	2.0	40	100	0	162	35	19	4	39	1.74
38647927--38647999	24	3.0	24	75	13	69	35	21	24	17	1.95
38648155--38648195	19	2.1	19	86	4	55	39	7	4	48	1.52
38654069--38654106	16	2.2	18	90	9	62	39	10	5	44	1.61
38655191--38655343	76	2.0	76	97	0	288	36	12	11	39	1.80
38660280--38660544	132	2.0	132	97	0	503	20	14	18	47	1.83
38661886--38661948	21	3.0	21	90	0	99	17	15	49	17	1.80
38662737--38662799	33	1.9	33	100	0	126	38	7	30	23	1.84
38662808--38662994	93	2.0	93	98	0	365	19	19	19	41	1.90
38663143--38663174	16	2.1	16	88	11	50	46	6	9	37	1.61
38663296--38663348	20	2.7	20	94	5	90	35	0	5	58	1.22
38663463--38663507	23	2.0	23	91	8	74	26	8	17	46	1.78
38673013--38673311	46	6.6	46	97	1	552	29	22	15	32	1.95
38681674--38681715	19	2.2	19	83	8	50	52	0	4	42	1.22
38689330--38689382	27	2.0	27	84	0	70	22	28	30	18	1.98
38691531--38691663	60	2.2	60	93	1	221	55	10	0	33	1.39
38691747--38691802	13	4.2	13	76	15	60	0	30	0	69	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38691752--38691803	27	1.9	27	85	14	72	0	34	0	65	0.93
38711833--38711899	34	1.9	35	87	3	100	31	8	14	44	1.76
38712895--38712921	13	2.1	13	100	0	54	22	29	22	25	1.99
38716020--38716047	7	4.0	7	100	0	56	14	0	0	85	0.59
38716599--38716638	9	4.8	9	84	12	50	50	0	0	50	1.00
38722458--38722580	44	2.8	44	81	7	153	24	17	26	31	1.97
38725251--38725280	13	2.2	14	94	5	53	43	0	6	50	1.28
38733995--38734153	26	6.4	26	69	13	102	18	19	22	39	1.92
38738894--38739042	76	2.0	76	82	7	187	36	6	18	38	1.77
38739220--38739298	41	1.9	41	82	5	97	22	17	25	34	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185