genome.fa.s5.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  108  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33961073--33961338	140	1.9	141	94	0	471	54	1	9	34	1.43
33961924--33962076	76	2.0	76	98	0	297	24	20	22	32	1.98
33962936--33963123	90	2.1	90	86	0	268	27	23	18	30	1.97
33963030--33963753	44	16.5	44	65	21	225	28	25	16	29	1.97
33963030--33963757	132	5.5	132	92	0	1213	28	25	16	29	1.97
33963760--33964477	89	8.1	89	87	0	1015	22	22	25	29	1.99
33975686--33975723	13	2.8	14	80	19	53	65	5	7	21	1.38
33976993--33977071	38	2.1	38	97	0	149	22	5	11	60	1.50
33977940--33978051	44	2.5	44	80	8	129	30	16	19	33	1.95
33978250--33978433	100	1.8	100	84	2	253	26	23	21	28	1.99
33978243--33978466	100	2.2	100	78	3	243	27	23	21	27	1.99
33978066--33978870	267	3.0	265	89	1	1200	26	25	20	28	1.99
33978523--33978701	50	3.6	50	71	4	128	25	24	20	29	1.99
33980213--33980253	13	3.2	13	85	0	55	4	14	0	80	0.87
33980219--33980260	18	2.2	20	87	8	61	7	9	0	83	0.81
33981063--33981128	25	2.6	25	88	9	89	59	4	15	21	1.54
33985857--33986049	107	1.8	107	91	0	323	32	15	17	34	1.91
33986745--33986782	13	2.8	14	80	19	53	65	5	7	21	1.38
33986870--33986896	14	1.9	14	100	0	54	81	0	7	11	0.87
33988793--33988826	4	8.0	4	90	9	50	23	0	2	73	0.97
33988776--33988835	22	2.7	22	73	19	61	26	0	6	66	1.16
33991161--33991199	18	2.2	18	85	0	51	61	2	23	12	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33992599--33992632	4	8.0	4	90	9	50	23	0	2	73	0.97
33992582--33992641	22	2.7	22	73	19	61	26	0	6	66	1.16
33993767--33993817	23	2.2	23	82	0	57	62	3	0	33	1.13
33995585--33995636	25	2.1	24	89	3	77	61	11	13	13	1.57
33999500--33999528	14	2.1	14	100	0	58	37	0	20	41	1.53
34005293--34005330	16	2.5	15	83	8	51	28	0	0	71	0.87
34011775--34011813	20	2.0	20	89	0	60	48	12	10	28	1.74
34011797--34011836	14	2.9	14	84	0	53	42	17	7	32	1.77
34013255--34013403	57	2.5	59	82	12	189	31	21	24	22	1.98
34014961--34015015	19	2.8	19	81	13	67	25	5	7	61	1.44
34014962--34015023	19	3.2	19	78	15	65	27	4	6	61	1.41
34031040--34031082	18	2.5	17	80	3	50	30	4	2	62	1.28
34032609--34032643	17	2.1	17	100	0	70	34	11	14	40	1.82
34037932--34038843	50	18.3	51	70	4	581	28	22	24	23	1.99
34037935--34038851	100	9.2	100	87	2	1186	28	22	24	23	1.99
34040239--34040273	4	8.5	4	90	3	52	25	0	2	71	1.00
34040440--34040482	18	2.5	17	80	3	50	30	4	2	62	1.28
34041856--34041970	44	2.6	44	85	2	149	35	13	22	27	1.92
34041856--34041989	46	3.0	45	82	4	153	35	14	23	26	1.93
34047021--34047092	5	14.8	5	74	21	64	38	0	4	56	1.18
34047050--34047092	19	2.3	19	92	8	70	41	0	0	58	0.98
34048095--34048209	44	2.6	44	85	2	149	35	13	22	27	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34048095--34048228	46	3.0	45	82	4	153	35	14	23	26	1.93
34051981--34052076	31	3.1	31	93	0	156	43	14	10	31	1.79
34055977--34056040	22	3.0	22	83	2	76	29	1	4	64	1.23
34056005--34056047	21	2.0	21	90	0	68	39	0	4	55	1.20
34057718--34057784	33	2.0	33	97	0	125	22	23	32	20	1.98
34060348--34060393	20	2.2	21	77	11	51	36	2	13	47	1.54
34067481--34067561	28	2.9	27	87	7	117	60	16	4	18	1.53
34068377--34068435	29	2.0	30	90	3	93	50	13	5	30	1.63
34068387--34068457	29	2.4	28	79	11	79	45	14	7	33	1.71
34072941--34073022	39	2.1	39	95	0	146	37	26	7	28	1.83
34079219--34079267	25	2.0	24	87	0	62	38	24	10	24	1.86
34082595--34082619	6	4.2	6	100	0	50	20	0	0	80	0.72
34086228--34086289	18	3.5	18	73	4	72	66	0	3	30	1.08
34086227--34086294	35	1.9	36	93	3	120	64	0	2	32	1.08
34089888--34089945	30	1.9	30	85	3	80	43	8	13	34	1.75
34095638--34095804	43	3.9	43	79	7	160	34	26	15	22	1.94
34095701--34095804	44	2.4	42	84	4	136	35	25	14	24	1.93
34099564--34099632	3	23.0	3	79	16	72	63	1	4	30	1.22
34123322--34123352	16	1.9	16	93	0	53	6	3	41	48	1.45
34127167--34127205	20	2.0	20	84	0	51	35	7	15	41	1.76
34128362--34128394	15	2.2	15	89	10	50	39	0	27	33	1.57
34135070--34136061	44	22.8	45	69	13	334	27	23	20	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34135116--34136087	172	5.6	170	72	13	592	27	23	19	29	1.98
34135333--34135545	89	2.4	88	95	0	354	27	24	18	29	1.98
34135121--34135761	305	2.1	302	85	6	866	27	22	19	29	1.98
34135740--34136014	84	3.2	85	66	15	233	28	24	20	27	1.99
34137285--34137319	11	3.1	11	95	4	61	0	20	0	80	0.72
34144595--34144660	31	2.1	31	85	0	87	40	13	12	33	1.82
34145962--34146164	30	6.7	30	76	7	162	45	10	3	40	1.56
34145946--34146180	60	3.9	60	76	11	203	42	11	3	41	1.60
34145932--34146164	30	7.8	28	73	11	160	45	11	3	39	1.58
34146089--34146164	31	2.6	28	81	10	89	51	13	0	35	1.41
34152177--34152205	13	2.2	13	100	0	58	44	6	6	41	1.58
34155244--34155296	26	2.0	26	100	0	106	43	3	22	30	1.71
34156865--34156973	11	9.6	11	69	11	51	66	4	3	25	1.28
34157045--34157080	13	2.7	13	91	4	54	33	0	0	66	0.92
34163645--34164512	132	6.6	132	94	0	1450	30	24	16	28	1.97
34163448--34164141	352	2.0	351	86	3	966	30	24	15	28	1.96
34164627--34164876	45	5.3	45	65	19	152	28	22	19	29	1.98
34164625--34164913	95	3.0	95	98	0	560	28	21	20	30	1.98
34164815--34165090	134	2.1	134	94	1	482	29	22	19	27	1.98
34165037--34165215	86	2.1	87	88	1	270	27	24	21	25	1.99
34169320--34169363	19	2.3	20	84	7	56	40	11	20	27	1.86
34178777--34178859	38	2.2	38	95	2	148	55	3	2	38	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34180100--34180159	22	2.7	23	82	10	79	1	31	3	63	1.20
34182106--34182341	101	2.4	97	84	6	275	36	16	18	27	1.93
34182246--34182810	111	4.9	112	83	10	685	32	15	16	35	1.90
34182433--34182800	117	3.0	124	87	6	486	30	16	17	35	1.91
34185258--34185296	11	3.5	11	82	6	51	74	2	2	20	1.06
34185270--34185305	17	2.2	17	90	5	56	77	2	0	19	0.88
34186756--34187230	89	5.3	88	71	11	320	30	20	17	32	1.95
34186750--34187233	45	10.8	44	74	9	352	29	20	17	33	1.95
34197103--34197142	21	2.0	20	85	5	53	62	0	15	22	1.32
34203511--34203626	60	1.9	60	91	0	187	31	15	26	26	1.96
34206085--34206168	26	3.2	26	84	0	114	17	25	22	34	1.96
34206209--34206263	24	2.3	24	83	0	65	14	27	25	32	1.95
34209385--34209481	13	6.8	13	70	23	54	31	6	4	57	1.42
34209385--34209491	3	34.0	3	75	14	65	33	5	3	57	1.40
34209852--34210494	124	5.2	125	92	0	941	29	16	21	31	1.96
34211036--34211067	16	2.0	16	100	0	64	31	50	6	12	1.65
34212510--34215319	21	131.2	21	82	8	2804	25	0	26	47	1.53
34212510--34215319	42	65.6	42	82	6	3112	25	0	26	47	1.53
34212510--34215319	63	43.7	63	83	6	3130	25	0	26	47	1.53
34214098--34214158	27	2.2	27	94	2	104	21	0	27	50	1.49
34215153--34215204	27	1.9	27	88	7	79	21	0	32	46	1.52
34215310--34215388	38	2.1	38	97	0	149	11	0	32	55	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34215387--34215425	19	2.2	19	86	9	55	46	0	0	53	1.00
34215924--34216023	42	2.4	41	76	3	103	17	30	30	23	1.96
34216225--34216289	34	1.9	33	84	12	87	41	9	0	49	1.35
34216219--34216285	18	3.8	18	70	20	61	43	8	0	47	1.34
34216274--34216409	53	2.6	53	81	6	134	34	7	1	56	1.36
34216357--34216386	12	2.5	12	94	0	51	50	10	0	40	1.36
34216782--34217148	189	1.9	188	87	1	538	29	18	16	36	1.92
34219486--34219528	17	2.5	17	77	7	52	76	2	2	18	1.00
34225728--34225762	14	2.5	15	86	13	56	31	11	0	57	1.34
34225736--34225761	7	3.7	7	100	0	52	26	11	0	61	1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185