genome.fa.s5.2.7.7.80.10.50.1000.63.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  63  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19829647--19829731	39	2.2	40	86	4	127	36	11	14	37	1.82
19829718--19829746	14	2.1	14	100	0	58	51	6	20	20	1.70
19834974--19835003	3	10.0	3	100	0	60	66	0	33	0	0.92
19835284--19835308	10	2.5	10	100	0	50	72	0	0	28	0.86
19840746--19840789	6	7.3	6	97	0	70	34	11	31	22	1.90
19840929--19840966	12	3.2	12	81	7	51	10	5	13	71	1.30
19841881--19841931	6	8.5	6	100	0	102	49	0	35	15	1.45
19847264--19847466	85	2.4	85	98	0	388	45	12	14	27	1.81
19850358--19850412	27	2.0	27	92	0	92	45	18	14	21	1.85
19850654--19850699	19	2.3	20	96	3	85	23	10	17	47	1.79
19852418--19852496	39	2.0	39	90	4	124	41	27	12	17	1.86
19853170--19853208	21	1.9	20	94	5	69	25	12	5	56	1.57
19867160--19867208	20	2.5	20	86	6	64	24	24	0	51	1.49
19867872--19868167	40	7.4	40	87	1	342	41	27	15	15	1.87
19871255--19871620	182	2.0	182	100	0	732	39	8	20	30	1.83
19872185--19872254	25	2.8	25	80	4	70	21	27	18	32	1.97
19872210--19872302	25	3.8	25	79	9	84	19	25	21	33	1.97
19872184--19872345	75	2.2	73	81	8	186	20	25	19	33	1.96
19872321--19872403	25	3.3	25	73	6	87	20	24	18	37	1.94
19880384--19880450	24	2.8	23	75	6	62	19	25	19	35	1.95
19889569--19889611	17	2.5	17	76	3	50	46	37	4	11	1.61
19891594--19891636	17	2.5	17	76	3	50	46	37	4	11	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19893767--19894014	50	4.9	50	80	6	232	22	28	20	27	1.99
19904304--19904350	10	4.6	10	77	12	51	36	2	2	59	1.21
19915287--19915335	24	2.0	24	92	0	80	63	8	8	20	1.48
19935770--19936032	40	6.6	40	88	3	325	26	27	20	24	1.99
19943723--19943985	40	6.6	40	88	3	325	26	27	20	24	1.99
19946553--19946586	16	2.1	16	100	0	68	35	0	17	47	1.48
19946753--19946785	14	2.2	16	89	10	52	54	0	0	45	0.99
19948975--19949034	25	2.5	24	81	10	68	63	3	0	33	1.11
19948972--19949061	23	3.8	24	75	10	69	63	2	0	34	1.07
19955720--19955765	19	2.4	19	82	7	58	47	4	0	47	1.21
19955854--19955890	13	2.9	13	92	4	58	43	24	0	32	1.55
19955882--19955921	13	3.1	13	81	0	53	42	17	7	32	1.77
19959760--19959810	10	4.6	11	77	15	52	49	13	0	37	1.43
19962718--19962754	18	2.0	19	89	5	58	21	40	0	37	1.54
19971523--19971556	17	2.0	17	100	0	68	23	0	5	70	1.09
19972841--19972891	12	3.9	13	75	15	52	37	0	37	25	1.56
19973885--19974273	27	14.4	27	78	7	396	42	20	16	20	1.89
19974507--19974587	26	3.1	26	80	3	101	19	22	24	33	1.97
19982142--19982770	210	3.0	209	89	1	972	36	9	16	37	1.81
19983575--19984203	210	3.0	210	90	0	972	37	9	15	38	1.80
19985008--19985636	210	3.0	210	90	0	972	37	9	15	38	1.80
19986441--19987069	210	3.0	210	89	1	956	36	9	15	38	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19987707--19987734	13	2.2	13	100	0	56	7	25	0	67	1.15
19996503--19996590	25	3.5	25	84	3	97	28	23	19	28	1.98
20019822--20019880	11	5.3	11	75	17	50	15	3	5	76	1.10
20019835--20019892	6	8.3	7	80	14	50	20	1	3	74	1.06
20019868--20019993	3	41.7	3	68	9	60	30	5	3	60	1.38
20021658--20021694	10	3.7	10	92	0	56	89	0	5	5	0.60
20031266--20031356	40	2.3	40	92	3	148	24	19	27	28	1.99
20040198--20040381	40	4.6	40	85	5	221	23	21	27	27	1.99
20040198--20040378	80	2.3	81	86	7	246	23	21	27	27	1.99
20042647--20042696	22	2.2	23	82	13	68	70	6	6	18	1.29
20043532--20043617	25	3.5	25	90	1	129	38	2	0	59	1.10
20046284--20046315	6	5.3	6	92	0	55	18	28	0	53	1.45
20048017--20048152	67	2.0	67	84	0	173	27	24	20	27	1.99
20050231--20050335	42	2.6	41	80	4	122	22	32	14	30	1.94
20061557--20061609	23	2.4	22	76	20	56	9	18	1	69	1.25
20065998--20066067	27	2.6	26	79	4	77	25	25	20	28	1.99
20066242--20066281	21	1.9	21	85	10	55	25	35	12	27	1.92
20069462--20069526	30	2.2	30	82	0	76	27	24	35	12	1.91
20071383--20071519	50	2.7	50	85	0	175	27	23	29	19	1.98
20081128--20081193	3	22.0	3	100	0	132	0	33	0	66	0.92
20086283--20086349	20	3.2	23	70	23	67	28	0	1	70	0.96
20086279--20086350	19	3.7	19	78	15	76	29	0	1	69	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20086301--20086369	35	2.0	35	82	5	86	26	0	2	71	1.00
20086554--20086583	4	7.5	4	100	0	60	23	0	26	50	1.50
20087402--20087457	28	2.0	28	100	0	112	32	10	17	39	1.84
20093596--20093668	34	2.1	34	80	9	78	36	5	2	54	1.38
20093840--20093864	4	6.2	4	100	0	50	76	0	24	0	0.80
20098991--20099042	25	2.1	25	96	0	95	28	15	15	40	1.88
20101235--20101448	85	2.5	85	95	0	376	33	25	18	22	1.97
20101235--20101446	43	5.0	43	81	7	272	33	25	18	22	1.97
20101458--20101624	51	3.3	51	78	9	189	31	27	17	23	1.97
20118237--20118266	14	2.1	15	93	6	53	63	0	0	36	0.95
20121431--20121498	22	3.1	22	87	2	93	30	4	45	19	1.70
20122394--20122460	14	4.7	15	72	17	54	38	38	1	20	1.62
20122469--20122497	15	1.9	15	100	0	58	44	34	0	20	1.52
20125029--20125114	28	3.1	28	75	13	79	40	0	1	58	1.06
20125228--20125321	44	2.1	44	88	4	134	35	28	6	29	1.82
20125303--20125338	16	2.2	16	95	0	63	25	33	2	38	1.70
20125543--20125631	35	2.5	36	81	3	126	31	40	2	25	1.68
20125582--20125640	28	2.1	28	87	0	82	35	40	0	23	1.55
20125566--20125619	21	2.6	21	85	5	74	31	40	1	25	1.66
20125591--20125654	14	4.6	14	77	9	51	37	39	0	23	1.55
20125611--20125691	21	3.8	21	69	11	58	39	35	0	24	1.56
20125638--20125684	15	3.3	15	85	5	62	40	31	0	27	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20125874--20125923	14	3.5	14	79	15	57	32	42	2	24	1.66
20125874--20125929	29	2.0	28	82	3	67	32	42	1	23	1.64
20125931--20125980	14	3.5	15	76	13	52	38	34	0	28	1.57
20126191--20126245	25	2.2	26	84	9	71	21	7	7	63	1.44
20126330--20126688	123	2.9	122	83	5	447	31	27	16	23	1.96
20126330--20126695	41	8.9	41	81	2	385	31	28	17	22	1.96
20126849--20126875	12	2.2	12	100	0	54	37	22	25	14	1.93
20140719--20141066	122	2.8	124	94	1	594	28	15	22	33	1.95
20144156--20144265	53	2.1	53	100	0	220	49	12	7	30	1.68
20144311--20144384	35	2.1	35	100	0	148	24	0	32	43	1.55
20144340--20144600	29	10.0	27	72	20	134	30	0	23	45	1.53
20144311--20144398	29	2.8	29	88	10	113	26	0	29	44	1.55
20144420--20144501	29	2.8	29	94	0	146	26	0	24	48	1.51
20144348--20144481	72	1.9	72	90	3	216	30	0	23	46	1.53
20144302--20144736	101	4.2	101	95	2	753	31	0	22	45	1.52
20144420--20144603	29	6.9	28	71	23	139	30	0	22	47	1.52
20144449--20144582	72	1.9	72	90	3	216	30	0	23	46	1.53
20144521--20144603	29	2.9	28	94	5	148	28	0	22	48	1.51
20144420--20144701	130	2.2	130	83	5	347	31	0	21	46	1.52
20144626--20144701	29	2.6	29	95	0	134	28	0	25	46	1.53
20145196--20145231	18	1.9	19	88	5	56	36	8	30	25	1.85
20145882--20145906	7	3.6	7	100	0	50	60	12	0	28	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20146665--20146730	10	6.5	10	75	3	60	65	0	0	34	0.93
20146665--20146729	31	2.1	31	100	0	130	66	0	0	33	0.92
20146665--20146716	21	2.5	20	75	6	59	69	0	0	30	0.89
20146343--20147296	477	2.0	477	100	0	1908	39	15	13	31	1.86
20147142--20147207	10	6.5	10	75	3	60	65	0	0	34	0.93
20147142--20147206	31	2.1	31	100	0	130	66	0	0	33	0.92
20147142--20147193	21	2.5	20	75	6	59	69	0	0	30	0.89
20147209--20147320	51	2.2	51	91	0	179	42	1	26	28	1.65
20147297--20147342	22	2.1	22	100	0	92	41	0	32	26	1.56
20160220--20160257	18	2.1	18	85	9	51	44	0	0	55	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185