genome.fa.s5.2.7.7.80.10.50.1000.144.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  144  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43759714--43759738	7	3.6	7	100	0	50	56	0	12	32	1.36
43760348--43760404	20	2.9	19	77	15	53	68	3	12	15	1.34
43764303--43764394	40	2.3	40	83	3	105	29	15	28	27	1.96
43764327--43764404	40	1.9	41	89	2	122	30	14	25	29	1.94
43764327--43764435	40	2.7	40	79	9	116	31	15	22	30	1.95
43764481--43764591	41	2.7	41	88	5	163	20	18	30	29	1.97
43764972--43765037	7	9.6	7	71	3	53	16	0	33	50	1.46
43764966--43765037	34	2.1	36	86	5	103	16	0	31	51	1.45
43765110--43765151	21	2.0	21	85	0	57	21	7	19	52	1.69
43766521--43766765	122	2.0	122	92	3	404	32	20	16	29	1.95
43768616--43768839	43	5.3	43	83	1	263	24	17	29	28	1.97
43768631--43768839	85	2.4	85	82	1	249	25	17	29	27	1.98
43769142--43769171	15	1.9	16	93	6	53	43	0	0	56	0.99
43773680--43773731	22	2.4	22	83	6	70	57	19	15	7	1.62
43775338--43775401	28	2.3	28	77	17	71	50	1	0	48	1.10
43779981--43780023	22	2.0	22	85	0	59	18	11	13	55	1.68
43780353--43780444	19	4.8	19	91	0	157	38	10	15	35	1.82
43784683--43784718	13	2.8	12	88	12	54	88	8	0	2	0.59
43785966--43786883	132	7.0	132	87	2	1272	28	16	24	30	1.97
43785966--43786883	263	3.5	264	88	2	1321	28	16	24	30	1.97
43787112--43787203	19	4.8	19	91	0	157	38	10	15	35	1.82
43787608--43787802	98	2.0	98	95	0	354	27	10	25	36	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43799094--43799141	24	2.0	24	87	0	69	41	14	27	16	1.87
43799175--43799234	26	2.3	25	86	8	84	36	21	26	15	1.93
43804077--43804121	20	2.4	19	81	7	56	73	17	2	6	1.15
43804805--43804845	21	2.0	21	85	0	55	36	17	2	43	1.62
43811031--43811098	20	3.3	20	82	11	93	45	10	8	35	1.69
43811042--43811109	21	3.3	21	84	12	104	47	11	5	35	1.65
43811031--43811109	41	1.9	41	94	0	140	45	11	7	35	1.69
43813941--43814028	40	2.2	40	97	0	167	28	22	20	28	1.99
43815914--43816709	396	2.0	397	97	0	1513	31	22	17	28	1.96
43819491--43819636	37	4.0	37	93	1	242	24	21	16	36	1.94
43819600--43819868	46	5.6	46	84	10	340	28	22	14	34	1.93
43819643--43819862	52	4.3	52	85	8	299	27	22	14	35	1.93
43819600--43819868	98	2.7	98	93	0	457	28	22	14	34	1.93
43822994--43823139	49	3.0	49	90	1	229	32	29	13	23	1.93
43824392--43824537	37	4.0	37	93	1	242	24	21	16	36	1.94
43824501--43824769	46	5.6	46	84	10	340	28	22	14	34	1.93
43824544--43824763	52	4.3	52	85	8	299	27	22	14	35	1.93
43824501--43824769	98	2.7	98	93	0	457	28	22	14	34	1.93
43832036--43832069	18	1.9	17	88	5	50	32	0	20	47	1.51
43833268--43833301	15	2.4	14	90	5	50	82	0	2	14	0.79
43841131--43841241	46	2.4	46	85	5	145	37	16	6	39	1.74
43841200--43841306	38	3.1	38	72	27	137	38	21	2	37	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43841233--43841291	27	2.1	28	96	3	111	33	23	3	38	1.72
43841633--43841675	22	2.0	22	90	0	68	9	18	27	44	1.80
43841747--43841925	43	4.2	43	89	1	243	25	28	19	26	1.99
43841747--43841925	85	2.1	86	86	1	243	25	28	19	26	1.99
43844281--43844321	21	2.0	21	95	0	73	29	43	0	26	1.55
43844519--43844572	22	2.3	24	84	9	76	62	0	0	37	0.95
43844602--43844664	22	2.9	22	85	4	83	38	42	0	19	1.51
43844677--43844717	14	2.9	15	82	10	59	39	31	0	29	1.57
43844680--43844726	15	3.3	15	82	8	53	42	29	0	27	1.56
43844951--43845066	41	2.8	41	90	2	180	27	31	20	19	1.97
43853417--43853450	17	1.9	18	88	5	52	23	2	0	73	0.97
43856053--43856110	22	2.5	23	86	5	73	39	24	20	15	1.91
43856145--43856250	41	2.5	44	75	13	116	16	14	28	40	1.88
43856285--43856409	41	3.0	40	70	15	110	22	15	25	36	1.93
43857305--43857369	22	3.0	20	76	12	67	18	0	44	36	1.50
43857304--43857368	15	4.5	14	80	5	58	18	0	44	36	1.50
43857302--43857369	7	9.4	7	78	12	66	17	0	45	36	1.49
43858659--43858702	22	2.0	22	86	8	63	0	29	0	70	0.88
43860634--43860663	15	2.1	14	93	6	51	63	0	0	36	0.95
43864473--43864528	14	3.9	14	79	9	67	78	3	17	0	0.89
43864473--43864528	22	2.5	22	91	0	85	78	3	17	0	0.89
43864474--43864538	8	8.4	8	84	6	80	75	3	21	0	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43870591--43870690	23	4.3	22	75	16	69	53	3	2	42	1.28
43870787--43870833	25	1.9	25	86	4	69	42	4	0	53	1.20
43870971--43871039	14	5.1	14	71	23	58	37	1	0	60	1.06
43870972--43871039	20	3.3	20	78	13	68	38	1	0	60	1.06
43872347--43872379	7	4.7	7	96	0	57	12	33	30	24	1.91
43889152--43889246	50	1.9	49	89	2	145	28	25	17	28	1.98
43903907--43903942	2	18.0	2	88	0	54	0	5	50	44	1.25
43903907--43903942	16	2.2	16	100	0	72	0	5	50	44	1.25
43908384--43908486	43	2.4	41	87	9	143	47	12	5	33	1.65
43912716--43912821	53	2.0	53	88	3	160	42	15	8	33	1.77
43917423--43917539	62	1.9	61	84	5	157	47	4	4	43	1.42
43921379--43921470	18	4.9	18	73	13	62	61	5	3	29	1.34
43922014--43922081	31	2.2	31	81	5	84	23	14	19	42	1.88
43922937--43922971	17	2.0	18	88	5	54	57	2	0	40	1.14
43925020--43925098	21	3.9	21	88	3	108	15	25	16	43	1.87
43925016--43925098	42	2.0	40	88	4	121	16	25	15	42	1.88
43927563--43927618	29	1.9	29	85	7	78	8	21	10	58	1.58
43927640--43927719	3	27.7	3	70	20	55	32	5	0	62	1.17
43927642--43927719	18	4.5	16	77	19	68	32	5	0	62	1.17
43931200--43931240	18	2.2	20	86	8	59	17	2	12	68	1.31
43931199--43931243	17	2.4	19	82	13	58	17	2	13	66	1.34
43931200--43931249	20	2.6	19	81	12	50	18	4	12	66	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43932445--43932503	22	2.7	21	72	15	57	32	1	5	61	1.28
43934019--43934069	21	2.4	21	86	0	75	27	7	33	31	1.85
43939444--43939483	20	2.1	20	86	9	57	32	12	2	52	1.52
43948989--43949249	132	2.0	132	86	1	371	38	22	10	28	1.87
43953458--43953497	19	2.1	19	86	9	55	0	32	2	65	1.06
43953454--43953502	21	2.3	21	83	16	66	0	34	2	63	1.06
43958704--43958862	62	2.6	62	78	4	176	23	28	23	25	2.00
43975601--43975648	25	2.0	24	84	12	62	41	22	20	14	1.89
43975597--43975678	24	3.3	24	77	6	67	43	18	19	18	1.88
43976526--43976572	25	1.9	24	86	4	67	38	23	21	17	1.93
43976556--43976606	24	2.1	24	92	0	84	41	21	23	13	1.89
43976569--43976614	24	1.9	24	90	0	74	43	19	26	10	1.84
43976650--43976697	25	1.9	25	91	0	78	35	22	25	16	1.95
43984182--43984223	22	1.9	22	90	0	66	33	0	33	33	1.58
43984195--43984253	30	2.0	30	89	0	91	33	0	33	32	1.58
43984173--43984275	52	2.0	51	83	9	129	34	0	32	33	1.58
43984225--43984292	22	3.1	21	83	8	82	39	0	27	32	1.57
43989592--43989639	23	2.0	25	88	12	73	33	2	0	64	1.05
43989593--43989644	24	2.2	22	83	16	61	34	1	0	63	1.06
43995600--43995652	23	2.3	23	83	0	79	22	18	24	33	1.97
43995782--43995854	38	1.9	38	89	8	114	46	1	20	31	1.59
43996872--43996898	8	3.4	8	100	0	54	37	11	0	51	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44014635--44014677	21	2.0	21	86	9	59	30	9	20	39	1.84
44018599--44018638	20	2.0	20	85	9	55	35	10	12	42	1.76
44029841--44029868	12	2.3	12	100	0	56	42	28	21	7	1.79
44035828--44036006	51	3.5	51	93	0	297	28	24	15	31	1.95
44040301--44040489	59	3.2	57	67	19	143	41	3	4	50	1.39
44040290--44040587	120	2.5	120	94	1	517	42	2	5	49	1.38
44040363--44040550	61	3.1	61	68	14	190	42	2	6	48	1.41
44040424--44040469	16	2.9	16	78	12	51	45	0	2	52	1.13
44040364--44040547	57	3.1	59	66	25	159	41	2	7	48	1.42
44040544--44040585	15	2.7	16	82	14	52	45	0	2	52	1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185