genome.fa.s5.2.7.7.80.10.50.1000.181.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  181  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55068605--55068787	96	1.9	92	82	14	228	28	12	15	43	1.83
55078946--55079003	22	2.6	22	84	7	73	43	17	3	36	1.66
55078982--55079037	21	2.8	19	78	19	69	37	17	7	37	1.78
55078993--55079036	21	2.1	21	91	8	72	38	15	6	38	1.75
55087598--55087628	4	7.8	4	100	0	62	48	0	25	25	1.52
55089519--55089547	11	2.6	11	100	0	58	62	17	10	10	1.54
55092525--55092587	24	2.9	21	73	21	58	30	3	0	66	1.07
55094394--55094532	46	3.0	45	89	2	206	29	27	10	33	1.89
55095355--55095415	30	2.0	30	96	0	113	29	9	14	45	1.77
55097940--55097993	4	13.5	4	84	0	63	27	1	24	46	1.63
55097945--55097999	28	1.9	29	92	3	94	29	3	21	45	1.69
55097075--55098919	924	2.0	921	99	0	3618	37	17	15	29	1.91
55098864--55098917	4	13.5	4	84	0	63	27	1	24	46	1.63
55098869--55098927	28	2.1	28	83	0	73	28	3	25	42	1.71
55098231--55099860	813	2.0	814	99	0	3217	36	17	17	28	1.93
55099677--55099730	4	13.5	4	84	0	63	27	1	24	46	1.63
55099682--55099740	28	2.1	28	83	0	73	28	3	25	42	1.71
55100409--55100462	4	13.5	4	84	0	63	27	1	24	46	1.63
55100414--55100472	28	2.1	28	83	0	73	28	3	25	42	1.71
55099259--55100725	732	2.0	732	100	0	2934	37	15	19	27	1.92
55110609--55110669	31	1.9	32	90	3	97	36	6	11	45	1.66
55113422--55113448	13	2.1	13	100	0	54	55	7	0	37	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55113533--55113768	97	2.4	97	100	0	472	40	13	8	37	1.75
55113806--55113850	23	2.0	23	82	8	56	44	6	2	46	1.42
55115840--55115884	23	2.0	23	82	8	56	44	6	2	46	1.42
55119553--55119586	17	2.0	17	94	0	59	44	5	0	50	1.26
55119553--55119591	17	2.4	16	87	8	53	43	5	0	51	1.24
55119557--55119596	17	2.3	18	83	12	57	47	5	0	47	1.24
55119552--55119840	120	2.4	120	91	1	465	41	2	4	50	1.36
55119625--55119808	59	3.1	59	68	22	166	41	1	6	50	1.38
55119805--55119846	15	2.7	16	82	14	52	45	0	2	52	1.13
55119796--55119837	15	2.9	15	82	10	52	47	0	0	52	1.00
55119949--55119983	18	2.0	17	88	5	52	45	0	0	54	0.99
55119780--55120096	157	2.0	157	96	0	589	47	5	3	44	1.41
55120219--55120254	16	2.2	16	95	0	63	36	36	0	27	1.57
55122712--55122788	25	3.2	25	76	5	79	19	23	18	38	1.93
55122712--55122821	47	2.3	49	72	21	108	19	21	18	40	1.91
55129923--55129970	6	8.0	6	100	0	96	33	50	0	16	1.46
55133921--55133994	21	3.5	22	85	10	100	35	27	22	14	1.94
55133920--55134007	21	4.0	23	82	10	96	34	25	22	18	1.96
55133921--55134007	44	2.0	41	82	6	102	34	25	22	17	1.96
55135170--55135195	3	8.7	3	100	0	52	65	0	0	34	0.93
55135322--55135373	17	3.2	17	84	10	74	57	1	0	40	1.10
55135323--55135363	14	2.9	14	92	0	73	56	2	0	41	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55137515--55137696	51	3.6	51	93	0	310	29	22	14	34	1.93
55137860--55138657	399	2.0	398	98	0	1544	35	22	10	31	1.88
55138966--55139256	145	2.0	145	100	0	582	29	21	11	37	1.89
55149068--55149102	18	1.9	18	94	0	61	28	5	0	65	1.15
55149049--55149095	24	1.9	25	91	4	78	27	4	0	68	1.08
55152960--55153014	24	2.3	23	79	11	58	69	20	3	7	1.28
55164235--55164877	320	2.0	320	99	0	1277	34	16	16	32	1.92
55174718--55174745	13	2.2	13	100	0	56	17	0	0	82	0.68
55177335--55177446	56	2.0	56	91	0	179	22	21	16	40	1.91
55191562--55191586	6	4.2	6	100	0	50	32	0	0	68	0.90
55199000--55199024	7	3.6	7	100	0	50	28	0	0	72	0.86
55201404--55201461	30	1.9	30	86	6	82	46	1	6	44	1.40
55214902--55214946	21	2.2	20	88	4	63	11	6	8	73	1.25
55214902--55214946	10	4.4	10	80	5	54	11	6	8	73	1.25
55230282--55230325	22	2.0	22	86	8	63	31	6	2	59	1.36
55231820--55231847	12	2.3	12	100	0	56	25	32	28	14	1.94
55233514--55233543	12	2.4	12	94	5	51	0	23	3	73	0.98
55233513--55233587	22	3.3	21	71	12	60	0	18	8	73	1.07
55236467--55236601	39	3.5	36	72	13	92	22	20	27	29	1.98
55241832--55242452	320	1.9	320	99	0	1233	31	16	17	34	1.92
55244674--55244701	3	9.3	3	100	0	56	0	32	0	67	0.91
55253496--55253627	66	2.0	66	98	0	255	42	13	12	31	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55261373--55261510	69	2.0	69	98	0	267	32	21	28	17	1.96
55272513--55272548	19	1.9	19	88	5	56	50	22	8	19	1.74
55273850--55273886	16	2.2	17	86	13	51	2	10	2	83	0.84
55275177--55275252	2	38.0	2	100	0	152	50	0	50	0	1.00
55283765--55283810	24	2.0	24	82	4	58	36	0	21	41	1.54
55284873--55284911	16	2.4	16	91	0	60	35	0	0	64	0.94
55292444--55292526	43	1.9	43	100	0	166	44	22	4	27	1.73
55300983--55301153	58	3.1	57	82	12	230	32	15	25	26	1.96
55301034--55301152	50	2.4	50	92	1	202	31	14	26	26	1.95
55302500--55302545	18	2.5	19	82	10	60	43	2	0	54	1.12
55306452--55306534	43	1.9	43	87	0	121	51	13	6	28	1.64
55313836--55313875	20	2.0	20	90	0	62	50	7	10	32	1.64
55316888--55317299	125	3.3	124	89	2	612	33	16	19	30	1.94
55320323--55320444	48	2.5	48	95	1	217	42	9	2	45	1.48
55320558--55320618	21	2.9	21	83	9	63	8	19	42	29	1.80
55322483--55322543	22	2.8	22	85	9	81	44	1	31	22	1.63
55322481--55322543	33	1.9	33	87	12	94	44	1	30	23	1.63
55322483--55322544	11	5.6	11	75	17	58	45	1	30	22	1.62
55329537--55329620	30	2.7	31	75	12	100	45	10	3	40	1.56
55331080--55331122	21	2.0	23	86	9	63	44	0	0	55	0.99
55331134--55331170	16	2.3	17	81	13	51	54	0	5	40	1.24
55345044--55345092	23	2.1	24	81	7	57	44	2	8	44	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55346696--55346743	23	2.0	23	84	4	60	56	14	0	29	1.39
55350436--55350465	12	2.5	12	94	0	51	40	13	26	20	1.89
55351476--55351519	22	2.0	23	86	8	65	54	4	2	38	1.33
55353222--55353250	14	2.0	15	93	6	51	75	0	3	20	0.94
55359412--55359455	21	2.2	21	92	8	74	31	0	0	68	0.90
55359520--55359581	21	3.0	21	70	13	56	50	1	3	45	1.27
55363080--55363133	29	1.9	28	85	7	74	24	14	7	53	1.66
55363142--55363205	29	2.2	29	100	0	128	46	12	7	32	1.70
55384316--55384493	89	2.0	89	91	0	284	36	8	14	41	1.76
55388186--55388226	16	2.6	16	84	7	57	65	0	0	34	0.93
55391373--55391454	31	2.6	31	84	0	101	35	7	7	50	1.58
55391391--55391474	31	2.8	31	85	7	102	35	3	5	54	1.42
55392437--55392469	16	2.0	17	88	5	50	39	3	0	57	1.14
55395872--55395938	34	1.9	35	87	3	100	31	8	14	44	1.76
55404457--55404490	3	11.3	3	87	0	50	38	35	26	0	1.57
55405350--55405391	21	2.0	21	100	0	84	28	19	4	47	1.69
55420055--55420095	20	2.0	20	100	0	82	43	21	19	14	1.87
55420167--55420953	390	2.0	390	98	0	1511	33	17	18	31	1.94
55422051--55422174	30	4.1	30	89	1	185	25	24	8	42	1.81
55422061--55422168	15	7.2	15	65	19	64	25	22	9	43	1.82
55426753--55426836	30	2.8	30	90	0	132	25	22	8	44	1.80
55426753--55426830	15	5.2	15	64	11	52	25	21	8	43	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55427594--55427641	16	3.0	16	87	0	69	25	0	2	72	0.95
55430857--55430889	17	1.9	17	93	0	57	54	0	3	42	1.15
55430869--55430996	38	3.3	39	93	3	204	37	1	6	54	1.35
55432241--55432329	45	2.0	45	97	0	169	22	20	22	34	1.96
55434772--55434854	40	2.0	40	88	6	123	38	1	7	53	1.37
55435244--55435287	21	2.1	21	100	0	88	40	22	0	36	1.54
55435291--55435320	15	2.1	14	93	6	51	6	6	0	86	0.70
55435290--55435334	23	2.0	23	90	0	72	8	8	0	82	0.85
55438650--55438680	16	1.9	16	93	0	53	29	0	22	48	1.51
55440510--55440577	33	2.1	33	100	0	136	23	11	17	47	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185