genome.fa.s5.2.7.7.80.10.50.1000.57.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  57  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17821616--17821687	29	2.4	30	83	4	83	13	36	26	23	1.93
17821827--17821876	24	2.1	24	92	0	82	20	20	34	26	1.96
17829995--17830035	21	2.0	21	81	18	50	21	26	19	31	1.97
17841208--17841241	3	11.3	3	100	0	68	32	0	0	67	0.91
17841336--17841404	24	2.9	23	79	14	61	37	7	5	49	1.55
17846613--17846645	7	4.9	7	88	7	50	66	0	15	18	1.25
17846613--17846645	13	2.5	13	95	5	57	66	0	15	18	1.25
17847924--17848503	44	12.6	45	66	18	189	32	18	21	28	1.97
17847924--17848475	142	3.9	142	94	0	946	32	18	21	27	1.96
17848526--17848632	50	2.1	50	83	6	128	30	23	18	27	1.98
17850137--17850247	24	4.8	23	70	8	73	35	5	6	53	1.49
17852443--17852631	42	4.5	42	84	4	213	27	15	25	30	1.96
17864195--17864237	21	2.0	21	86	0	59	41	0	16	41	1.48
17864602--17864649	25	2.0	25	87	4	71	14	22	20	41	1.89
17864830--17864886	25	2.3	25	78	6	62	22	24	21	31	1.98
17873378--17873507	21	6.0	22	87	7	178	39	23	20	16	1.92
17873378--17873507	44	3.0	45	86	7	189	39	23	20	16	1.92
17874360--17874400	22	1.9	22	85	5	57	9	19	7	63	1.48
17874400--17874435	17	2.1	18	89	5	56	5	13	5	75	1.17
17878848--17878893	22	2.0	24	91	8	78	17	8	0	73	1.07
17879833--17879874	17	2.6	16	85	7	57	78	0	16	4	0.91
17879847--17879904	15	3.6	15	75	13	53	82	1	6	8	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17879994--17880061	17	3.9	17	73	21	61	75	0	14	10	1.06
17885730--17885773	22	2.0	22	91	8	72	50	15	13	20	1.78
17897246--17897339	9	10.4	9	83	4	127	41	22	10	25	1.86
17901518--17901576	22	2.7	22	82	7	59	20	20	13	45	1.84
17902566--17902605	16	2.3	18	87	8	57	27	0	7	65	1.20
17905783--17906285	168	3.0	167	85	3	695	23	20	17	38	1.92
17913127--17913222	28	3.3	28	80	11	88	57	1	1	40	1.13
17914130--17914174	16	2.7	17	82	6	56	40	0	0	60	0.97
17914158--17914285	11	11.4	11	77	17	113	42	2	0	55	1.12
17914169--17914226	29	2.0	29	83	6	73	36	3	0	60	1.14
17914141--17914275	39	3.4	39	83	3	182	41	1	0	57	1.08
17914198--17914300	22	5.0	21	75	17	83	45	1	0	52	1.12
17914268--17914307	21	1.9	21	89	0	62	37	2	0	60	1.11
17914267--17914325	22	2.8	21	80	14	59	40	1	3	54	1.27
17920129--17920226	40	2.4	42	77	6	103	43	21	16	18	1.87
17920546--17920624	41	1.9	41	86	0	113	22	21	25	30	1.99
17922842--17922872	16	1.9	16	93	0	53	35	25	6	32	1.82
17925270--17925464	87	2.2	87	88	3	277	40	18	29	11	1.86
17925420--17925489	21	3.3	21	86	4	97	34	17	41	7	1.76
17925808--17925963	43	3.6	43	83	3	190	28	21	26	23	1.99
17927261--17927317	25	2.4	24	80	13	64	45	1	3	49	1.29
17929395--17929504	51	2.2	51	83	6	134	42	10	11	35	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17935321--17935432	42	2.7	42	84	4	154	17	18	15	48	1.82
17936326--17936393	34	2.0	34	91	5	111	69	2	25	2	1.17
17936341--17936393	17	3.1	17	71	10	54	66	1	28	3	1.20
17943037--17943075	17	2.2	18	90	4	62	41	0	2	56	1.13
17946223--17946635	103	4.0	103	98	0	790	42	13	13	31	1.82
17947516--17947554	19	2.0	19	85	5	51	17	15	46	20	1.84
17948709--17948738	15	2.0	15	100	0	60	33	13	20	33	1.91
17949983--17950073	28	3.4	27	95	4	166	39	10	0	49	1.38
17950130--17950208	27	2.9	27	90	0	113	30	22	30	16	1.96
17950252--17950385	4	34.0	4	71	20	72	68	0	31	0	0.90
17950257--17950446	36	5.2	37	75	21	161	68	0	31	0	0.90
17950333--17950424	3	32.3	3	70	16	54	69	0	30	0	0.89
17950283--17950451	78	2.2	80	89	7	258	69	0	30	0	0.88
17950256--17950392	10	14.5	10	72	23	61	67	0	32	0	0.91
17950253--17950433	39	4.5	41	73	20	132	67	0	32	0	0.90
17950261--17950450	47	4.2	45	72	12	115	68	0	31	0	0.89
17953942--17953968	11	2.5	11	100	0	54	37	7	14	40	1.74
17960812--17960853	19	2.2	20	82	4	50	30	7	11	50	1.66
17961378--17961427	25	2.0	25	100	0	100	20	16	24	40	1.91
17964230--17964292	24	2.6	24	82	9	67	33	6	7	52	1.56
17970868--17970971	31	3.4	31	70	17	92	19	25	11	44	1.84
17979610--17979667	29	2.0	29	90	3	100	25	6	62	3	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17980317--17980368	15	3.5	15	70	19	54	48	26	11	13	1.77
17980310--17980369	30	2.0	30	100	0	120	46	23	16	13	1.82
17980370--17980394	1	25.0	1	100	0	50	0	0	0	100	0.00
17983796--17983842	10	4.6	10	80	15	51	0	34	4	61	1.15
17984057--17984099	2	22.0	2	90	4	61	44	0	55	0	0.99
17984461--17984504	21	2.1	21	82	0	52	38	2	2	56	1.24
18000068--18000143	34	2.2	34	97	0	143	30	2	26	40	1.69
18000858--18001007	41	3.7	41	88	0	210	38	27	18	16	1.92
18005393--18005590	27	7.4	26	85	6	245	43	20	16	19	1.88
18005392--18005590	80	2.5	81	87	2	276	43	20	16	19	1.88
18006885--18006919	18	1.9	18	88	0	52	8	11	8	71	1.31
18009349--18009373	13	1.9	13	100	0	50	16	24	24	36	1.94
18012896--18012928	17	2.0	17	88	5	50	66	6	15	12	1.42
18015964--18016046	41	2.0	41	100	0	166	30	16	14	38	1.89
18021226--18021271	19	2.4	18	85	10	56	26	2	0	71	0.97
18021226--18021271	24	1.9	24	82	8	58	26	2	0	71	0.97
18033173--18033211	12	3.2	12	85	0	51	17	20	5	56	1.60
18033473--18033588	49	2.3	50	82	5	137	21	28	21	28	1.99
18033473--18033604	49	2.7	49	80	7	124	21	28	21	28	1.99
18034987--18035016	16	1.9	15	93	6	51	33	0	10	56	1.32
18035105--18035172	31	2.2	32	89	2	102	30	4	25	39	1.75
18044776--18044808	17	1.9	17	93	0	57	15	12	15	57	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18050809--18050867	17	3.5	17	73	0	55	50	10	6	32	1.62
18051835--18051925	32	2.8	33	83	8	116	46	15	4	34	1.66
18051874--18051948	32	2.4	31	80	10	89	45	16	6	32	1.73
18051878--18051958	33	2.5	32	87	2	108	45	14	4	34	1.67
18062122--18062151	12	2.5	12	94	0	51	23	40	30	6	1.80
18067431--18067575	67	2.2	67	100	0	290	40	22	12	25	1.89
18068464--18068490	13	2.1	13	100	0	54	29	7	29	33	1.85
18069755--18069790	13	2.7	13	91	4	54	16	50	2	30	1.60
18071289--18071333	11	4.2	11	82	5	56	22	6	8	62	1.48
18074719--18075381	334	2.0	334	99	0	1308	30	16	23	29	1.96
18077751--18078686	132	7.1	132	82	2	947	33	15	15	36	1.89
18077952--18078163	65	3.2	65	68	12	189	32	15	15	36	1.89
18078017--18078224	67	3.1	66	67	18	178	29	14	18	37	1.91
18077751--18078686	264	3.6	262	82	3	1060	33	15	15	36	1.89
18077753--18078686	396	2.4	393	82	4	1128	33	15	14	36	1.89
18081724--18081755	16	2.0	16	93	0	55	25	15	0	59	1.36
18081985--18082173	51	3.7	51	79	8	233	30	26	16	25	1.97
18081977--18082199	101	2.2	102	79	5	247	30	27	16	26	1.97
18087405--18087458	26	2.1	25	83	10	65	31	18	7	42	1.78
18088788--18088893	30	3.3	30	70	19	88	28	26	17	27	1.98
18094962--18095147	62	3.0	62	98	0	354	35	13	6	43	1.72
18096292--18096511	55	3.9	55	84	3	271	50	15	6	27	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18097595--18097683	25	3.1	30	82	15	125	25	25	6	41	1.80
18097605--18097651	15	3.1	15	70	11	51	27	23	8	40	1.83
18099791--18099857	33	2.0	33	97	0	125	37	25	16	20	1.93
18102295--18102383	25	3.1	30	82	15	125	25	25	6	41	1.80
18102305--18102351	15	3.1	15	70	11	51	27	23	8	40	1.83
18103478--18103525	22	2.2	22	84	0	60	10	50	18	20	1.76
18104357--18104416	3	20.0	3	82	0	75	28	3	0	68	1.05
18109303--18109349	13	3.5	13	80	13	51	63	2	17	17	1.40
18109299--18109341	7	6.1	7	81	10	52	65	2	16	16	1.38
18110615--18111891	44	29.0	44	87	0	1748	31	13	24	30	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185