genome.fa.s5.2.7.7.80.10.50.1000.45.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  45  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13399123--13399168	20	2.3	20	79	17	60	13	23	6	56	1.60
13402098--13402204	25	4.3	24	79	10	108	26	20	21	31	1.98
13402098--13402225	50	2.5	50	81	9	136	28	20	21	29	1.98
13402142--13402220	25	3.1	25	87	3	104	29	22	17	30	1.97
13411806--13411854	24	2.0	24	100	0	98	30	8	16	44	1.76
13418928--13419117	41	4.6	41	86	5	242	36	15	26	21	1.93
13419034--13419094	20	3.0	20	65	21	54	36	16	29	18	1.92
13418935--13419117	82	2.2	82	88	3	271	35	15	27	21	1.94
13419014--13419080	21	3.2	21	66	19	59	32	16	31	19	1.94
13435425--13435462	19	1.9	20	89	10	60	39	5	7	47	1.55
13452191--13452405	60	3.6	60	100	0	430	32	12	20	34	1.90
13460059--13460113	22	2.4	22	82	14	67	30	0	18	50	1.47
13461150--13461195	24	1.9	24	81	0	56	39	6	23	30	1.80
13467759--13467785	14	1.9	14	100	0	54	18	7	7	66	1.40
13472194--13472233	19	2.1	19	85	0	53	60	5	5	30	1.40
13472409--13473102	347	2.0	347	100	0	1388	31	13	17	36	1.89
13476535--13476573	14	2.8	14	88	0	60	43	2	23	30	1.67
13478566--13478620	27	2.0	27	92	0	92	25	7	14	52	1.67
13483591--13483655	16	4.1	16	89	0	103	40	4	33	21	1.74
13483906--13484224	102	3.2	100	91	4	507	50	5	1	42	1.36
13484057--13484101	22	2.0	23	86	4	65	57	2	0	40	1.11
13484074--13484120	12	3.8	12	78	10	58	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13484110--13484415	117	2.6	117	99	0	603	50	5	1	41	1.36
13484186--13484354	41	4.3	40	67	20	122	53	3	1	41	1.29
13483906--13484415	204	2.4	201	84	11	527	50	5	1	42	1.36
13484390--13484430	21	2.0	21	100	0	82	56	9	0	34	1.32
13488372--13488441	35	2.0	35	94	0	122	22	31	5	40	1.78
13490891--13491463	287	2.0	287	92	1	952	38	10	16	34	1.83
13492080--13492324	40	6.2	40	78	0	258	21	25	17	35	1.95
13492769--13492835	16	4.2	16	83	7	82	44	4	29	20	1.71
13493047--13493088	15	2.7	16	82	14	52	52	2	0	45	1.13
13493056--13493097	15	2.9	15	82	10	52	52	0	0	47	1.00
13493045--13493341	120	2.5	119	94	1	513	49	5	2	43	1.37
13493162--13493208	16	3.0	16	78	12	53	51	2	0	46	1.13
13493300--13493340	16	2.6	16	82	17	50	53	0	2	43	1.13
13495961--13496028	33	2.1	33	94	0	118	45	13	30	10	1.76
13503061--13503097	18	2.1	18	94	0	65	21	27	13	37	1.91
13503660--13503710	23	2.2	23	85	0	66	41	17	9	31	1.82
13509377--13509431	29	2.0	27	82	13	67	60	10	14	14	1.60
13517682--13517927	120	2.0	121	87	3	354	23	26	14	35	1.94
13517683--13517927	40	6.1	40	82	2	269	24	26	14	35	1.94
13527916--13527993	33	2.4	33	82	4	104	42	32	8	16	1.79
13535392--13535769	190	2.0	190	86	0	531	25	11	26	37	1.90
13541217--13541405	51	3.7	50	86	5	231	25	13	25	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13541737--13541794	29	2.0	27	84	15	73	17	6	18	56	1.62
13548453--13548511	23	2.6	22	86	13	84	16	8	22	52	1.70
13549321--13549384	31	2.1	31	90	0	101	32	17	1	48	1.56
13549427--13549515	37	2.4	37	96	0	169	44	13	6	34	1.70
13549585--13549648	33	1.9	33	100	0	128	42	15	6	35	1.72
13551232--13551258	11	2.5	11	100	0	54	22	7	18	51	1.70
13552914--13553175	39	6.7	40	86	7	310	24	26	22	26	2.00
13560943--13561206	40	6.7	40	89	5	360	25	27	21	25	1.99
13564945--13565165	114	1.9	114	91	0	361	34	19	23	23	1.96
13565700--13565750	16	2.8	18	80	20	61	49	0	3	47	1.20
13565733--13565767	18	2.0	17	88	5	52	45	0	0	54	0.99
13565793--13565979	61	3.1	61	68	17	190	41	2	7	49	1.43
13565857--13565908	15	3.6	15	80	12	56	44	0	1	53	1.11
13565986--13566027	15	2.7	16	82	14	52	45	0	2	52	1.13
13565977--13566018	15	2.9	15	82	10	52	47	0	0	52	1.00
13565703--13566024	120	2.7	120	97	0	601	43	1	5	49	1.37
13566227--13566264	16	2.4	16	86	0	58	28	34	2	34	1.71
13566900--13566939	13	3.1	13	100	0	80	40	15	7	37	1.75
13566889--13566939	26	2.0	26	84	7	68	43	13	5	37	1.69
13570202--13570249	18	2.7	18	86	0	69	37	12	8	41	1.73
13571360--13571407	25	1.9	25	100	0	96	41	27	10	20	1.85
13576248--13576431	43	4.3	43	84	6	212	21	28	21	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13576361--13576459	44	2.2	44	94	0	171	16	25	23	35	1.95
13576369--13576471	44	2.4	44	87	8	156	20	25	19	34	1.96
13576780--13576829	21	2.4	21	93	0	82	0	46	18	36	1.49
13577530--13577556	14	1.9	14	100	0	54	14	29	11	44	1.80
13579398--13579491	38	2.5	38	83	0	134	37	39	1	22	1.61
13579577--13579636	29	2.1	28	87	3	84	51	5	5	38	1.45
13580142--13580171	4	7.5	4	100	0	60	23	0	0	76	0.78
13580286--13580334	17	2.9	16	79	8	53	32	42	0	24	1.55
13580300--13580395	38	2.5	37	81	8	113	33	39	4	22	1.74
13580916--13581018	41	2.5	41	87	6	147	32	26	21	20	1.98
13581067--13581188	40	3.1	39	77	9	122	24	18	20	36	1.94
13582392--13582437	22	2.1	22	88	8	67	43	13	2	41	1.55
13590968--13590994	14	1.9	14	100	0	54	44	0	14	40	1.46
13591511--13591562	16	3.4	15	74	10	52	48	0	0	51	1.00
13591521--13591568	16	3.0	16	75	6	53	52	0	0	47	1.00
13591543--13591618	31	2.3	32	77	16	77	50	0	1	48	1.09
13591645--13591686	21	2.0	21	95	0	75	50	9	0	40	1.35
13596927--13596990	31	2.1	31	100	0	128	39	26	0	34	1.57
13597693--13597735	21	2.0	21	81	9	50	60	9	4	25	1.47
13601480--13601565	42	2.0	43	91	6	140	33	9	33	23	1.87
13607854--13607890	18	2.1	18	100	0	74	51	10	10	27	1.70
13608126--13608176	25	2.0	25	96	0	93	41	5	7	45	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13608658--13608719	26	2.5	26	84	7	85	38	6	17	37	1.76
13609046--13609076	16	1.9	16	93	0	53	29	0	6	64	1.18
13609361--13609405	7	6.7	7	87	7	67	73	2	0	24	0.95
13613115--13613206	48	1.9	48	86	0	130	32	4	39	23	1.75
13617899--13617945	12	3.2	16	69	25	50	61	4	2	31	1.27
13623998--13624058	11	5.6	11	74	21	58	59	1	3	36	1.24
13623977--13624063	31	2.7	31	91	7	131	60	1	3	34	1.21
13624741--13624772	9	3.7	9	95	4	57	34	9	0	56	1.32
13627876--13627901	9	2.9	9	100	0	52	69	11	0	19	1.18
13627851--13627892	21	1.9	23	85	9	61	64	16	0	19	1.30
13635255--13635291	19	1.9	19	89	10	58	32	0	21	45	1.52
13637680--13637726	3	16.0	3	91	4	78	34	31	0	34	1.58
13647506--13647728	79	2.8	78	82	9	265	24	27	22	25	2.00
13647506--13647728	39	5.7	40	86	8	266	24	27	22	25	2.00
13655520--13655704	79	2.3	82	84	7	238	25	27	22	24	2.00
13655501--13655704	40	5.1	40	82	8	238	25	27	22	25	2.00
13660296--13660383	43	2.0	43	97	0	167	31	17	14	36	1.90
13663686--13663725	18	2.2	18	86	0	53	75	5	7	12	1.18
13664199--13664223	11	2.3	11	100	0	50	24	8	0	68	1.16
13664197--13664245	9	5.2	9	77	18	55	28	12	0	59	1.34
13679526--13679715	100	1.8	105	82	7	246	24	27	20	26	1.99
13679474--13679721	50	4.9	50	78	7	198	25	26	19	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13681290--13681344	19	3.1	17	82	10	65	41	9	14	34	1.77
13685570--13685703	64	2.1	64	81	10	152	47	13	10	28	1.75
13685764--13685818	19	3.1	17	82	10	65	41	9	14	34	1.77
13708021--13708173	76	2.0	76	98	0	297	49	15	9	26	1.74
13726376--13726438	25	2.5	25	76	0	72	26	19	15	38	1.92
13737467--13737502	18	2.1	16	90	10	54	61	0	5	33	1.19
13739310--13739440	43	3.0	44	65	8	106	25	22	19	32	1.98
13739298--13739456	87	1.8	87	87	2	239	23	22	20	33	1.97
13739478--13739910	44	9.8	44	91	1	679	22	28	21	27	1.99
13739478--13739906	133	3.2	132	91	1	673	23	28	21	27	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185