genome.fa.s5.2.7.7.80.10.50.1000.50.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  50  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15134513--15134560	24	2.0	25	87	4	71	75	4	0	20	0.97
15136815--15136924	28	3.9	28	84	7	125	29	31	10	28	1.91
15153386--15153536	27	5.6	27	81	3	142	27	28	15	28	1.96
15153386--15153535	55	2.8	54	80	4	149	28	28	15	28	1.96
15161143--15161293	27	5.6	27	84	3	160	28	28	15	27	1.96
15161143--15161293	55	2.8	54	82	4	169	28	28	15	27	1.96
15162395--15162907	256	2.0	256	99	0	1008	36	27	7	28	1.85
15183462--15183495	17	2.0	17	100	0	68	41	35	5	17	1.74
15184525--15184558	14	2.4	14	90	0	50	58	11	0	29	1.33
15196868--15196908	22	1.9	21	85	5	55	19	43	19	17	1.88
15209557--15209590	12	2.8	12	95	4	59	32	2	0	64	1.08
15211049--15211129	24	3.6	24	69	24	68	17	34	0	48	1.48
15211653--15211699	24	1.9	26	87	12	73	42	2	8	46	1.46
15212942--15212987	20	2.3	20	85	7	58	50	6	0	43	1.28
15216449--15216694	45	5.5	45	84	1	185	21	25	15	37	1.92
15219114--15219150	6	6.2	6	93	0	65	48	32	0	18	1.49
15219451--15219514	9	7.1	9	81	0	65	25	31	0	43	1.55
15225573--15225612	20	2.0	20	90	0	62	75	2	5	17	1.10
15227464--15227753	51	5.7	49	79	12	300	25	16	26	31	1.97
15227473--15227753	102	2.8	102	95	2	498	25	16	25	32	1.96
15227464--15227752	153	1.9	151	81	10	356	25	16	26	31	1.97
15227758--15227850	45	2.1	45	93	0	159	25	19	23	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15227896--15227939	23	1.9	22	82	17	54	38	0	25	36	1.56
15230265--15230311	15	3.1	15	79	14	60	27	2	2	68	1.13
15230343--15230404	26	2.3	27	83	2	81	24	4	11	59	1.51
15230554--15230613	27	2.4	25	80	8	59	36	6	0	56	1.26
15237471--15238226	51	15.6	51	75	12	657	28	16	24	30	1.97
15237471--15238218	97	7.8	96	80	6	762	28	16	24	30	1.97
15237997--15238077	40	2.0	40	85	2	108	24	14	28	32	1.95
15237471--15238226	386	2.0	387	85	2	1018	28	16	24	30	1.97
15238269--15238591	142	2.3	142	86	1	439	28	18	24	27	1.98
15238751--15238787	15	2.4	16	82	13	51	75	2	2	18	1.04
15238754--15238793	20	2.0	20	90	0	62	75	2	5	17	1.10
15240126--15240187	26	2.3	28	78	10	76	24	6	8	61	1.48
15240173--15240212	16	2.6	15	88	11	55	35	0	0	65	0.93
15243094--15243177	36	2.3	36	87	0	132	45	27	9	17	1.80
15253975--15254007	14	2.2	16	89	10	52	30	0	30	39	1.57
15258011--15258051	22	1.9	21	85	5	55	21	2	24	51	1.60
15260657--15260691	18	1.9	18	88	0	52	40	0	2	57	1.14
15273661--15273910	131	1.9	131	85	3	342	38	12	16	31	1.87
15276440--15276624	40	4.7	40	80	6	207	24	22	27	25	2.00
15276493--15276657	79	2.1	79	80	6	183	26	20	26	26	1.99
15279367--15279442	38	2.0	38	82	5	91	39	3	2	53	1.33
15279395--15279468	34	2.1	35	92	2	123	40	4	4	51	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15279455--15279502	21	2.2	21	85	3	60	31	2	4	62	1.26
15291766--15292494	132	5.6	132	91	2	1152	30	21	23	24	1.99
15292005--15292190	44	4.2	44	64	15	123	29	23	22	24	1.99
15293853--15293901	21	2.3	21	80	16	57	22	2	0	75	0.90
15293968--15294015	21	2.2	21	85	3	60	31	2	4	62	1.26
15294325--15294364	13	3.0	14	79	20	50	15	5	7	72	1.24
15294370--15294402	15	2.2	15	94	0	57	24	0	12	63	1.28
15298353--15298412	13	4.5	13	74	15	59	51	5	1	41	1.33
15298353--15298412	26	2.2	28	88	11	90	51	5	1	41	1.33
15300304--15300385	21	3.9	21	73	6	76	24	35	18	21	1.96
15300295--15300388	42	2.2	42	88	3	145	23	36	21	19	1.95
15303365--15304856	743	2.0	743	92	0	2450	25	16	25	32	1.96
15307663--15307812	37	4.1	37	92	0	246	26	32	19	21	1.97
15307931--15308352	49	8.8	49	93	2	671	27	27	9	34	1.89
15312124--15312154	12	2.6	12	100	0	62	19	12	19	48	1.81
15313744--15313826	25	3.3	25	77	0	94	34	21	16	26	1.95
15324848--15324960	55	2.1	55	96	0	208	30	15	12	41	1.83
15326674--15326719	23	2.0	23	82	4	56	50	2	2	45	1.26
15331537--15331611	39	1.9	39	97	0	141	26	9	17	46	1.78
15331545--15331624	39	2.1	38	84	6	101	32	6	17	43	1.74
15335227--15335278	27	1.9	27	84	0	68	32	34	13	19	1.90
15336696--15336891	39	5.0	39	80	0	194	42	20	6	30	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15336693--15336891	78	2.6	78	85	1	247	41	20	6	31	1.77
15338742--15338777	2	18.0	2	100	0	72	50	50	0	0	1.00
15342965--15343009	23	1.9	24	86	13	67	13	15	6	64	1.47
15347227--15347445	30	7.4	30	81	6	241	25	26	12	35	1.91
15352507--15352534	10	2.8	10	100	0	56	32	10	7	50	1.64
15352968--15353076	29	3.7	29	75	1	101	24	28	9	37	1.86
15362496--15362534	18	2.3	16	86	8	51	69	5	5	20	1.28
15362518--15362557	20	2.0	21	85	5	55	75	2	12	10	1.15
15368095--15368159	25	2.6	25	85	0	85	27	23	18	30	1.97
15375501--15375724	40	5.6	40	91	1	308	24	20	28	26	1.99
15375462--15375724	80	3.3	80	85	3	318	23	20	28	26	1.99
15375462--15375724	120	2.2	120	82	4	318	23	20	28	26	1.99
15383497--15383634	40	3.5	39	90	4	195	25	22	28	23	1.99
15383788--15383861	31	2.4	29	84	10	85	33	17	6	41	1.76
15383801--15383861	31	1.9	32	93	3	106	34	19	6	39	1.78
15385216--15385407	50	3.8	51	80	4	185	21	30	22	25	1.99
15385216--15385407	100	1.9	101	88	5	291	21	30	22	25	1.99
15386627--15386694	28	2.4	28	92	5	109	30	20	23	25	1.98
15387060--15387483	27	15.8	27	79	8	300	21	19	16	41	1.90
15387075--15387483	54	7.6	53	81	8	400	21	19	17	41	1.90
15387060--15387473	81	5.1	81	79	9	411	21	19	16	42	1.89
15390613--15390670	25	2.3	25	90	0	89	32	24	17	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15390624--15390681	25	2.3	25	90	0	89	34	24	17	24	1.96
15396614--15396678	32	2.0	32	87	0	94	18	21	16	43	1.88
15407882--15407920	6	6.5	6	93	0	69	53	0	28	17	1.44
15408070--15408124	25	2.2	26	90	3	85	38	9	20	32	1.84
15409671--15409730	30	2.0	29	93	3	102	38	8	18	35	1.81
15411233--15411310	25	3.2	25	77	1	77	28	23	17	30	1.97
15415658--15415713	24	2.3	24	90	0	94	39	16	21	23	1.92
15426040--15426098	29	2.0	29	93	0	100	30	16	10	42	1.82
15429362--15429425	18	3.6	17	71	20	51	17	4	0	78	0.92
15429370--15429433	27	2.4	25	77	10	65	18	6	0	75	1.01
15429694--15429753	21	2.8	21	82	10	68	10	6	25	58	1.55
15433201--15433232	13	2.5	13	94	0	55	34	0	15	50	1.45
15441791--15441878	38	2.3	38	92	2	140	45	19	7	27	1.78
15443834--15443863	15	2.0	15	93	0	51	56	6	6	30	1.51
15444931--15444979	25	1.9	26	87	4	73	40	6	32	20	1.77
15456622--15456674	17	3.1	17	86	0	79	22	22	3	50	1.64
15457747--15457778	11	2.9	11	100	0	64	46	25	0	28	1.53
15461258--15461307	17	2.9	17	87	0	82	24	24	6	46	1.75
15462762--15462806	19	2.3	21	77	14	51	22	42	0	35	1.54
15462779--15462837	30	1.9	31	86	3	84	22	40	1	35	1.64
15476003--15476057	27	2.0	28	92	3	94	36	10	30	21	1.88
15487763--15487828	33	2.0	33	85	5	89	27	22	25	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15488215--15488519	27	11.3	27	86	2	371	20	19	16	43	1.88
15491138--15491236	39	2.5	39	88	0	144	46	19	3	31	1.65
15495135--15495182	24	2.0	24	100	0	96	25	4	25	45	1.71
15497571--15497686	42	2.8	42	83	6	130	45	20	14	18	1.85
15513804--15514013	105	2.0	105	100	0	420	42	9	6	40	1.63
15514009--15514037	15	1.9	15	100	0	58	31	0	0	68	0.89
15523162--15523245	12	7.9	11	71	21	72	57	0	2	40	1.12
15523178--15523296	40	2.9	39	90	6	175	62	0	3	34	1.12
15528997--15529035	18	2.2	17	86	4	51	0	2	30	66	1.05
15529005--15529047	6	7.3	6	87	12	63	0	2	27	69	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185