genome.fa.s5.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  2  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
311718--311764	15	3.2	15	71	17	53	38	4	6	51	1.47
327219--327253	18	1.9	18	94	0	61	77	0	8	14	0.99
327431--327500	29	2.3	30	85	9	90	48	12	11	27	1.75
329080--329153	25	3.0	24	75	16	71	70	2	2	24	1.14
330904--330948	18	2.5	18	79	13	56	22	2	0	75	0.91
330933--331038	40	2.7	41	76	12	105	34	9	0	55	1.32
330986--331033	21	2.4	20	79	6	53	39	10	0	50	1.37
331072--331113	10	4.6	9	80	13	50	38	7	2	52	1.42
331406--331475	29	2.4	29	76	7	70	52	11	10	25	1.68
331535--331575	22	1.9	22	85	5	57	36	0	4	58	1.20
331551--331592	18	2.3	19	80	12	52	47	0	2	50	1.14
331617--331684	29	2.3	30	92	2	111	55	16	0	27	1.41
334744--334798	23	2.4	24	75	9	60	50	1	0	47	1.11
335735--335763	7	4.1	7	100	0	58	27	58	0	13	1.36
337964--338021	25	2.3	25	81	0	71	10	39	20	29	1.86
342375--342577	43	4.8	44	78	7	222	27	18	27	27	1.98
342362--342577	84	2.5	84	77	7	240	26	18	27	27	1.98
343682--343738	25	2.2	26	78	12	64	54	3	0	42	1.17
344942--345042	51	2.0	51	98	0	193	34	19	14	30	1.92
345136--345167	16	2.0	16	93	0	55	25	15	6	53	1.65
350701--350737	16	2.1	19	85	14	53	75	8	13	2	1.13
351085--351139	28	1.9	29	82	10	69	16	9	23	50	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
351513--352067	112	5.0	111	89	1	806	34	18	14	32	1.90
354477--354539	27	2.3	27	81	5	74	19	25	30	25	1.98
356401--356450	19	2.4	21	83	9	59	20	2	6	72	1.16
357853--357905	21	2.6	21	82	8	65	35	0	0	64	0.94
363569--363611	21	1.9	23	86	13	63	39	0	2	58	1.11
363861--363927	16	4.2	16	84	3	73	29	23	2	43	1.69
363861--363927	32	2.1	32	88	5	100	29	23	2	43	1.69
364127--364170	22	2.0	23	86	4	63	27	6	6	59	1.49
375058--375103	15	2.9	15	81	18	58	58	4	0	36	1.18
383085--383145	29	2.1	30	96	3	115	59	13	6	21	1.57
383486--383520	13	2.6	14	86	9	54	37	0	2	60	1.12
383783--383855	34	2.1	34	84	0	101	34	15	8	42	1.76
396991--397120	49	2.6	50	79	6	140	23	23	20	31	1.98
396991--397152	50	3.3	49	79	4	148	22	25	22	29	1.99
398298--398328	13	2.5	13	94	5	55	58	12	0	29	1.35
399819--399861	17	2.5	17	84	3	59	13	6	4	74	1.19
406834--406900	17	3.8	17	74	18	64	62	0	1	35	1.04
414035--414066	16	2.0	16	93	0	55	59	0	15	25	1.36
418090--418880	31	25.8	30	70	12	133	45	18	7	29	1.76
418137--418850	61	11.7	61	71	11	365	44	18	7	29	1.77
418185--418849	92	7.2	91	93	1	985	45	18	7	29	1.76
418854--418904	25	2.0	26	85	11	70	56	13	3	25	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
420452--420525	36	2.1	36	100	0	148	36	18	17	27	1.94
421810--421871	23	2.7	23	74	16	65	51	1	0	46	1.10
421832--421870	19	2.0	19	85	5	51	56	2	0	41	1.13
421862--421932	19	3.8	18	81	5	79	69	0	1	29	0.98
421863--421933	37	2.0	35	83	5	88	67	0	1	30	0.99
421881--421933	18	2.9	19	81	16	67	67	0	0	32	0.91
430262--430333	23	3.2	23	72	14	69	19	15	9	55	1.67
441743--441854	42	2.7	42	83	2	136	44	18	21	15	1.86
441743--441836	21	4.5	21	64	0	53	43	19	22	14	1.87
444383--444602	99	2.2	100	86	4	307	40	20	20	20	1.92
444389--444563	54	3.3	54	80	14	197	40	19	20	20	1.92
444509--444629	45	3.0	39	84	8	127	38	20	20	19	1.93
444394--444602	45	4.4	45	78	10	220	40	20	20	19	1.92
444547--444629	39	2.2	39	88	2	123	39	21	19	19	1.92
449941--449974	17	1.9	18	88	5	52	8	5	35	50	1.58
457032--457074	21	2.0	21	86	4	59	37	0	11	51	1.39
461117--461325	58	3.6	58	84	5	235	37	9	18	34	1.82
461341--461735	69	5.7	69	75	2	305	22	16	23	37	1.93
461368--461737	137	2.7	137	80	2	400	22	16	23	38	1.93
462365--462398	11	2.8	13	91	8	54	44	11	8	35	1.72
473653--473882	117	2.0	117	95	0	415	33	11	27	26	1.91
481950--481983	10	3.4	10	88	11	52	38	0	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
482422--482544	62	2.0	62	95	0	219	30	19	21	28	1.98
491128--491166	13	3.3	12	86	13	55	48	17	0	33	1.48
491811--491885	29	2.6	28	79	8	80	33	24	22	20	1.97
495136--495189	12	4.7	12	81	9	51	51	0	0	48	1.00
495181--495236	24	2.3	25	78	12	71	37	17	12	32	1.88
495482--495534	21	2.5	21	81	0	61	32	32	1	33	1.69
496228--496256	14	2.0	15	93	6	51	41	0	20	37	1.53
500667--500692	12	2.2	12	100	0	52	38	7	0	53	1.30
513855--513912	30	1.9	30	92	0	98	29	32	0	37	1.58
513884--513934	22	2.3	22	90	6	77	29	33	0	37	1.58
513964--514033	31	2.3	31	92	4	117	32	0	0	67	0.91
516354--516593	30	8.1	30	89	3	371	46	22	0	30	1.55
516354--516593	88	2.7	88	97	0	444	46	22	0	30	1.55
516840--516907	30	2.4	28	80	9	68	44	19	14	22	1.86
517257--517314	18	3.2	19	72	16	59	63	1	0	34	1.04
518214--518262	14	3.5	15	75	10	50	40	0	2	57	1.10
541765--541868	52	2.0	52	98	0	199	29	21	16	32	1.95
547831--547865	17	2.0	18	88	5	54	62	2	0	34	1.10
547831--547895	16	4.0	16	73	15	53	64	4	1	29	1.22
559505--559548	21	2.1	21	87	8	63	61	4	4	29	1.36
559515--559594	32	2.5	30	82	10	79	60	3	2	33	1.28
565406--565456	10	4.8	10	79	11	57	80	1	11	5	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
565406--565456	22	2.4	21	77	6	57	80	1	11	5	0.97
571448--571479	2	16.0	2	100	0	64	0	0	50	50	1.00
572463--572488	13	2.0	13	100	0	52	23	0	23	53	1.46
577586--577612	11	2.5	11	100	0	54	51	18	7	22	1.70
589630--589672	21	2.0	21	90	4	68	44	0	2	53	1.13
603089--603139	19	2.7	19	79	11	61	54	3	3	37	1.37
618454--618523	16	4.4	16	96	0	104	31	0	35	32	1.58
618962--619022	28	2.2	28	85	5	81	50	3	0	45	1.17
618928--619107	91	2.0	91	88	2	272	47	3	2	46	1.35
618962--619104	44	3.2	42	70	20	119	48	2	2	46	1.28
624122--624180	27	2.1	28	93	3	102	32	13	20	33	1.91
624523--624584	31	2.0	32	87	3	90	27	27	16	29	1.97
625045--625074	14	2.1	15	93	6	53	50	0	10	40	1.36
626870--626896	6	4.5	6	100	0	54	18	33	33	14	1.92
626927--627066	40	3.5	40	76	6	124	30	24	17	27	1.97
628063--628122	7	8.7	7	77	14	54	53	3	1	41	1.27
634992--635043	23	2.3	22	75	21	54	9	23	1	65	1.32
640958--641212	44	5.9	44	86	6	351	41	14	23	21	1.89
640958--641212	86	2.9	86	91	2	395	41	14	23	21	1.89
640959--641212	130	2.0	129	87	4	368	40	14	23	21	1.89
641257--641303	18	2.8	18	78	18	57	4	29	38	27	1.76
642841--642896	22	2.5	22	97	2	103	28	32	0	39	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
642868--642983	51	2.3	51	95	0	205	28	25	0	45	1.54
644780--644814	18	1.9	18	94	0	61	25	31	8	34	1.86
644992--645091	29	3.7	30	69	28	98	45	27	0	28	1.54
645021--645061	20	2.1	19	90	9	64	43	29	0	26	1.55
645056--645269	23	9.3	23	90	5	344	46	22	1	29	1.61
645007--645268	69	3.8	69	86	10	349	45	23	1	29	1.60
645257--645299	23	2.0	21	90	9	68	44	30	0	25	1.55
644967--645295	46	7.0	46	87	7	311	45	24	0	29	1.59
644967--645295	69	4.7	69	78	16	297	45	24	0	29	1.59
645301--645518	116	1.9	116	95	0	391	38	8	10	42	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185