genome.fa.s5.2.7.7.80.10.50.1000.95.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  95  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30274822--30274889	29	2.3	29	82	5	84	27	29	13	29	1.94
30274711--30275038	174	1.9	174	98	0	629	30	24	14	30	1.95
30274991--30275069	29	2.7	30	82	13	110	29	30	15	25	1.96
30281332--30281376	24	1.9	23	95	0	72	48	24	2	24	1.62
30281322--30281378	24	2.5	21	76	17	60	45	26	3	24	1.69
30282287--30282390	42	2.5	42	93	0	172	28	25	16	29	1.97
30285012--30285277	28	9.5	28	95	0	453	34	26	11	27	1.91
30285726--30285755	14	2.1	14	93	0	51	40	0	10	50	1.36
30287634--30287666	17	1.9	17	93	0	57	45	18	6	30	1.73
30289142--30289196	25	2.2	24	87	3	74	47	3	27	21	1.68
30291103--30291149	24	1.9	25	83	12	62	40	17	8	34	1.79
30298021--30298175	78	2.0	78	88	5	233	30	22	16	30	1.96
30302134--30302176	18	2.3	19	84	8	61	44	2	0	53	1.13
30302303--30302411	41	2.6	43	77	12	111	25	15	24	33	1.95
30310358--30310499	70	2.0	70	94	2	250	41	9	19	29	1.83
30310854--30310930	32	2.4	32	80	0	91	44	6	24	24	1.77
30313514--30313579	30	2.2	30	94	0	114	42	6	22	28	1.77
30315401--30315490	23	4.1	23	71	11	98	45	6	26	21	1.76
30315420--30315503	42	2.0	42	95	0	150	45	8	22	23	1.79
30318594--30318656	30	2.1	30	93	0	108	55	15	3	25	1.55
30318686--30318728	22	2.0	22	85	0	59	58	11	11	18	1.63
30318693--30318733	11	3.7	11	80	0	55	56	9	14	19	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30324320--30324503	37	5.2	36	71	13	141	30	22	19	26	1.98
30324340--30324527	104	1.8	104	95	0	340	29	21	19	28	1.98
30325204--30325244	6	7.3	6	83	10	52	80	0	19	0	0.71
30325711--30325753	9	4.7	9	97	2	77	32	0	2	65	1.06
30327900--30327931	6	5.3	6	100	0	64	0	0	15	84	0.63
30330059--30330133	26	2.9	25	84	4	87	37	24	21	17	1.94
30331764--30331802	20	2.0	20	90	10	62	56	5	23	15	1.59
30331798--30331931	66	2.0	66	100	0	268	46	2	15	35	1.61
30333496--30333535	21	1.9	21	89	0	62	45	17	0	37	1.49
30339971--30340004	16	2.1	17	88	5	52	26	8	17	47	1.77
30342349--30342398	26	1.9	26	84	8	66	64	12	6	18	1.47
30358103--30358141	19	2.2	18	86	9	53	74	2	12	10	1.17
30359148--30359222	16	5.2	15	68	23	54	38	0	24	37	1.55
30368418--30368449	13	2.4	14	85	15	50	43	0	0	56	0.99
30370487--30371058	72	8.1	71	76	7	378	34	22	17	25	1.96
30373988--30374640	70	9.3	70	77	6	435	33	23	18	24	1.97
30373993--30374464	138	3.4	139	80	4	416	34	23	18	24	1.96
30374201--30374651	72	6.4	72	82	4	370	35	23	17	23	1.96
30375155--30375212	27	2.1	27	87	0	80	25	22	22	29	1.99
30375172--30375226	27	2.0	27	82	0	65	27	23	25	23	2.00
30375268--30375323	27	2.1	27	86	0	76	25	23	23	28	1.99
30375158--30375487	110	3.0	110	91	0	534	26	21	21	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30375231--30375413	56	3.3	56	66	17	155	25	21	19	33	1.97
30378151--30378313	88	1.9	88	82	0	209	30	27	28	14	1.95
30383936--30384030	45	2.1	45	82	3	111	44	17	13	24	1.85
30383995--30384108	45	2.5	44	81	5	122	43	16	20	19	1.88
30389594--30389940	170	2.0	171	88	0	507	21	13	25	40	1.90
30393180--30393456	130	2.2	130	87	2	398	15	13	14	55	1.69
30393753--30393849	30	3.2	30	86	2	140	25	6	34	34	1.81
30395418--30395520	26	4.0	26	84	0	143	37	24	22	15	1.93
30395419--30395546	52	2.5	52	82	5	125	36	23	22	17	1.94
30395715--30395885	27	6.3	27	88	2	238	25	18	17	38	1.92
30395715--30395885	81	2.1	81	91	2	272	25	18	17	38	1.92
30399396--30399476	39	2.2	37	86	6	110	40	20	13	24	1.89
30399474--30399516	22	2.0	22	85	0	59	48	13	25	11	1.77
30399471--30399546	13	5.8	13	67	22	52	53	13	23	9	1.67
30399472--30399546	36	2.3	31	84	13	89	53	13	24	9	1.68
30400172--30400238	22	3.2	21	76	17	68	43	1	0	55	1.09
30400167--30400226	27	2.3	26	80	11	68	41	1	0	56	1.09
30400965--30401020	16	3.5	16	78	4	60	30	17	5	46	1.71
30404117--30404163	16	2.9	17	75	12	53	46	17	6	29	1.72
30404116--30404170	16	3.4	16	71	16	51	43	20	7	29	1.78
30410046--30410076	15	2.1	15	93	0	53	0	29	0	70	0.87
30410861--30410931	4	18.0	4	89	2	108	26	1	23	47	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30420024--30420070	2	23.5	2	100	0	94	48	0	51	0	1.00
30428047--30428195	74	2.0	74	97	0	280	26	9	15	48	1.75
30432425--30432602	27	6.6	27	81	6	164	30	27	15	26	1.96
30432446--30432601	82	1.9	81	84	6	208	30	27	16	26	1.96
30446498--30446535	20	1.9	20	100	0	76	21	15	23	39	1.92
30446615--30446675	20	3.0	20	73	0	68	21	21	24	32	1.98
30446615--30446710	40	2.4	40	82	8	106	22	21	23	31	1.99
30463546--30463596	24	2.1	24	81	0	57	76	7	11	3	1.13
30468923--30468982	30	2.0	30	90	0	93	35	41	13	10	1.78
30469044--30469086	18	2.4	18	88	0	59	18	27	9	44	1.80
30472372--30472422	26	2.0	26	88	0	75	27	27	23	21	1.99
30475234--30475277	17	2.5	18	81	7	63	79	0	15	4	0.89
30475237--30475275	6	6.5	6	82	11	53	82	0	12	5	0.83
30478359--30478396	16	2.5	15	87	8	51	28	2	5	63	1.30
30488652--30488691	14	2.9	14	92	0	71	32	5	15	47	1.66
30488675--30488714	20	2.0	20	95	0	71	27	10	10	52	1.66
30488660--30488726	34	1.9	35	90	3	109	31	7	11	49	1.67
30488654--30488730	14	5.0	15	75	20	52	32	7	14	45	1.73
30499363--30499439	38	2.0	38	90	5	120	25	22	28	23	1.99
30509522--30509616	48	2.0	48	93	0	163	41	28	7	23	1.81
30513778--30513839	19	3.3	19	65	13	56	62	3	12	20	1.43
30513775--30513851	37	2.1	37	100	0	154	61	5	10	23	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30513927--30513959	10	3.5	10	88	12	52	75	0	0	24	0.80
30514441--30514513	19	3.8	19	96	0	137	36	16	9	36	1.81
30514418--30514513	38	2.4	39	89	6	140	38	16	8	36	1.79
30515025--30516228	44	27.6	44	69	14	502	27	22	20	30	1.98
30515013--30515884	177	5.0	177	80	6	791	26	22	20	30	1.98
30515202--30516228	133	7.9	132	70	12	410	27	22	20	29	1.98
30515335--30515888	217	2.5	215	81	8	654	26	22	20	30	1.98
30515060--30516016	173	5.5	174	81	6	788	26	22	20	30	1.98
30515071--30515884	350	2.3	354	84	4	1076	27	22	20	30	1.98
30515509--30516230	217	3.3	213	80	7	615	27	21	20	30	1.98
30515843--30516245	216	1.9	218	89	2	641	27	21	20	30	1.98
30515645--30516137	172	2.9	173	81	7	472	27	21	20	30	1.98
30515331--30516228	389	2.3	390	92	0	1483	27	21	20	30	1.98
30516618--30516716	44	2.2	44	82	3	128	31	22	19	27	1.98
30516716--30517288	88	6.5	88	84	2	677	21	22	27	28	1.99
30519956--30520183	40	5.7	40	94	0	393	21	26	20	31	1.98
30528853--30528918	31	2.1	31	88	0	96	24	13	34	27	1.93
30530116--30530176	21	3.0	20	75	18	56	55	1	16	26	1.50
30532256--30532300	19	2.3	20	81	14	58	75	6	13	4	1.15
30532292--30532341	15	3.6	14	78	13	50	70	2	24	4	1.15
30537851--30537902	20	2.6	20	78	0	50	50	9	5	34	1.59
30540594--30540644	20	2.5	20	75	12	59	41	19	13	25	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30542105--30542134	15	1.9	16	93	6	53	30	16	0	53	1.44
30551562--30551631	20	3.5	20	70	1	70	31	21	22	24	1.98
30551572--30551688	40	2.9	40	81	5	128	35	22	20	21	1.96
30551756--30551845	38	2.3	38	86	5	119	43	11	23	22	1.85
30553400--30553485	35	2.5	35	78	3	93	29	16	20	33	1.95
30553422--30553500	35	2.3	35	82	8	99	30	16	20	32	1.94
30553422--30553510	35	2.5	35	80	3	90	30	15	21	32	1.94
30555394--30555455	26	2.4	26	86	0	79	41	14	9	33	1.79
30555413--30555468	26	2.2	26	78	9	62	44	10	12	32	1.77
30555811--30555883	36	2.0	36	100	0	146	38	10	10	39	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185