genome.fa.s5.2.7.7.80.10.50.1000.96.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  96  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30559427--30559477	23	2.2	23	89	0	75	27	7	21	43	1.80
30560113--30560203	40	2.3	40	88	0	137	19	26	15	38	1.92
30560578--30560647	26	2.7	26	88	0	95	32	28	10	28	1.89
30566092--30566157	31	2.1	31	88	0	96	24	13	34	27	1.93
30568597--30568771	95	1.9	95	87	1	262	35	16	7	41	1.76
30568582--30568787	94	2.2	95	82	2	265	34	17	7	39	1.79
30569239--30569393	67	2.3	69	81	5	165	38	16	5	38	1.73
30569020--30569566	249	2.2	250	81	6	624	36	18	6	38	1.78
30571582--30571609	3	9.3	3	100	0	56	67	0	0	32	0.91
30579906--30579951	20	2.3	21	82	17	62	43	23	23	8	1.82
30579936--30580061	20	6.3	20	69	14	82	38	19	30	11	1.88
30579945--30580050	40	2.7	40	84	7	119	37	19	30	12	1.89
30582896--30582984	36	2.5	36	89	3	137	41	31	11	15	1.83
30586361--30586398	18	2.1	18	90	0	58	31	10	26	31	1.90
30590664--30590721	30	1.9	30	86	6	82	41	6	24	27	1.80
30591058--30591200	50	2.8	50	89	1	214	25	24	30	19	1.98
30595103--30595145	15	2.9	15	93	3	70	44	6	6	41	1.58
30600463--30600489	8	3.4	8	100	0	54	37	0	11	51	1.37
30602134--30602166	17	1.9	17	93	0	57	66	3	6	24	1.28
30602114--30602157	19	2.3	18	81	11	52	77	0	6	15	0.97
30618328--30618362	5	7.0	5	93	0	61	0	57	0	42	0.99
30618491--30618579	6	15.3	6	76	13	55	17	4	2	75	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30618498--30618579	10	7.7	10	74	18	69	19	3	2	74	1.08
30618503--30618581	41	2.0	40	85	12	108	20	3	2	73	1.11
30618497--30618591	50	2.0	45	84	10	118	22	3	2	72	1.09
30619647--30619692	24	2.0	23	86	4	65	13	6	6	73	1.22
30628666--30628718	26	2.0	26	96	0	97	39	11	13	35	1.80
30633213--30633275	25	2.5	25	81	0	81	26	20	19	33	1.96
30638641--30638692	23	2.3	22	75	21	54	9	23	1	65	1.32
30640179--30640243	20	3.3	19	73	16	51	38	16	21	23	1.93
30640788--30640853	21	3.0	22	86	4	80	30	4	30	34	1.78
30644871--30644915	19	2.3	20	88	3	65	6	13	2	77	1.05
30648420--30648462	16	2.7	16	96	0	77	13	13	0	72	1.13
30648803--30648865	21	3.0	21	88	2	90	30	3	33	33	1.74
30650821--30650879	20	2.9	19	79	16	66	25	28	11	33	1.91
30652228--30652266	11	3.5	11	85	0	60	79	2	5	12	1.00
30652228--30652270	12	3.8	12	81	12	63	74	2	6	16	1.14
30666706--30666764	20	2.9	19	79	16	66	25	28	11	33	1.91
30669433--30669499	28	2.4	27	87	5	89	28	7	11	52	1.65
30679761--30679793	3	11.3	3	93	6	59	69	0	30	0	0.88
30684113--30684442	164	2.0	165	84	5	436	32	10	20	36	1.87
30687867--30687907	7	5.4	7	83	16	55	80	0	4	14	0.87
30691669--30691697	14	2.1	14	100	0	58	20	24	6	48	1.74
30695628--30695671	16	2.8	16	79	10	54	70	0	4	25	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30697342--30697597	29	8.9	29	77	3	194	36	21	17	25	1.94
30697344--30697597	87	2.9	86	80	4	262	36	21	17	24	1.94
30720845--30720895	25	2.0	25	100	0	102	23	27	15	33	1.95
30721408--30721439	16	2.0	16	93	0	55	46	0	0	53	1.00
30741832--30741877	23	2.0	22	95	4	83	52	4	28	13	1.58
30744203--30744259	26	2.2	26	90	6	89	33	14	8	43	1.76
30745703--30745946	52	4.7	52	79	1	229	30	13	17	38	1.88
30746128--30746205	31	2.5	31	81	8	95	28	10	32	29	1.90
30746128--30746197	32	2.2	33	82	10	92	30	11	30	28	1.92
30746182--30746215	16	2.2	16	89	5	52	20	5	38	35	1.77
30747176--30747201	2	13.0	2	100	0	52	50	0	50	0	1.00
30749665--30749751	43	2.0	43	97	0	165	33	21	20	24	1.97
30751967--30752155	50	3.7	50	78	7	164	28	19	27	24	1.99
30752407--30752445	12	3.2	12	85	0	51	51	5	23	20	1.67
30755009--30755043	18	1.9	18	88	0	52	5	8	0	85	0.73
30755565--30755603	19	2.0	20	90	5	62	35	5	17	41	1.72
30760963--30761035	19	3.9	19	70	10	53	61	2	8	27	1.38
30760956--30761031	36	2.1	35	88	7	109	60	2	7	28	1.38
30761406--30761445	21	1.9	21	90	10	64	37	7	0	55	1.29
30761302--30761522	10	23.2	9	67	17	74	33	4	0	60	1.24
30761459--30761555	19	5.3	18	77	12	92	34	3	1	61	1.18
30761492--30761532	18	2.2	19	91	4	66	36	4	0	58	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30761561--30761621	33	1.9	33	86	6	90	52	14	1	31	1.52
30762887--30762951	32	2.0	32	100	0	130	52	3	12	32	1.54
30763489--30763559	34	2.1	34	92	5	117	40	4	19	35	1.71
30764117--30764227	28	4.0	28	82	2	134	36	16	17	30	1.91
30764102--30764226	56	2.2	56	83	4	146	35	17	17	29	1.93
30764117--30764227	56	2.0	56	85	3	152	36	16	17	30	1.91
30767567--30767616	25	2.0	25	100	0	100	20	16	32	32	1.94
30768176--30768372	49	4.0	49	79	6	157	31	23	16	28	1.96
30768966--30769204	50	4.6	50	84	3	280	26	23	28	20	1.99
30795646--30795714	14	4.2	17	68	24	58	44	1	1	52	1.19
30795734--30795818	34	2.5	34	76	12	86	70	4	22	2	1.17
30796686--30796820	40	3.4	39	73	11	123	27	17	22	32	1.96
30803276--30803316	19	2.2	19	100	0	82	36	4	14	43	1.67
30807184--30807265	41	2.0	41	88	4	121	31	8	13	46	1.73
30810255--30810291	18	2.1	18	94	0	65	21	13	5	59	1.54
30814117--30814162	9	5.1	9	86	0	56	36	13	36	13	1.83
30814920--30814951	16	2.0	16	100	0	64	56	0	12	31	1.37
30816278--30816339	11	5.6	11	75	19	58	22	29	1	46	1.61
30816279--30816339	22	2.8	23	80	14	76	22	29	1	45	1.62
30816301--30816400	51	2.0	51	84	7	132	25	26	2	47	1.63
30818205--30818248	18	2.4	18	88	0	61	18	27	9	45	1.79
30818760--30818980	27	7.3	31	71	21	159	43	33	0	22	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30818774--30819039	27	9.0	27	68	19	115	43	33	0	22	1.58
30818738--30819024	119	2.3	124	86	8	410	44	33	1	20	1.59
30818944--30819060	59	2.0	59	96	0	216	47	32	0	19	1.56
30819075--30819100	6	4.3	6	100	0	52	38	46	0	15	1.46
30819197--30819261	19	3.5	19	71	12	71	46	9	4	40	1.57
30819141--30819320	96	1.9	95	92	1	306	43	7	9	40	1.65
30819315--30819363	22	2.2	23	88	3	73	46	2	2	48	1.25
30819990--30820082	11	7.9	11	72	13	78	19	3	34	43	1.67
30819977--30820079	24	4.3	24	100	0	206	19	3	33	42	1.69
30821382--30821417	7	5.3	7	90	6	56	0	13	0	86	0.58
30827376--30827438	27	2.3	27	88	0	99	23	25	30	20	1.99
30828511--30828547	17	2.2	17	95	0	65	29	24	13	32	1.93
30829099--30829232	53	2.5	53	87	2	198	23	28	21	26	1.99
30835572--30835742	85	2.0	85	96	0	315	39	13	14	32	1.84
30836451--30836525	38	2.0	38	97	0	141	58	8	28	5	1.48
30837897--30837957	29	2.2	28	85	5	79	57	0	1	40	1.08
30837890--30837957	27	2.4	27	82	4	82	58	0	1	39	1.07
30838173--30838240	29	2.3	30	75	12	70	50	5	2	41	1.42
30841235--30841274	18	2.2	19	86	4	55	40	7	30	22	1.81
30844156--30844213	5	10.8	5	82	10	62	20	22	1	55	1.53
30844156--30844213	22	2.7	22	89	2	82	20	22	1	55	1.53
30844156--30844213	17	3.6	15	84	9	62	20	22	1	55	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30844338--30844429	5	16.2	5	73	22	58	30	18	0	51	1.47
30844338--30844429	28	3.2	29	79	11	118	30	18	0	51	1.47
30844335--30844417	23	3.6	23	78	4	87	30	19	0	50	1.48
30844422--30844462	20	2.1	20	90	4	66	24	4	0	70	1.06
30844812--30844863	23	2.4	22	77	22	65	11	19	0	69	1.18
30844815--30844898	24	3.3	24	85	9	98	15	17	1	65	1.34
30844834--30844909	5	14.6	5	83	8	82	17	18	1	63	1.39
30844834--30844909	22	3.7	20	82	5	82	17	18	1	63	1.39
30844825--30844909	11	8.4	10	73	19	61	16	17	1	64	1.35
30844896--30844993	18	5.1	18	75	18	90	25	11	1	62	1.35

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185