genome.fa.s5.2.7.7.80.10.50.1000.160.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  160  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48060061--48060115	18	3.0	19	68	26	55	61	5	0	32	1.19
48060187--48060229	20	2.3	18	80	8	50	62	4	0	32	1.15
48060651--48060710	26	2.2	27	82	11	70	58	3	1	36	1.25
48061343--48061372	8	3.8	8	95	0	51	13	3	0	83	0.77
48063217--48063254	14	2.7	14	80	15	51	42	5	0	52	1.24
48068017--48068050	18	1.9	17	88	5	50	20	5	0	73	1.04
48080067--48080119	23	2.4	22	76	20	56	9	18	1	69	1.25
48097779--48097821	21	2.0	21	95	0	77	27	0	37	34	1.57
48097802--48097834	16	2.1	16	94	0	57	33	0	36	30	1.58
48097813--48097907	45	2.1	44	88	1	136	34	5	27	32	1.79
48098069--48098103	18	2.0	17	88	5	52	54	0	0	45	0.99
48098027--48098099	27	2.7	27	76	8	76	52	2	0	45	1.15
48097988--48098259	144	1.9	147	94	3	487	46	3	2	47	1.34
48098213--48098247	18	2.0	17	88	5	52	54	0	0	45	0.99
48098233--48098411	55	3.1	54	64	22	128	49	7	2	41	1.43
48098228--48098415	61	3.1	61	68	14	190	49	6	2	41	1.41
48098196--48098418	120	1.9	120	97	0	419	49	6	2	42	1.40
48098333--48098367	18	2.0	17	88	5	52	60	0	0	40	0.97
48098408--48098454	17	2.9	16	78	18	53	46	2	6	44	1.40
48098427--48098460	17	2.0	17	94	0	59	50	0	5	44	1.26
48102462--48102534	37	2.0	37	88	0	110	49	6	2	41	1.44
48102476--48102536	17	3.4	18	71	11	54	47	4	3	44	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48102471--48102582	20	5.8	20	65	12	56	45	5	4	44	1.46
48102764--48102803	7	5.9	7	86	13	57	52	0	2	45	1.14
48105560--48105662	51	2.0	52	98	1	199	26	15	19	38	1.91
48113907--48113944	20	1.9	20	88	0	58	50	5	0	44	1.24
48114593--48114654	30	2.2	27	85	8	79	50	4	0	45	1.23
48114633--48115456	264	3.2	257	81	7	926	46	7	7	38	1.61
48115003--48115047	5	9.0	5	87	0	63	40	2	2	55	1.24
48122741--48122770	5	6.2	5	92	7	53	20	0	0	80	0.72
48124727--48124773	21	2.3	20	88	3	67	23	4	29	42	1.73
48124727--48124758	7	4.6	7	92	0	55	28	3	28	40	1.71
48129326--48129372	21	2.3	20	92	3	76	23	4	29	42	1.73
48130162--48130211	15	3.3	15	82	0	55	24	6	2	68	1.23
48138189--48138223	18	2.0	17	88	5	52	45	0	0	54	0.99
48138333--48138367	18	2.0	17	88	5	52	45	0	0	54	0.99
48138533--48138620	45	2.0	45	86	2	124	29	29	5	35	1.80
48138514--48138620	45	2.5	43	80	8	123	28	28	5	36	1.80
48138602--48138634	16	2.1	16	94	0	57	30	36	0	33	1.58
48138615--48138657	21	2.0	21	95	0	77	34	37	0	27	1.57
48142314--48142350	18	2.1	18	94	0	65	64	21	8	5	1.40
48143207--48143232	11	2.4	11	100	0	52	7	38	7	46	1.61
48146389--48146430	15	2.7	16	82	14	52	45	0	2	52	1.13
48146380--48146421	15	2.9	15	82	10	52	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48146533--48146567	18	2.0	17	88	5	52	45	0	0	54	0.99
48146364--48146680	157	2.0	157	95	0	562	47	4	2	44	1.38
48146803--48146838	16	2.2	16	100	0	72	38	36	0	25	1.56
48147307--48147360	27	2.0	27	85	7	74	29	1	0	68	1.00
48148623--48148648	7	3.7	7	100	0	52	38	0	0	61	0.96
48155081--48155133	27	2.0	27	92	0	88	20	33	24	20	1.97
48155195--48155303	51	2.2	50	85	6	148	43	14	12	29	1.83
48156685--48156873	105	1.8	105	92	2	326	27	9	27	35	1.88
48162228--48162259	7	4.6	7	96	0	55	46	9	0	43	1.35
48163195--48163240	14	3.4	14	84	3	58	56	10	2	30	1.46
48165452--48165910	50	9.2	50	69	4	300	23	23	21	30	1.99
48165429--48165914	100	4.9	100	94	1	814	23	23	22	30	1.99
48171274--48171319	14	3.4	14	84	3	58	56	10	2	30	1.46
48182272--48182329	28	2.1	28	90	0	89	27	27	20	24	1.99
48183950--48183999	20	2.7	18	77	22	59	50	4	2	44	1.32
48184018--48184075	17	3.4	17	76	9	55	50	0	0	50	1.00
48188008--48188055	19	2.5	19	90	6	71	54	6	4	35	1.45
48190630--48190787	42	3.8	42	75	5	133	18	21	17	42	1.89
48193662--48193890	59	3.9	59	98	0	431	45	9	4	40	1.57
48193891--48193953	23	2.7	23	78	7	65	46	3	1	49	1.27
48195117--48195234	25	4.8	25	72	7	71	31	19	27	21	1.97
48195404--48195466	24	2.6	24	85	7	74	31	19	28	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48204191--48204332	71	2.0	71	97	0	266	22	12	16	48	1.79
48211884--48211942	19	3.4	19	68	22	65	52	13	8	25	1.68
48211880--48211945	33	2.0	33	100	0	132	54	12	9	24	1.66
48214640--48214708	34	2.0	34	85	0	93	39	17	10	33	1.83
48221169--48221235	32	2.1	32	86	10	93	20	0	20	58	1.40
48226082--48226106	6	4.2	6	100	0	50	16	36	0	48	1.46
48228613--48228667	26	2.1	26	83	6	67	29	7	23	40	1.81
48230097--48230130	12	2.8	12	91	8	52	73	5	0	20	1.04
48242404--48242441	18	2.0	20	85	10	53	31	5	2	60	1.33
48242853--48243294	79	5.6	79	83	6	404	41	9	12	36	1.76
48244989--48245033	22	2.0	22	100	0	90	40	31	8	20	1.83
48247295--48247932	78	8.2	79	83	8	684	38	14	9	37	1.79
48247308--48247930	161	4.0	157	85	8	735	38	14	9	37	1.78
48247742--48247876	70	2.0	69	88	4	202	40	13	8	37	1.76
48250968--48251014	22	2.2	22	85	11	62	55	0	4	40	1.19
48254996--48255048	21	2.5	21	81	0	61	35	33	1	28	1.68
48255837--48255878	20	2.0	21	86	13	61	54	19	2	23	1.55
48255966--48256031	32	2.1	32	91	5	107	37	7	6	48	1.56
48258400--48258508	36	3.0	36	97	0	200	29	20	12	37	1.90
48258355--48258483	36	3.2	42	80	15	139	29	21	12	36	1.90
48270935--48270994	9	6.6	9	75	9	50	33	1	6	58	1.34
48270930--48271030	19	5.3	18	71	12	69	30	0	9	58	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48270930--48271015	28	3.1	27	75	9	75	31	1	9	58	1.37
48270983--48271058	22	3.7	20	75	14	66	32	0	7	59	1.26
48271039--48271093	27	2.0	28	82	13	69	30	1	1	65	1.13
48272333--48272424	19	4.8	19	91	0	157	35	15	10	38	1.82
48272310--48272424	38	2.9	38	88	5	158	38	14	9	37	1.79
48275113--48275193	3	26.7	3	80	7	92	32	3	2	61	1.26
48275448--48275484	16	2.2	18	85	9	51	32	5	2	59	1.34
48283765--48283791	6	4.5	6	100	0	54	55	0	0	44	0.99
48284420--48284509	41	2.2	41	86	4	119	17	33	22	26	1.96
48285488--48285617	40	3.3	40	78	9	124	34	24	16	23	1.95
48291480--48291537	19	3.1	19	80	7	64	46	6	3	43	1.47
48301727--48301795	34	2.0	34	100	0	138	31	20	11	36	1.88
48303719--48303776	17	3.4	18	83	9	77	41	0	0	58	0.98
48306862--48306921	22	2.7	21	89	5	84	38	15	23	23	1.92
48308060--48308199	70	2.0	70	90	0	217	35	19	15	29	1.93
48308815--48308866	26	2.0	27	88	3	79	63	3	1	30	1.23
48309735--48309771	16	2.3	15	90	9	56	78	0	10	10	0.97
48309735--48309771	17	2.2	17	95	4	67	78	0	10	10	0.97
48310301--48310355	21	2.6	22	85	8	78	27	9	36	27	1.87
48310519--48310652	18	7.9	18	69	17	90	57	2	0	39	1.16
48310570--48310625	15	4.0	15	73	17	57	55	1	0	42	1.10
48310575--48310773	59	3.3	58	71	16	192	54	4	1	40	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48310553--48310795	120	2.0	120	97	0	459	51	4	1	42	1.32
48313086--48313123	6	6.2	6	87	6	58	39	0	60	0	0.97
48313089--48313135	12	3.9	12	79	15	53	40	0	59	0	0.97
48313086--48313135	18	2.8	18	90	0	73	42	0	58	0	0.98
48314782--48314806	13	1.9	13	100	0	50	40	48	0	12	1.40
48314787--48314861	38	1.9	39	89	2	116	52	25	2	20	1.60
48320451--48320497	11	4.3	11	86	7	60	25	27	0	46	1.53
48320451--48320494	10	4.1	10	83	11	52	25	29	0	45	1.54
48322300--48322342	18	2.4	18	88	0	59	20	25	6	46	1.76
48322765--48322883	49	2.4	49	94	0	202	45	3	7	43	1.49

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185