genome.fa.s5.2.7.7.80.10.50.1000.114.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  114  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35660834--35660892	24	2.4	24	91	2	91	25	25	15	33	1.95
35661865--35661982	40	3.0	40	83	3	143	20	23	13	42	1.88
35661865--35661958	38	2.4	37	86	8	125	23	22	12	41	1.88
35670715--35670820	37	2.9	37	92	2	180	24	20	16	37	1.93
35670784--35671247	235	2.0	235	98	0	892	31	20	9	38	1.85
35674129--35674160	14	2.2	15	94	5	57	75	0	6	18	1.01
35674307--35674339	16	2.1	16	94	0	57	72	0	0	27	0.85
35674277--35674438	53	3.0	53	76	13	168	58	0	6	35	1.23
35674395--35674478	23	3.6	23	76	9	71	50	1	7	41	1.37
35677244--35677277	17	1.9	18	94	5	61	0	29	0	70	0.87
35678007--35678054	24	2.0	24	84	8	62	27	4	4	64	1.30
35686991--35687048	22	2.6	22	94	0	98	29	55	3	12	1.53
35698324--35698497	69	2.5	70	84	3	201	28	14	22	33	1.94
35698515--35698759	76	3.3	74	87	4	350	34	15	18	31	1.92
35699157--35699212	25	2.2	25	83	6	67	33	14	7	44	1.72
35699186--35699383	73	2.7	72	88	6	283	31	16	18	32	1.94
35699541--35700089	286	1.9	287	85	0	767	33	17	23	25	1.96
35700442--35700499	22	2.6	22	91	0	89	27	55	5	12	1.58
35701593--35701635	15	2.9	15	78	21	54	30	4	0	65	1.13
35701600--35701650	21	2.4	21	87	12	70	29	7	0	62	1.23
35714557--35714730	69	2.5	70	85	5	212	28	14	22	33	1.94
35714748--35715160	75	5.5	74	90	3	580	32	15	20	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35714748--35715155	147	2.7	148	87	4	588	32	15	20	31	1.94
35715450--35715673	73	3.0	73	82	11	278	26	20	20	32	1.97
35715304--35715775	234	2.0	231	80	8	524	27	18	20	33	1.96
35716258--35716368	53	2.1	53	96	0	204	25	21	14	38	1.91
35721515--35721555	18	2.3	18	100	0	82	48	9	12	29	1.72
35725912--35725972	30	2.0	31	83	3	79	50	6	9	32	1.61
35730416--35730482	31	2.2	31	86	5	91	34	1	13	50	1.51
35732255--35732293	20	2.0	20	84	0	51	46	0	2	51	1.14
35733310--35733388	31	2.5	30	82	15	90	50	0	0	49	1.00
35733333--35733380	20	2.4	20	79	6	53	50	0	0	50	1.00
35733347--35733392	19	2.5	19	76	13	51	56	0	0	43	0.99
35733559--35733590	16	2.0	16	100	0	64	25	12	25	37	1.91
35733930--35733971	19	2.3	19	87	4	59	61	7	0	30	1.22
35733930--35733997	19	3.3	19	80	15	57	57	5	0	36	1.23
35736178--35736253	31	2.5	31	91	4	118	34	2	10	52	1.50
35746661--35746697	18	2.1	18	100	0	74	21	5	40	32	1.76
35750351--35750466	59	2.0	59	100	0	232	17	24	26	31	1.97
35752871--35753087	47	4.7	45	75	6	159	25	28	19	25	1.99
35767191--35767318	47	2.7	46	81	7	150	22	29	19	28	1.98
35778647--35778742	48	2.0	48	91	0	156	51	11	14	22	1.75
35779073--35779118	20	2.3	20	88	0	65	80	0	6	13	0.89
35779078--35779118	14	3.1	14	82	13	59	82	0	4	12	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35793868--35794019	76	2.0	75	93	1	259	36	21	19	21	1.94
35797488--35797704	40	5.4	40	83	4	237	23	22	28	25	2.00
35798819--35798861	6	6.8	6	84	10	59	13	2	0	83	0.74
35798819--35798863	20	2.2	20	96	0	81	13	2	0	84	0.72
35798819--35798883	14	4.7	14	78	14	64	15	4	0	80	0.88
35798832--35798888	20	2.9	21	80	15	59	14	5	0	80	0.87
35801774--35801806	13	2.6	13	90	4	50	30	0	12	57	1.35
35846558--35846717	85	1.9	85	97	0	302	30	11	30	28	1.91
35847195--35847452	40	6.5	39	80	7	218	25	20	28	25	1.99
35847195--35847452	80	3.3	79	81	4	261	25	20	28	25	1.99
35847195--35847417	40	5.6	40	86	3	245	24	20	28	26	1.99
35847271--35847452	79	2.3	80	83	1	224	25	20	28	25	1.99
35856626--35856674	16	3.1	16	93	0	80	28	0	36	34	1.58
35856658--35856752	45	2.1	44	86	1	127	34	5	26	33	1.79
35856890--35856944	25	2.2	25	84	9	69	52	1	0	45	1.11
35867476--35867683	42	4.9	41	75	12	165	17	28	34	19	1.95
35867893--35867971	24	3.3	24	85	5	106	6	37	35	20	1.78
35867989--35868142	42	3.6	42	76	6	159	16	32	34	16	1.92
35867979--35868142	85	1.9	85	86	2	231	15	32	34	17	1.91
35871620--35874136	42	59.5	43	85	4	2931	16	34	32	16	1.92
35871620--35874136	85	29.7	86	86	3	2931	16	34	32	16	1.92
35874355--35874492	70	2.0	70	95	0	249	16	24	33	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35875616--35875659	21	2.0	22	91	4	72	31	25	25	18	1.97
35876281--35877467	42	28.2	41	78	7	879	16	30	34	19	1.94
35876281--35877467	84	14.1	84	80	7	1083	16	30	34	19	1.94
35877820--35877885	33	2.0	33	96	0	123	12	25	30	31	1.92
35895147--35895217	24	3.0	24	82	0	79	11	38	30	19	1.87
35895333--35895608	42	6.5	41	78	8	229	14	31	34	19	1.92
35895235--35895396	85	1.9	84	83	3	209	16	30	33	19	1.94
35895370--35896448	85	12.7	83	78	6	783	16	31	33	18	1.94
35895230--35896412	43	27.9	43	76	7	951	17	31	33	18	1.94
35895582--35896333	299	2.5	297	89	3	1084	18	31	32	17	1.94
35895230--35896412	256	4.7	254	75	8	912	17	31	33	18	1.94
35895290--35896412	171	6.6	170	75	9	620	17	31	33	18	1.94
35895582--35896443	299	2.9	295	86	5	1070	17	31	33	17	1.94
35896343--35896419	35	2.2	35	95	0	136	9	35	36	19	1.84
35896386--35896478	43	2.2	43	88	3	134	12	29	40	17	1.86
35897526--35898052	263	2.0	263	97	0	1000	25	20	23	29	1.99
35898248--35898333	42	2.0	42	95	0	154	33	25	29	11	1.91
35904161--35904494	42	7.9	42	75	9	268	18	26	33	21	1.97
35904161--35904456	85	3.5	83	78	6	301	18	26	33	22	1.97
35904704--35904776	24	3.0	23	80	7	67	8	38	31	21	1.83
35904897--35904985	33	2.7	33	85	5	117	13	31	34	20	1.91
35904936--35905393	43	10.8	41	69	10	201	16	30	34	18	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35904936--35905238	85	3.6	83	77	7	268	16	32	32	18	1.94
35905173--35905357	85	2.2	85	81	5	214	14	29	37	18	1.90
35908148--35908439	42	6.9	42	73	12	213	18	27	34	19	1.95
35908201--35908428	84	2.7	85	83	6	300	17	27	35	18	1.94
35908669--35908726	24	2.4	25	80	8	66	8	37	34	18	1.82
35908731--35909410	43	15.9	43	75	6	508	16	31	33	18	1.93
35908751--35909430	85	8.0	84	77	7	482	16	31	33	18	1.93
35908744--35909153	170	2.4	170	87	0	550	17	31	32	18	1.94
35908733--35909281	128	4.3	128	75	7	461	16	32	32	18	1.94
35910245--35910415	93	1.8	93	94	2	308	15	26	28	29	1.96
35921524--35921587	17	3.6	17	74	15	67	28	12	12	46	1.78
35921516--35921584	36	1.9	36	96	0	129	27	13	13	46	1.79
35921516--35921567	19	2.9	18	72	16	54	26	13	13	46	1.80
35922742--35922991	42	5.9	42	71	13	190	19	26	34	20	1.96
35922759--35922980	84	2.6	85	83	8	283	18	26	35	19	1.95
35923203--35923277	24	3.1	24	78	0	87	9	38	36	16	1.80
35923296--35923696	42	9.5	42	71	9	242	17	28	33	19	1.95
35923283--35923667	211	1.8	212	84	2	524	17	29	33	20	1.95
35927464--35927570	43	2.5	42	83	5	119	21	26	32	19	1.97
35932844--35932921	24	3.2	24	83	0	93	10	39	32	17	1.84
35933022--35933283	42	6.2	42	77	5	179	15	31	33	19	1.93
35933061--35933555	85	5.8	84	79	3	463	16	31	34	17	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35932973--35933555	43	13.7	43	76	6	411	16	31	33	18	1.93
35932979--35933431	170	2.7	171	79	3	448	17	32	32	18	1.94
35932972--35933510	128	4.2	126	78	5	424	16	31	33	18	1.93
35935057--35935127	36	2.0	36	94	5	126	23	14	36	25	1.92
35941335--35941669	42	7.9	42	77	10	317	17	28	33	20	1.95
35941335--35941633	85	3.5	84	81	6	354	17	28	33	20	1.96
35941878--35941955	24	3.2	24	85	0	102	8	38	33	19	1.83
35942101--35942647	85	6.4	84	78	5	456	15	30	34	19	1.93
35941961--35942642	43	16.0	42	76	6	446	16	30	33	19	1.93
35942040--35942501	128	3.6	128	77	5	389	15	31	33	19	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185