genome.fa.s5.2.7.7.80.10.50.1000.148.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  148  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44820178--44820693	214	2.4	215	92	1	856	29	17	20	33	1.95
44826448--44826482	18	1.9	18	88	0	52	20	2	25	51	1.61
44833449--44833474	7	3.7	7	100	0	52	42	0	46	11	1.40
44835277--44835321	20	2.2	20	88	0	63	35	4	2	57	1.31
44835429--44835453	12	2.1	12	100	0	50	52	0	0	48	1.00
44835432--44835483	26	2.2	22	86	13	68	42	1	0	55	1.10
44839606--44839634	6	4.8	6	100	0	58	34	0	0	65	0.93
44840796--44840825	6	5.0	6	100	0	60	0	33	0	66	0.92
44856197--44856240	18	2.5	17	88	7	61	34	0	2	63	1.07
44863064--44863398	166	2.0	166	99	0	661	25	17	14	41	1.88
44867431--44867481	24	2.1	24	85	0	66	37	3	7	50	1.50
44874552--44874579	11	2.5	11	100	0	56	42	0	0	57	0.99
44874555--44874634	21	3.8	21	67	16	58	43	3	0	52	1.19
44874550--44874653	21	4.9	20	67	15	57	43	5	0	50	1.26
44881250--44881287	3	12.7	3	100	0	76	65	0	0	34	0.93
44888698--44888767	29	2.5	28	80	8	72	28	5	1	64	1.25
44888737--44888771	17	2.1	16	89	10	52	28	2	5	62	1.32
44904973--44905020	25	1.9	25	87	8	71	20	25	20	33	1.97
44912200--44912244	21	2.0	23	83	8	58	13	48	17	20	1.80
44913800--44914096	110	2.7	108	91	2	452	30	15	20	33	1.94
44924735--44926244	753	2.0	753	99	0	2957	36	19	10	33	1.86
44930242--44930338	50	2.0	49	91	2	158	28	26	15	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44945989--44946073	24	3.5	24	74	7	82	31	17	28	22	1.97
44945992--44946089	49	2.0	49	82	4	117	32	18	27	21	1.96
44948911--44949037	47	2.5	51	74	15	138	39	6	15	38	1.73
44949148--44949293	41	3.6	40	88	1	211	18	19	30	31	1.96
44949151--44949323	82	2.1	82	83	0	211	19	17	29	33	1.95
44953031--44953066	18	2.0	18	88	0	54	66	5	19	8	1.38
44954751--44954858	44	2.4	44	87	3	144	29	23	13	33	1.93
44962150--44962257	44	2.4	44	87	3	144	29	23	13	33	1.93
44965755--44965835	24	3.3	24	76	8	83	17	24	20	37	1.94
44968475--44968541	34	1.9	35	87	3	100	31	8	14	44	1.76
44968632--44968741	53	2.1	53	100	0	220	37	3	6	52	1.44
44970472--44970523	17	3.1	17	78	8	52	44	0	0	55	0.99
44981854--44981951	29	3.4	29	92	0	151	23	21	4	51	1.65
44981902--44981951	14	3.5	15	72	8	50	24	22	6	48	1.73
44981843--44981951	58	1.9	57	86	1	155	22	21	5	50	1.69
44982527--44982577	5	10.2	5	87	8	68	76	0	23	0	0.79
44982527--44982595	20	3.5	20	74	18	65	73	1	24	0	0.91
44982678--44982723	9	4.7	10	82	12	51	82	0	13	4	0.81
44982979--44983010	16	1.9	17	93	6	57	81	0	18	0	0.70
44985738--44985917	41	4.4	41	89	0	279	23	16	22	37	1.93
44985738--44985953	82	2.6	82	85	2	229	25	15	22	37	1.93
44995111--44995203	46	2.0	46	95	0	168	29	27	9	33	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44996403--44996450	17	2.9	16	81	9	60	47	16	8	27	1.75
45005299--45005904	76	7.9	76	83	3	770	26	19	20	33	1.97
45005301--45005904	151	4.0	152	88	0	791	26	19	20	33	1.97
45006385--45006433	23	2.1	23	96	0	89	14	12	14	59	1.62
45006501--45006581	29	2.8	29	83	3	101	23	18	4	53	1.64
45007125--45007197	7	9.4	7	75	16	56	73	0	24	1	0.90
45007117--45007157	19	2.2	19	90	0	64	80	0	17	2	0.82
45007589--45007621	16	2.0	17	94	5	59	78	0	21	0	0.75
45008378--45008434	29	2.1	27	84	12	73	49	8	8	33	1.65
45008676--45008709	3	12.0	3	87	12	54	67	0	32	0	0.91
45008675--45008708	11	3.1	11	87	12	52	70	0	29	0	0.87
45008666--45008705	19	2.1	19	90	9	64	70	0	30	0	0.88
45008734--45008762	4	7.2	4	100	0	58	75	0	24	0	0.80
45015654--45015682	15	1.9	15	100	0	58	0	24	0	75	0.80
45015655--45015702	18	2.5	19	83	10	62	0	31	0	68	0.90
45016860--45016910	19	2.7	19	77	14	61	35	3	1	58	1.28
45020831--45020862	16	1.9	17	93	6	57	75	3	0	21	0.95
45020792--45020878	27	3.2	27	71	12	72	63	2	3	31	1.23
45022757--45022813	23	2.5	22	83	8	71	61	1	1	35	1.17
45024596--45024636	19	2.0	21	86	9	59	41	19	24	14	1.89
45026281--45026370	39	2.2	40	84	3	110	37	3	6	52	1.44
45032335--45032395	32	2.0	31	83	6	79	36	3	21	39	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45041101--45041147	22	2.1	22	84	7	60	36	2	4	57	1.30
45041228--45041350	35	3.3	35	77	16	149	49	9	2	38	1.49
45041228--45041302	33	2.2	34	88	4	107	50	9	1	38	1.43
45041220--45041362	76	1.9	76	94	2	252	48	9	4	37	1.57
45044750--45044825	20	3.8	19	71	10	62	35	9	0	55	1.32
45044750--45044801	21	2.6	19	77	11	59	38	7	0	53	1.30
45046299--45046354	26	2.2	26	84	9	71	58	0	10	30	1.32
45048103--45048865	44	16.9	44	69	12	303	28	20	19	31	1.97
45048006--45048638	227	2.8	226	88	2	930	29	20	19	31	1.96
45048325--45048487	89	1.8	88	84	1	218	27	22	20	30	1.98
45047963--45048678	225	3.2	227	85	3	969	29	20	18	31	1.97
45048414--45048860	183	2.4	183	88	1	655	28	20	18	32	1.96
45048010--45048869	227	3.8	226	83	4	717	28	20	18	32	1.96
45049645--45049699	24	2.3	24	93	0	92	29	23	10	36	1.89
45050673--45050722	26	2.0	26	92	4	84	24	2	8	66	1.29
45055867--45055922	26	2.2	25	84	9	69	58	1	10	28	1.41
45057836--45057939	10	10.9	10	71	21	73	55	0	1	41	1.17
45057821--45057924	22	5.2	21	73	19	80	52	0	3	42	1.26
45057838--45057937	9	10.8	9	72	19	73	56	1	2	41	1.18
45057909--45057939	16	1.9	16	100	0	62	64	0	0	35	0.94
45058159--45058208	17	2.9	17	81	18	59	34	6	2	58	1.34
45067673--45067711	17	2.3	17	90	0	60	10	48	23	17	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45068296--45068369	37	2.0	37	97	0	139	12	32	20	35	1.89
45068682--45068721	12	3.2	12	89	3	53	32	5	2	60	1.32
45073023--45073067	21	2.0	22	83	8	56	26	20	0	53	1.46
45073791--45073859	25	2.8	25	86	8	113	79	8	0	11	0.93
45073785--45073853	9	8.5	8	81	10	70	82	7	0	10	0.84
45073791--45073859	16	4.2	16	82	14	95	79	8	0	11	0.93
45073872--45073917	6	7.3	6	88	9	65	78	0	19	2	0.86
45074728--45074771	15	2.6	17	82	17	65	77	0	11	11	1.00
45074736--45074771	8	4.6	8	93	6	65	77	0	11	11	0.99
45074728--45074778	16	3.1	16	83	8	59	76	0	11	11	1.02
45076046--45076360	44	7.2	44	64	18	154	25	23	25	25	2.00
45075998--45076413	88	4.7	88	93	2	642	27	24	24	24	2.00
45076479--45076946	44	10.6	45	68	13	240	30	19	21	28	1.98
45076432--45077040	175	3.5	175	89	1	945	31	19	21	27	1.97
45078511--45078550	12	3.2	12	89	3	53	32	5	2	60	1.32
45079442--45079750	108	2.9	109	92	1	491	30	16	20	33	1.94
45084380--45084420	19	2.2	19	86	0	55	39	0	0	60	0.96
45090244--45090268	3	8.3	3	100	0	50	0	0	32	68	0.90
45090989--45091064	37	2.0	39	82	10	95	51	1	0	47	1.09
45091033--45091062	15	2.1	14	93	6	51	56	0	0	43	0.99
45091021--45091129	31	3.4	32	68	22	93	54	1	0	43	1.17
45100720--45101155	35	12.8	34	84	6	496	18	23	17	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45100720--45101155	102	4.3	102	93	2	709	18	23	17	40	1.91
45109045--45109124	25	3.2	25	80	0	97	20	26	17	36	1.94
45109045--45109179	25	5.5	25	74	6	96	17	26	20	34	1.95
45109128--45109233	24	4.4	23	70	16	63	16	25	22	35	1.94
45111049--45111155	25	4.3	25	75	2	90	33	21	26	18	1.96
45114126--45114282	51	3.1	50	84	6	217	31	26	15	25	1.96
45114132--45114299	51	3.3	50	81	6	196	32	26	15	26	1.96
45115463--45115494	16	1.9	17	93	6	57	43	9	0	46	1.35
45127743--45127786	16	2.8	16	86	3	63	40	0	4	54	1.21
45133626--45133725	49	2.0	49	100	0	200	28	22	14	36	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185