genome.fa.s5.2.7.7.80.10.50.1000.135.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  135  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41375770--41375887	59	2.0	59	100	0	236	23	25	23	27	2.00
41379716--41379753	19	2.0	19	100	0	76	47	0	0	52	1.00
41380228--41380269	21	2.0	21	90	0	66	45	0	14	40	1.45
41385966--41386078	25	4.6	25	77	7	97	32	19	28	19	1.96
41389020--41389066	22	2.2	22	85	14	64	55	2	0	42	1.12
41396752--41396826	34	2.2	34	97	0	141	28	20	14	37	1.92
41402586--41402629	23	1.9	23	90	9	72	45	13	15	25	1.83
41411622--41411671	21	2.3	22	80	16	59	30	0	2	68	1.01
41411797--41411835	17	2.2	18	86	13	55	12	7	10	69	1.37
41415311--41415345	17	2.1	17	89	10	54	82	2	0	14	0.77
41421653--41421722	6	10.5	6	75	18	50	38	0	2	58	1.13
41421652--41421702	15	3.6	15	76	10	54	37	0	3	58	1.16
41422839--41422940	17	5.7	17	69	17	64	61	0	2	34	1.17
41422842--41422912	20	3.8	20	75	7	60	60	1	2	35	1.20
41422842--41423035	9	21.3	9	68	21	86	61	1	1	35	1.14
41422894--41422954	26	2.3	26	80	0	68	62	1	1	34	1.15
41422949--41423029	19	4.4	19	75	10	71	61	1	0	37	1.04
41422969--41423035	17	3.8	17	76	6	62	67	1	0	31	1.00
41423422--41423556	58	2.4	55	80	6	135	35	2	5	55	1.39
41423527--41423565	20	2.0	20	85	5	53	38	2	0	58	1.12
41428297--41428511	21	10.3	21	77	5	177	16	20	16	46	1.84
41428296--41428494	84	2.4	83	82	6	224	17	20	15	46	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41428963--41429022	25	2.3	26	78	16	63	21	10	26	41	1.85
41430885--41430927	21	2.0	21	86	0	59	39	16	0	44	1.48
41441267--41441452	77	2.4	77	82	1	212	46	9	10	33	1.69
41441267--41441476	77	2.7	76	80	3	206	46	9	9	35	1.68
41453805--41453865	28	2.2	28	78	0	68	31	11	6	50	1.64
41460002--41460028	2	13.5	2	100	0	54	0	51	0	48	1.00
41465177--41465207	10	3.2	10	90	9	55	38	12	9	38	1.77
41472024--41472075	24	2.2	24	89	0	77	55	9	1	32	1.43
41473994--41474045	24	2.2	24	89	0	77	55	9	1	32	1.43
41477026--41477066	21	2.0	21	90	0	64	73	9	7	9	1.26
41478352--41478405	20	2.7	20	82	5	65	53	5	0	40	1.24
41478356--41478422	19	3.5	20	76	15	70	52	5	0	41	1.26
41482239--41482276	2	19.5	2	94	5	69	0	50	0	50	1.00
41482795--41482851	16	3.6	16	78	0	60	21	17	49	12	1.79
41499800--41499838	18	2.2	17	86	13	53	46	20	0	33	1.51
41504317--41504351	15	2.4	15	90	4	54	48	0	8	42	1.33
41507225--41507277	26	2.1	25	85	3	70	35	22	18	22	1.95
41509951--41509992	22	1.9	22	85	0	57	35	21	16	26	1.94
41514445--41514482	18	2.1	18	85	9	51	36	0	0	63	0.95
41515812--41515872	30	2.0	31	90	3	97	36	0	44	19	1.51
41515921--41515957	9	4.1	9	89	0	56	29	8	13	48	1.71
41521771--41521853	41	2.0	41	100	0	166	22	4	16	55	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41525984--41526030	7	6.7	7	88	7	60	29	4	0	65	1.11
41530696--41530742	21	2.2	22	92	3	78	21	38	19	21	1.94
41537321--41537358	18	2.1	18	85	9	51	15	15	7	60	1.57
41537346--41537476	12	10.2	12	71	11	64	27	14	8	49	1.72
41537389--41537468	25	3.2	25	80	7	74	27	15	10	47	1.77
41539037--41539095	9	6.4	9	79	11	57	42	23	10	23	1.85
41539470--41539917	246	1.8	246	98	0	869	40	6	16	36	1.74
41541843--41541869	14	1.9	14	100	0	54	48	0	22	29	1.51
41543824--41543858	18	1.9	18	88	0	52	42	11	11	34	1.77
41548091--41548761	342	2.0	343	94	0	1182	30	8	21	40	1.83
41550522--41550565	23	1.9	23	86	9	63	50	13	6	29	1.68
41550546--41550665	49	2.5	48	73	16	111	53	12	7	26	1.65
41550640--41550673	14	2.4	14	90	0	50	64	5	5	23	1.38
41551637--41551767	33	4.0	33	88	0	190	19	23	16	40	1.91
41559032--41559081	27	1.9	26	88	8	75	60	4	2	34	1.27
41563435--41563461	14	1.9	14	100	0	54	7	25	0	66	1.17
41564346--41564920	287	2.0	287	100	0	1150	27	17	18	37	1.92
41574589--41574614	13	2.0	13	100	0	52	23	7	0	69	1.14
41574590--41574643	16	3.6	15	79	18	51	31	5	0	62	1.18
41576089--41576291	41	5.0	41	87	7	268	33	28	18	19	1.96
41576941--41576975	17	2.1	17	89	5	54	31	14	5	48	1.67
41597817--41597873	25	2.3	25	84	0	69	40	12	5	42	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41598111--41598202	23	3.9	23	80	15	98	29	20	27	22	1.99
41606017--41606135	53	2.3	49	83	8	114	21	10	4	63	1.43
41605966--41606135	54	3.3	49	77	14	132	22	11	3	62	1.43
41606494--41606538	20	2.2	20	88	0	63	42	2	6	48	1.41
41606491--41606530	20	2.0	20	95	0	71	42	0	7	50	1.30
41607517--41607557	10	4.1	10	77	22	50	31	17	0	51	1.46
41610232--41610288	24	2.4	24	82	5	62	35	0	8	56	1.31
41622844--41622881	8	4.6	8	93	3	58	65	0	7	26	1.19
41622843--41622887	16	2.6	17	82	10	65	62	0	8	28	1.25
41623709--41623766	22	2.6	22	84	7	73	43	17	3	36	1.66
41623722--41623819	19	4.8	19	83	9	115	39	16	7	36	1.76
41623756--41623818	21	3.1	21	88	9	103	39	14	7	38	1.75
41625390--41625432	18	2.3	19	84	15	54	41	0	4	53	1.21
41627733--41628108	189	2.0	189	97	1	711	25	10	28	36	1.88
41629195--41629224	13	2.3	13	94	0	51	80	6	3	10	1.01
41639887--41640128	126	1.9	125	94	0	421	29	15	22	32	1.95
41641515--41641551	7	5.4	7	84	15	51	67	0	0	32	0.91
41643772--41643798	4	6.8	4	100	0	54	25	0	22	51	1.48
41643703--41643792	47	1.9	46	84	6	119	48	1	12	37	1.48
41643824--41643894	8	9.1	8	76	11	58	53	1	8	36	1.40
41643831--41643907	10	7.2	11	75	12	63	57	1	5	36	1.30
41643844--41643905	22	2.9	22	92	4	101	59	0	6	33	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41643817--41643907	30	2.9	31	81	12	96	56	1	7	35	1.35
41645592--41646166	46	12.5	46	87	2	757	28	26	16	27	1.97
41647258--41647371	43	2.6	44	80	6	126	25	28	14	30	1.95
41649274--41649310	17	2.1	18	90	5	58	45	0	24	29	1.53
41653387--41653417	4	7.8	4	92	0	53	25	0	19	54	1.44
41653387--41653417	16	1.9	16	100	0	62	25	0	19	54	1.44
41653461--41653500	22	1.9	20	90	10	62	62	0	5	32	1.17
41656630--41656686	11	4.8	11	75	23	53	64	1	1	31	1.13
41656658--41656691	14	2.4	14	100	0	68	61	0	0	38	0.96
41656487--41656949	230	2.0	230	100	0	926	42	12	8	35	1.74
41656860--41656916	11	4.8	11	75	23	53	64	1	1	31	1.13
41656888--41656921	14	2.4	14	100	0	68	61	0	0	38	0.96
41657791--41657831	20	2.1	20	86	4	57	60	2	2	34	1.23
41658142--41658221	30	2.6	30	79	13	83	37	6	0	56	1.25
41661412--41661471	29	2.0	29	81	9	68	23	16	20	40	1.91
41662653--41662708	29	1.9	29	85	0	76	28	14	19	37	1.91
41662650--41662713	29	2.2	28	78	5	74	28	15	17	39	1.90
41666288--41666347	27	2.2	27	93	0	102	43	11	5	40	1.63
41666406--41666916	28	18.5	28	82	8	561	30	1	22	45	1.62
41667031--41667997	28	35.1	28	78	13	863	30	1	22	46	1.59
41667297--41667978	29	25.7	23	77	18	428	30	0	22	46	1.58
41667038--41667997	109	8.7	109	85	8	1088	30	1	22	46	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41667881--41667978	23	4.0	21	85	12	70	29	0	24	45	1.53
41670142--41670175	15	2.3	15	90	5	52	67	5	0	26	1.13
41670373--41670414	22	1.9	22	90	0	66	33	0	33	33	1.58
41670386--41670444	30	2.0	30	93	0	100	33	0	35	30	1.58
41670364--41670466	52	2.0	51	85	9	138	34	0	33	32	1.58
41670416--41670506	22	4.1	22	83	10	123	39	0	29	30	1.57
41670416--41670506	44	2.1	44	89	4	139	39	0	29	30	1.57
41680039--41680190	37	3.9	37	81	13	173	26	21	15	36	1.94
41680107--41680375	46	5.6	46	84	10	340	28	22	14	34	1.93
41680150--41680369	52	4.3	52	85	8	299	27	22	14	35	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185