genome.fa.s5.2.7.7.80.10.50.1000.41.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  41  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12015315--12015512	43	4.7	42	77	10	197	34	26	17	21	1.95
12015490--12015565	26	2.9	26	100	0	152	30	34	19	15	1.93
12020377--12020467	48	1.9	47	86	6	130	37	24	16	21	1.94
12020438--12020489	21	2.4	22	84	9	63	44	25	9	21	1.82
12021357--12021416	30	2.0	30	93	0	102	55	16	6	21	1.64
12028600--12028644	21	2.0	22	83	8	56	73	4	15	6	1.21
12033363--12033432	35	2.0	35	94	0	122	27	15	11	45	1.80
12036713--12036907	50	3.9	50	79	4	180	23	26	22	28	1.99
12039868--12039901	16	2.3	15	90	10	52	29	20	5	44	1.75
12044004--12044040	18	2.0	19	89	5	58	75	2	16	5	1.10
12051774--12051926	50	2.9	50	84	5	180	25	18	30	24	1.98
12052201--12052239	20	2.0	20	90	10	62	56	5	23	15	1.59
12053774--12053838	25	2.6	25	90	0	94	29	20	23	27	1.98
12075190--12075243	22	2.5	21	82	14	65	29	3	0	66	1.09
12075197--12075243	23	2.1	22	88	11	69	31	4	0	63	1.13
12075190--12075248	23	2.8	21	78	16	59	30	3	0	66	1.08
12077660--12077836	50	3.5	51	71	8	164	24	19	22	33	1.97
12077974--12078614	44	14.1	44	74	10	349	26	20	20	32	1.97
12077913--12078605	142	5.0	141	83	5	750	26	20	20	32	1.97
12078248--12078626	88	4.3	88	97	1	690	25	21	21	31	1.98
12113810--12113848	20	2.0	20	84	0	51	17	0	35	46	1.49
12124087--12124121	15	2.3	15	90	0	52	28	8	0	62	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12140776--12140976	51	4.0	51	78	5	228	30	27	16	24	1.97
12140776--12140971	102	1.9	102	84	3	261	31	27	17	24	1.97
12140776--12141006	101	2.3	102	78	6	247	30	27	16	25	1.97
12145901--12145982	38	2.2	38	84	6	105	9	39	8	42	1.68
12147867--12147905	12	3.2	12	85	0	51	20	23	5	51	1.67
12148174--12148343	50	3.4	50	89	4	254	20	28	22	27	1.99
12151575--12151643	29	2.4	29	85	4	86	26	4	10	59	1.48
12151988--12152023	10	3.6	10	85	14	56	19	5	0	75	1.00
12151988--12152049	20	3.2	20	80	11	74	25	4	1	67	1.19
12152047--12152099	22	2.4	22	81	12	56	49	1	1	47	1.23
12156312--12156368	12	4.8	12	77	0	51	8	17	5	68	1.35
12156311--12156375	18	3.6	18	74	0	67	7	16	6	69	1.33
12157292--12157345	17	3.3	17	80	12	60	12	9	3	74	1.20
12162372--12162518	73	2.0	73	97	0	276	32	15	17	34	1.92
12162844--12162951	20	5.4	20	74	4	101	12	23	21	43	1.85
12162846--12162981	40	3.4	40	82	2	157	11	24	20	44	1.84
12178135--12178243	33	3.5	32	81	14	138	32	28	22	16	1.96
12178191--12178397	76	2.8	74	85	7	251	33	27	17	22	1.96
12184493--12184645	40	3.8	40	81	3	182	20	26	16	35	1.94
12184493--12184647	80	1.9	80	88	0	229	21	25	16	36	1.94
12184493--12184673	40	4.5	40	75	5	132	20	27	16	35	1.93
12185781--12185942	81	2.0	81	98	0	315	22	12	27	37	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12199072--12199133	27	2.3	27	83	10	74	43	19	17	19	1.88
12207344--12207507	82	2.0	82	93	0	283	28	5	23	42	1.76
12208164--12208348	51	3.6	51	79	3	171	24	16	26	32	1.96
12215006--12215250	135	1.8	135	80	2	294	33	25	20	20	1.97
12222628--12222701	36	2.1	36	97	0	139	21	33	17	27	1.96
12226367--12226404	19	2.0	19	94	0	67	34	10	23	31	1.89
12227290--12227329	19	2.0	20	86	13	57	77	2	2	17	0.99
12227569--12227612	9	4.8	9	86	5	61	4	9	0	86	0.70
12227569--12227619	9	5.7	9	84	9	59	5	7	0	86	0.71
12227915--12228363	44	10.4	44	89	3	689	22	32	17	27	1.96
12227915--12228377	128	3.6	129	88	5	670	22	32	17	28	1.96
12227936--12228363	172	2.5	172	93	0	732	21	33	17	27	1.96
12227936--12228462	172	3.1	170	86	6	665	22	31	17	27	1.96
12228325--12228545	88	2.5	88	91	0	354	28	28	16	26	1.97
12228356--12228493	41	3.2	41	65	22	102	32	26	15	24	1.96
12228658--12228780	61	2.0	64	87	7	182	39	12	15	33	1.84
12233119--12233182	24	2.7	24	92	0	101	39	29	14	17	1.88
12233119--12233194	24	3.2	23	85	10	91	38	31	13	17	1.88
12240718--12240803	12	7.1	13	64	15	58	39	29	12	18	1.88
12240696--12240807	24	4.7	24	94	0	188	39	29	13	17	1.88
12241011--12241072	12	5.1	13	66	15	51	38	29	12	19	1.89
12240919--12241076	24	6.7	24	76	4	169	37	28	13	20	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12242128--12242298	85	2.0	85	95	0	306	41	15	8	34	1.78
12258308--12258610	115	2.7	110	78	12	294	26	8	17	47	1.76
12258268--12258614	112	3.1	112	76	11	332	27	7	19	45	1.77
12258906--12258952	15	2.9	16	78	6	51	27	4	4	63	1.31
12268691--12268723	14	2.4	14	85	14	50	24	12	36	27	1.91
12272719--12272836	31	3.9	31	77	10	136	45	9	19	25	1.80
12272761--12272814	28	2.0	27	88	3	81	53	7	14	24	1.66
12272833--12272858	12	2.2	12	100	0	52	53	0	0	46	1.00
12273802--12273858	30	1.9	29	89	10	89	31	0	28	40	1.57
12274145--12274310	49	3.4	49	92	2	271	24	1	12	61	1.41
12274188--12274257	16	4.3	16	66	16	54	27	1	10	61	1.36
12274367--12274419	26	2.0	27	88	3	81	33	3	28	33	1.75
12275925--12275959	14	2.5	14	95	0	61	31	14	8	45	1.75
12276573--12276637	24	2.7	24	74	11	62	26	35	26	12	1.91
12276773--12276838	33	2.0	33	93	0	114	18	42	10	28	1.83
12277093--12277299	49	4.3	49	88	2	269	44	13	11	30	1.79
12280761--12280946	51	3.7	49	81	6	205	23	17	27	30	1.97
12280952--12281036	46	1.9	43	83	11	109	22	16	25	35	1.95
12281175--12281210	16	2.3	16	90	4	56	58	0	16	25	1.38
12301928--12301958	9	3.4	9	90	0	53	25	12	22	38	1.90
12302011--12302047	9	4.1	9	89	0	56	48	10	10	29	1.72
12321507--12321637	49	2.7	49	79	3	138	26	23	19	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12321570--12321739	50	3.4	50	78	3	173	21	29	21	27	1.99
12325793--12325922	48	2.7	49	82	7	176	21	17	26	34	1.96
12337635--12337675	18	2.3	18	88	12	59	36	0	19	43	1.51
12337899--12337951	23	2.3	23	90	6	81	26	18	24	30	1.98
12347196--12347243	22	2.3	20	89	7	69	47	0	0	52	1.00
12351090--12351140	14	3.6	14	83	2	57	50	9	0	39	1.35
12368817--12368874	29	2.0	29	80	12	66	24	6	24	44	1.77
12368968--12368992	2	12.5	2	100	0	50	52	0	0	48	1.00
12370996--12371075	16	5.1	16	70	13	58	47	2	0	50	1.14
12371022--12371065	12	3.5	13	80	20	58	47	0	0	52	1.00
12371019--12371065	25	2.0	23	91	8	76	48	0	0	51	1.00
12372068--12372092	5	5.0	5	100	0	50	20	0	0	80	0.72
12373472--12373507	18	1.9	19	94	5	65	2	16	5	75	1.12
12373697--12373767	34	2.1	34	86	5	99	19	4	25	50	1.65
12374831--12374860	15	2.0	15	93	0	51	36	0	20	43	1.52
12382953--12383221	40	6.7	40	83	0	297	20	32	15	31	1.94
12384894--12384932	9	4.3	9	93	0	69	35	10	12	41	1.77
12385178--12385342	81	2.0	81	100	0	330	24	18	19	37	1.94
12393324--12393369	20	2.3	20	84	0	65	26	4	21	47	1.69
12393324--12393402	25	3.2	25	80	3	79	29	7	20	43	1.79
12393361--12393415	25	2.2	25	77	6	58	34	7	20	38	1.80
12402189--12402723	265	2.0	265	93	1	912	28	17	15	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12416072--12416132	23	2.7	23	74	5	61	47	1	0	50	1.10
12416141--12416196	25	2.3	25	90	6	89	53	7	0	39	1.28
12416205--12416239	18	2.0	18	88	5	54	48	5	0	45	1.26
12424835--12425001	85	2.0	84	82	4	201	40	19	7	32	1.80
12425009--12425073	28	2.3	27	79	12	69	64	0	6	29	1.17
12425050--12425123	37	2.0	37	86	2	103	67	2	4	25	1.21
12425302--12425396	28	3.3	28	73	10	84	32	5	2	60	1.31
12425413--12425521	25	4.0	27	71	15	98	32	1	3	62	1.23
12425529--12425702	88	2.0	90	88	4	264	36	9	20	33	1.85
12427936--12428004	36	1.9	36	85	5	95	60	5	24	8	1.48

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185