genome.fa.s5.2.7.7.80.10.50.1000.178.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  178  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54055128--54055153	12	2.2	12	100	0	52	30	0	0	69	0.89
54055760--54055813	27	2.0	27	85	7	74	33	5	27	33	1.80
54057394--54057439	16	2.6	17	80	19	51	45	0	32	21	1.52
54057794--54057830	9	4.1	9	92	0	65	29	10	13	45	1.77
54059326--54059425	48	2.1	48	94	0	173	48	11	10	31	1.71
54059363--54059487	62	2.0	62	84	6	164	48	8	7	35	1.62
54062561--54062618	31	1.9	31	92	3	100	15	6	13	63	1.49
54063949--54063992	23	2.0	22	86	4	61	29	0	4	65	1.12
54066098--54066152	24	2.3	24	87	0	74	16	29	25	29	1.97
54066108--54066161	24	2.2	24	83	0	63	18	25	27	27	1.98
54066535--54066571	15	2.4	17	82	17	53	56	0	10	32	1.34
54081910--54081948	18	2.1	18	85	9	51	30	5	5	58	1.41
54107147--54107291	41	3.6	41	83	0	175	28	20	27	23	1.99
54113838--54113982	41	3.6	41	83	0	175	28	20	27	23	1.99
54114744--54114781	18	2.1	18	95	0	67	23	21	0	55	1.44
54116705--54116969	103	2.6	104	91	3	426	29	30	20	19	1.97
54117297--54117361	30	2.2	29	81	8	76	30	27	6	35	1.81
54117304--54117361	30	1.9	30	85	0	80	31	24	6	37	1.82
54119659--54119695	19	1.9	19	88	0	56	24	40	21	13	1.89
54119826--54119858	10	3.0	11	86	13	50	18	36	0	45	1.49
54119870--54119956	29	3.2	29	64	21	80	31	25	0	43	1.55
54119841--54119963	51	2.4	51	94	1	212	28	26	0	45	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54122699--54122809	36	3.0	36	90	5	177	38	10	19	30	1.86
54124236--54124297	23	2.7	23	92	0	106	45	20	0	33	1.52
54127346--54127687	123	2.8	122	85	5	474	33	22	15	28	1.94
54136436--54136469	17	2.0	17	94	0	59	44	5	0	50	1.26
54136436--54136474	17	2.4	16	87	8	53	43	5	0	51	1.24
54136440--54136479	17	2.3	18	83	12	57	47	5	0	47	1.24
54136524--54136731	91	2.3	91	94	0	362	46	2	3	47	1.35
54136556--54136699	47	3.1	47	70	16	147	44	1	3	50	1.27
54136881--54136922	15	2.7	16	82	14	52	45	0	2	52	1.13
54136872--54136913	15	2.9	15	82	10	52	47	0	0	52	1.00
54137136--54137173	16	2.4	16	90	0	58	34	34	0	31	1.58
54137574--54137621	15	3.2	15	80	13	55	52	8	2	37	1.44
54139078--54139124	21	2.4	19	82	7	58	36	10	0	53	1.36
54139238--54139267	11	2.7	11	89	0	51	0	10	0	90	0.47
54140602--54140651	19	2.7	20	81	12	61	38	0	0	62	0.96
54147955--54147997	21	2.0	21	100	0	86	46	4	9	39	1.57
54151146--54151174	14	2.1	14	100	0	58	13	44	6	34	1.71
54152372--54152406	15	2.2	16	90	5	54	48	11	2	37	1.54
54179513--54179578	31	2.2	30	83	2	78	42	13	12	31	1.81
54181216--54181287	30	2.5	30	78	13	87	52	2	12	31	1.53
54182396--54182456	29	2.1	29	84	6	79	44	6	1	47	1.39
54186255--54186312	29	1.9	31	89	6	93	65	5	5	24	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54186700--54186933	113	2.1	111	81	8	269	21	22	24	31	1.98
54187256--54187312	28	2.0	28	100	0	114	47	10	7	35	1.65
54187295--54187343	18	2.5	21	80	9	59	61	10	2	26	1.39
54187609--54187639	15	2.0	16	93	6	55	16	0	45	38	1.47
54187931--54188009	21	3.8	21	70	6	70	10	0	43	46	1.37
54188418--54188934	230	2.2	230	89	1	777	28	18	20	33	1.96
54189264--54189307	19	2.3	19	84	0	61	31	43	2	22	1.66
54191324--54192878	37	40.9	39	65	18	289	45	10	5	38	1.61
54191343--54191470	57	2.3	56	86	4	168	46	10	3	39	1.56
54191504--54193083	115	13.9	115	95	1	1984	45	10	5	38	1.62
54192502--54192531	9	3.3	9	90	0	51	46	16	0	36	1.47
54192614--54192643	9	3.3	9	90	0	51	46	16	0	36	1.47
54192839--54192868	9	3.3	9	90	0	51	46	16	0	36	1.47
54192951--54192980	9	3.3	9	90	0	51	46	16	0	36	1.47
54193063--54193403	9	39.1	9	73	10	280	44	20	1	33	1.62
54193056--54193341	104	2.8	104	94	1	484	44	19	2	34	1.62
54195348--54195418	21	3.4	21	86	0	97	29	18	47	4	1.67
54195778--54195976	42	4.7	42	86	3	276	23	19	23	34	1.96
54204339--54204367	10	2.7	11	94	5	51	41	0	20	37	1.53
54204685--54204737	25	2.2	25	82	3	63	22	30	18	28	1.98
54204842--54204960	24	4.8	24	75	11	78	18	29	19	32	1.96
54205974--54206039	7	8.6	7	76	18	53	43	1	1	53	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54205977--54206042	8	8.4	8	73	18	50	45	1	1	51	1.19
54205974--54206042	27	2.5	26	76	23	79	44	1	1	52	1.19
54205984--54206052	32	2.2	32	79	7	79	47	1	2	47	1.25
54206122--54206158	13	2.9	14	88	11	53	72	0	27	0	0.84
54206122--54206158	14	2.9	13	85	14	51	72	0	27	0	0.84
54208711--54208763	25	2.1	25	85	0	70	18	26	18	35	1.95
54208768--54208810	22	2.0	22	86	9	61	16	25	18	39	1.91
54211771--54211842	21	3.4	21	69	7	65	44	15	26	13	1.84
54211757--54211858	42	2.4	42	81	0	132	41	16	26	15	1.88
54220795--54220844	18	2.7	19	72	12	59	28	2	2	68	1.12
54221702--54221751	22	2.4	21	87	12	68	24	8	0	68	1.16
54221702--54221757	21	2.7	20	84	13	69	23	10	0	66	1.23
54231612--54231696	33	2.6	33	92	5	138	68	4	17	9	1.35
54232338--54232378	5	8.2	5	100	0	82	39	0	0	60	0.96
54249406--54249439	17	2.0	17	100	0	68	11	47	17	23	1.81
54257042--54257097	5	10.8	5	84	7	76	41	0	0	58	0.98
54257045--54257102	8	7.0	8	77	14	64	41	0	0	58	0.98
54257042--54257106	21	3.0	21	97	2	121	41	0	0	58	0.98
54257355--54257386	12	2.6	13	85	14	50	34	0	25	40	1.56
54257884--54257916	11	3.1	11	82	8	50	78	0	3	18	0.87
54258217--54258274	25	2.3	25	88	5	82	15	24	22	37	1.93
54264208--54264267	26	2.3	26	85	0	84	40	21	20	18	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54264559--54264598	22	2.0	20	85	14	55	50	15	0	35	1.44
54266833--54266872	21	2.0	20	85	5	53	47	2	22	27	1.64
54270975--54271020	17	2.6	17	86	13	58	21	4	4	69	1.24
54276284--54276317	17	2.0	17	94	0	59	44	50	0	5	1.26
54280924--54280957	17	2.0	17	94	0	59	44	50	0	5	1.26
54283325--54283865	92	5.9	91	73	10	282	28	7	14	49	1.71
54283925--54284098	80	2.2	80	82	6	210	24	9	15	50	1.74
54283958--54284114	80	2.0	80	80	7	176	24	11	14	49	1.76
54284166--54284366	90	2.2	88	81	14	234	27	5	12	54	1.60
54306721--54306772	23	2.3	22	75	21	54	9	23	1	65	1.32
54306766--54306804	18	2.2	18	85	0	51	12	23	2	61	1.43
54310550--54310601	23	2.3	22	75	21	54	9	23	1	65	1.32
54310595--54310633	18	2.2	18	85	0	51	12	23	2	61	1.43
54314379--54314430	23	2.3	22	75	21	54	9	23	1	65	1.32
54314424--54314462	18	2.2	18	85	0	51	12	23	2	61	1.43
54318208--54318259	23	2.3	22	75	21	54	9	23	1	65	1.32
54318253--54318291	18	2.2	18	85	0	51	12	23	2	61	1.43
54322037--54322088	23	2.3	22	75	21	54	9	23	1	65	1.32
54322082--54322120	18	2.2	18	85	0	51	12	23	2	61	1.43
54336759--54336932	48	3.6	48	83	1	224	27	18	29	24	1.98
54341281--54341404	50	2.5	51	91	1	196	34	17	22	25	1.96
54341382--54341497	31	3.7	31	81	0	142	26	18	26	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54341566--54341738	48	3.7	47	89	7	259	27	15	27	29	1.96
54341611--54341756	42	3.3	42	84	9	161	29	14	27	28	1.95
54341662--54341772	42	2.7	41	85	5	134	32	15	24	27	1.95
54342590--54342752	75	2.2	75	88	0	236	25	20	28	25	1.99
54344949--54345178	40	5.8	40	86	5	268	25	27	21	25	1.99
54345110--54345187	40	1.9	41	82	10	97	26	28	20	24	1.99
54362502--54362708	53	3.8	53	76	3	198	38	17	23	20	1.93
54388550--54388617	29	2.3	29	85	5	93	27	30	13	27	1.94
54388719--54388797	29	2.7	30	82	13	110	29	30	15	25	1.96
54396017--54396271	44	5.6	43	71	14	118	28	17	19	34	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185