genome.fa.s5.2.7.7.80.10.50.1000.169.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  169  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50740318--50740397	33	2.4	32	75	18	76	38	6	2	52	1.40
50744209--50744255	19	2.5	19	76	10	51	72	4	2	21	1.12
50748369--50748398	14	2.1	14	100	0	60	36	0	36	26	1.57
50748499--50748528	14	2.1	14	100	0	60	13	0	40	46	1.43
50748557--50748590	13	2.6	13	95	0	59	26	0	38	35	1.57
50749958--50749998	21	1.9	22	90	5	66	17	0	34	48	1.47
50749959--50750074	54	2.2	53	80	3	133	17	0	32	50	1.46
50750085--50750203	41	2.9	41	92	0	193	17	24	24	33	1.96
50752388--50752412	11	2.3	11	100	0	50	48	8	12	32	1.69
50757395--50757438	21	2.1	21	100	0	88	45	13	9	31	1.75
50759707--50759771	17	3.6	17	73	17	60	40	1	1	56	1.18
50759609--50759739	62	2.1	63	81	7	160	39	6	3	49	1.48
50760029--50760068	20	2.0	21	85	5	55	37	2	0	60	1.11
50763214--50763252	21	1.9	20	89	5	60	53	5	0	41	1.23
50774610--50774645	16	2.2	17	90	5	56	16	25	0	58	1.38
50778836--50778860	3	8.3	3	100	0	50	68	0	0	32	0.90
50779592--50779625	17	1.9	18	94	5	61	70	2	0	26	1.01
50780197--50780250	16	3.5	16	69	16	51	50	1	5	42	1.36
50781603--50781653	18	2.8	18	87	0	84	37	11	15	35	1.84
50781586--50781681	18	5.4	18	77	7	79	38	11	14	35	1.82
50785497--50785536	21	1.9	21	84	0	53	50	10	2	37	1.50
50786782--50786808	3	9.0	3	100	0	54	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50787280--50787483	99	2.1	99	96	0	372	32	11	17	39	1.85
50795946--50796183	51	4.8	51	80	13	314	52	2	15	29	1.57
50796032--50796215	97	1.9	97	100	0	368	54	2	12	30	1.52
50797098--50797154	5	11.0	5	85	10	71	78	1	0	19	0.83
50797102--50797156	23	2.3	23	87	9	76	78	1	0	20	0.85
50797092--50797154	33	1.9	33	90	6	101	76	1	0	22	0.88
50797092--50797156	18	3.6	17	75	20	60	75	1	0	23	0.89
50802061--50802103	9	4.7	9	77	5	50	46	30	0	23	1.52
50804251--50804338	24	3.7	24	96	0	158	19	13	31	35	1.91
50804251--50804356	24	4.4	24	87	2	97	20	13	31	34	1.91
50804251--50804356	48	2.2	48	86	0	140	20	13	31	34	1.91
50804736--50804867	69	1.9	70	88	1	203	31	11	18	38	1.86
50805023--50805208	39	4.7	39	86	1	246	20	24	26	28	1.99
50805021--50805191	79	2.2	79	83	1	227	22	23	25	28	1.99
50805023--50805245	118	1.9	118	84	0	302	20	23	26	29	1.99
50805021--50805254	39	5.9	39	82	2	137	20	22	26	30	1.98
50807516--50807560	18	2.4	19	85	14	58	37	0	2	60	1.09
50809992--50810052	17	3.4	17	65	12	50	31	3	13	52	1.56
50809987--50810092	37	2.9	37	94	0	185	33	4	14	47	1.65
50810029--50810089	17	3.4	17	68	12	50	34	3	11	50	1.55
50810102--50810168	9	7.4	9	87	0	98	25	13	20	40	1.89
50813576--50813647	37	1.9	37	81	15	87	40	16	1	41	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50813650--50813682	3	11.0	3	100	0	66	66	0	0	33	0.92
50814253--50814360	54	2.0	54	98	0	207	27	28	3	39	1.74
50817235--50817383	52	2.9	49	78	14	149	29	25	18	26	1.98
50817990--50818059	35	2.0	35	100	0	140	31	25	5	37	1.80
50827683--50827748	33	2.0	33	96	0	123	28	12	12	46	1.77
50831742--50831782	18	2.3	18	88	12	59	70	4	14	9	1.30
50840870--50840894	5	5.0	5	100	0	50	20	0	0	80	0.72
50841308--50841358	18	2.8	18	80	11	52	3	13	0	82	0.81
50841313--50841359	24	1.9	25	86	4	69	4	10	0	85	0.74
50852142--50852176	12	2.8	12	86	4	52	68	2	5	22	1.24
50853752--50853891	52	2.7	52	79	7	158	25	16	28	30	1.97
50871744--50871769	5	5.2	5	100	0	52	80	0	0	19	0.71
50885985--50886056	29	2.5	29	97	0	135	52	13	9	23	1.70
50887077--50887103	11	2.5	11	100	0	54	29	11	25	33	1.91
50892275--50892318	23	2.0	22	86	4	61	43	0	0	56	0.99
50892319--50892369	25	2.2	23	83	13	61	47	0	5	47	1.26
50893618--50893661	19	2.3	19	84	0	52	45	0	0	54	0.99
50893635--50893675	19	2.2	18	87	12	57	48	2	0	48	1.14
50893628--50893695	28	2.4	27	80	7	82	51	2	0	45	1.16
50897894--50897923	4	7.5	4	100	0	60	50	26	0	23	1.50
50908024--50908057	18	1.9	17	88	5	50	20	5	0	73	1.04
50916639--50916690	22	2.3	23	74	6	54	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50920324--50920401	15	5.2	15	67	11	61	44	7	21	25	1.79
50920320--50920401	30	2.7	30	94	0	137	46	7	21	24	1.77
50924987--50925064	15	5.2	15	70	11	70	43	7	23	25	1.80
50924980--50925064	30	2.8	30	96	0	152	44	7	23	24	1.78
50926054--50926100	3	16.0	3	91	4	78	70	0	0	29	0.88
50928911--50929184	46	6.0	46	93	0	433	22	23	14	39	1.91
50930794--50930836	11	3.7	11	82	11	50	60	2	0	37	1.10
50930799--50930877	30	2.6	30	75	13	72	54	5	0	40	1.22
50936177--50936303	50	2.5	51	91	3	195	27	22	14	36	1.92
50938632--50938810	90	2.0	90	98	0	349	50	7	12	29	1.67
50938861--50938928	15	4.4	15	74	18	59	45	0	1	52	1.09
50938947--50938983	16	2.3	16	86	13	58	40	0	0	59	0.97
50945060--50945104	17	2.6	18	89	10	67	33	0	2	64	1.06
50946434--50946471	20	1.9	20	88	0	58	47	10	2	39	1.52
50947751--50947869	60	2.0	60	90	3	186	52	13	0	33	1.47
50949790--50949845	27	2.1	27	100	0	112	35	10	10	42	1.74
50963852--50963898	25	2.0	25	83	8	62	27	14	4	53	1.60
50966807--50967246	206	2.1	206	97	0	844	32	17	22	27	1.96
50967334--50967430	45	2.2	46	84	5	135	29	14	29	25	1.95
50967615--50967660	15	3.0	15	83	3	56	50	36	6	6	1.54
50967742--50967799	13	4.8	13	75	16	61	37	50	0	12	1.40
50967755--50967810	22	2.5	22	85	5	78	35	50	0	14	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50968172--50968213	19	2.3	18	87	4	57	26	2	2	69	1.13
50971160--50971222	18	3.0	23	74	21	59	52	0	1	46	1.10
50971189--50971223	18	1.9	18	100	0	70	60	0	0	40	0.97
50973734--50973820	26	3.2	26	71	9	84	29	1	9	59	1.36
50974119--50974175	15	3.7	15	80	2	60	28	8	1	61	1.36
50984060--50984105	24	1.9	24	81	0	56	52	4	0	43	1.21
50985176--50985395	41	5.4	41	91	2	327	34	22	21	20	1.97
50985793--50985844	25	2.1	25	96	0	95	28	7	21	42	1.80
50988063--50988278	43	5.0	44	83	6	287	26	20	24	28	1.99
50988063--50988278	87	2.5	87	95	0	387	26	20	24	28	1.99
50989174--50989219	25	1.9	23	86	8	65	63	6	0	30	1.20
50989323--50989351	12	2.5	12	94	5	51	58	6	6	27	1.50
50989437--50989463	10	2.7	10	100	0	54	66	0	0	33	0.92
50990962--50991075	42	2.7	42	84	2	131	15	22	15	45	1.84
50990998--50991092	21	4.7	21	85	3	124	13	23	20	43	1.87
50993159--50993187	13	2.1	14	93	6	51	51	0	3	44	1.18
50994159--50994200	19	2.2	19	83	8	50	33	4	2	59	1.31
50996724--50996781	30	1.9	29	82	6	71	31	1	1	65	1.13
50997294--50997365	24	3.0	25	95	4	130	73	19	2	4	1.12
51009830--51009897	18	3.9	18	75	14	79	73	19	2	4	1.13
51009830--51009897	17	3.9	17	74	11	75	73	19	2	4	1.13
51011481--51011519	12	3.2	12	92	7	62	74	10	0	15	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51014616--51014697	37	2.2	37	78	8	87	42	2	0	54	1.13
51014632--51014682	18	2.6	19	82	17	61	31	3	0	64	1.11
51014632--51014694	17	3.4	18	75	23	60	34	3	0	61	1.12
51014800--51014847	21	2.3	21	81	0	60	39	14	14	31	1.86
51024028--51024076	23	2.2	23	88	3	73	48	2	0	48	1.12
51025406--51025438	12	2.8	12	95	0	57	60	0	0	39	0.97
51026909--51026948	20	2.0	20	85	9	55	67	0	25	7	1.16
51028050--51028107	17	3.1	19	79	20	77	50	6	1	41	1.39
51028052--51028108	20	3.0	20	78	21	77	47	7	1	43	1.40
51028058--51028153	17	5.6	17	67	22	58	53	4	3	39	1.36

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185