genome.fa.s5.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  11  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3044472--3044579	29	3.7	28	82	7	135	37	21	1	38	1.64
3044472--3044587	58	2.0	58	86	9	166	37	19	1	40	1.62
3044916--3044952	11	3.4	11	85	14	58	70	0	29	0	0.88
3045058--3045105	4	12.2	4	78	12	55	75	0	25	0	0.81
3045901--3045940	21	1.9	21	89	0	62	47	10	2	40	1.50
3056606--3056798	50	3.8	50	80	2	217	30	26	17	25	1.97
3059923--3060013	47	1.9	48	84	6	123	36	24	14	25	1.93
3062816--3062962	42	3.3	43	65	25	108	42	18	1	37	1.59
3062784--3062966	91	2.0	90	97	1	348	42	20	1	36	1.59
3064227--3064470	51	4.8	51	76	6	210	31	26	16	25	1.96
3064229--3064461	101	2.3	101	83	1	279	31	27	16	24	1.96
3070158--3071218	76	14.1	75	83	2	1178	29	17	19	33	1.95
3070158--3071218	151	7.0	150	84	3	1175	29	17	19	33	1.95
3070158--3071185	227	4.5	225	84	3	1204	29	17	19	33	1.95
3071517--3071640	29	4.3	30	86	4	148	35	21	4	38	1.73
3071517--3071640	58	2.1	58	86	2	178	35	21	4	38	1.73
3071846--3071888	20	2.2	20	83	8	52	79	4	11	4	1.04
3071984--3072019	11	3.3	11	85	14	56	72	0	27	0	0.85
3071985--3072026	22	2.0	20	90	9	66	69	0	30	0	0.89
3072128--3072197	10	6.4	10	76	20	61	74	1	24	0	0.90
3072133--3072198	4	16.5	4	71	22	50	72	1	25	0	0.93
3072128--3072198	11	6.5	11	75	18	60	73	1	25	0	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3072128--3072198	24	3.2	22	80	18	85	73	1	25	0	0.92
3072533--3072572	11	3.5	12	80	13	57	82	0	17	0	0.67
3073744--3073789	23	1.9	25	91	8	78	28	21	4	45	1.71
3074421--3074605	46	4.0	46	90	0	289	29	24	9	36	1.88
3075401--3075448	23	2.1	23	96	0	87	29	16	18	35	1.93
3078878--3078904	14	1.9	14	100	0	54	51	14	0	33	1.43
3087147--3087216	20	3.5	20	72	16	63	62	0	4	32	1.14
3087199--3087248	9	5.9	8	81	9	55	76	2	0	22	0.89
3087200--3087249	25	1.9	26	88	8	75	78	2	0	20	0.86
3087231--3087266	11	3.2	11	84	7	54	63	0	2	33	1.08
3088356--3088503	73	2.0	73	90	0	233	31	6	25	35	1.82
3089137--3089195	30	2.0	30	89	0	91	25	27	25	22	2.00
3091094--3091124	15	2.1	15	100	0	62	32	0	25	41	1.56
3095506--3095596	28	3.2	28	69	10	78	48	2	1	48	1.21
3098704--3098743	21	2.0	21	85	5	55	5	25	0	70	1.08
3105775--3105800	3	8.7	3	100	0	52	65	0	34	0	0.93
3107152--3107195	13	3.5	13	87	3	63	65	0	0	34	0.93
3107136--3107184	15	2.9	17	77	20	50	63	0	0	36	0.95
3117303--3117342	21	1.9	21	85	10	55	55	15	7	22	1.65
3122563--3122604	20	2.1	20	86	8	59	30	4	4	59	1.39
3126304--3126374	18	3.9	18	88	0	88	30	22	15	30	1.95
3126298--3126372	36	2.1	36	87	0	105	29	22	16	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3132202--3132456	63	4.0	63	98	0	492	30	10	12	46	1.76
3141195--3141264	35	2.0	35	100	0	140	20	17	34	28	1.95
3141905--3141953	23	2.0	26	88	11	77	30	20	0	48	1.50
3141914--3141960	23	2.0	24	87	4	69	34	21	0	44	1.52
3142106--3142134	3	9.7	3	100	0	58	65	0	0	34	0.93
3143757--3143781	10	2.5	10	100	0	50	28	0	0	72	0.86
3148499--3148523	13	1.9	13	100	0	50	32	0	0	68	0.90
3152295--3152320	6	4.3	6	100	0	52	38	0	0	61	0.96
3157649--3157684	15	2.5	15	95	4	65	58	5	2	33	1.36
3159010--3159261	128	2.0	129	80	5	287	28	21	19	29	1.98
3159154--3159261	44	2.5	44	81	6	130	30	21	20	27	1.98
3159568--3159987	44	9.7	44	82	6	500	27	24	19	28	1.98
3159574--3159988	214	1.9	214	93	0	715	27	24	19	28	1.99
3159987--3160485	88	5.7	88	91	1	734	21	23	26	28	1.99
3160069--3160295	44	5.2	44	63	4	152	22	22	28	26	1.99
3160020--3160339	44	7.3	44	60	8	130	23	24	26	25	2.00
3167390--3167424	15	2.4	15	95	4	63	57	5	2	34	1.37
3168098--3168130	13	2.5	13	90	9	50	84	0	0	15	0.61
3168098--3168126	13	2.1	14	93	6	51	82	0	0	17	0.66
3170937--3170976	19	2.1	19	86	9	55	57	0	2	40	1.12
3172975--3173035	29	2.0	31	84	6	81	62	4	0	32	1.17
3177024--3177061	20	1.9	20	88	0	58	36	13	5	44	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3181952--3181978	13	2.1	13	100	0	54	40	22	14	22	1.90
3182342--3182473	67	2.0	67	87	0	192	33	20	9	37	1.84
3185748--3185894	41	3.6	42	83	5	194	25	28	17	28	1.97
3186360--3186602	114	2.1	115	92	3	404	39	14	3	42	1.62
3188018--3188044	11	2.5	11	100	0	54	22	29	7	40	1.81
3189510--3189559	26	1.9	26	84	8	66	34	6	6	54	1.50
3190088--3190132	20	2.2	20	88	7	65	37	2	0	60	1.09
3190706--3190808	6	16.5	6	71	18	50	3	21	1	72	1.10
3191348--3191495	63	2.3	63	85	0	188	24	19	28	27	1.99
3191407--3191530	63	2.0	63	80	3	142	25	20	29	25	1.99
3192742--3192768	4	6.8	4	100	0	54	51	22	0	25	1.48
3193802--3193868	11	6.6	11	70	19	56	46	1	0	52	1.09
3201467--3201509	2	21.5	2	90	0	68	2	48	2	46	1.27
3201907--3201944	17	2.2	18	86	13	53	60	15	23	0	1.35
3202425--3202475	26	2.0	26	92	0	84	27	19	7	45	1.78
3204427--3204469	21	2.1	21	83	12	54	18	4	20	55	1.60
3204474--3205014	273	2.0	273	93	0	920	28	13	12	46	1.79
3205662--3205752	42	2.1	43	82	6	105	21	20	24	32	1.98
3214375--3214399	12	2.1	12	100	0	50	60	16	0	24	1.36
3215302--3215359	19	3.1	19	75	9	64	36	31	18	13	1.90
3215302--3215484	39	4.8	38	75	2	150	31	25	22	19	1.98
3215323--3215484	77	2.1	77	89	0	243	30	24	23	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3215323--3215484	19	8.4	19	68	9	87	30	24	23	20	1.99
3219219--3219260	11	3.9	11	84	6	59	78	0	16	4	0.91
3220413--3220870	45	10.3	44	69	9	250	26	24	19	30	1.98
3220411--3220881	89	5.3	89	91	1	628	25	23	19	31	1.98
3220411--3220881	178	2.6	178	90	0	701	25	23	19	31	1.98
3228541--3228688	43	3.4	43	89	0	215	31	23	17	27	1.97
3228798--3228906	31	3.5	31	91	2	166	45	15	8	30	1.75
3233131--3233195	6	11.3	6	77	9	64	75	6	0	18	1.00
3233131--3233194	23	2.8	23	80	2	67	75	6	0	18	1.01
3235028--3235059	12	2.7	12	90	0	55	90	0	9	0	0.45
3238997--3239025	15	1.9	15	100	0	58	34	3	6	55	1.44
3239044--3239068	13	1.9	13	100	0	50	32	0	0	68	0.90
3242157--3242221	32	2.1	32	97	2	123	47	12	9	30	1.72
3242984--3243038	16	3.6	15	75	15	51	67	0	3	29	1.08
3247689--3247742	22	2.5	22	93	3	92	18	16	27	37	1.93
3248959--3249082	63	2.0	63	86	0	176	26	16	25	31	1.96
3252523--3252566	23	1.9	23	86	9	63	25	0	0	75	0.81
3252623--3252681	27	2.2	27	81	6	66	45	1	5	47	1.34
3252658--3252697	17	2.4	17	88	12	57	50	2	0	47	1.14
3253664--3253700	17	2.2	17	95	0	65	24	2	21	51	1.61
3254928--3255067	46	3.0	46	96	0	253	35	7	26	30	1.85
3260881--3260910	14	2.2	14	94	5	53	23	0	0	76	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3260879--3260918	20	2.0	20	85	0	53	32	0	0	67	0.91
3264194--3264267	24	3.2	24	69	18	75	35	4	31	29	1.76
3264192--3264330	46	3.0	46	92	1	226	35	7	26	30	1.83
3264192--3264259	21	3.1	21	68	17	57	33	2	30	32	1.73
3271148--3271180	17	1.9	17	88	11	50	39	0	3	57	1.14
3271304--3271509	19	10.7	19	71	21	137	33	0	13	53	1.39
3271446--3271535	8	10.4	8	69	19	56	35	1	15	47	1.53
3271427--3271509	27	3.1	27	92	1	141	36	0	12	51	1.39
3271377--3271509	46	3.0	41	82	15	160	33	0	13	53	1.40
3271408--3271556	73	2.0	72	86	7	203	33	0	14	51	1.48

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185