genome.fa.s5.2.7.7.80.10.50.1000.116.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  116  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36071742--36071929	64	2.9	64	82	7	159	34	7	17	40	1.78
36071780--36071956	64	2.8	66	81	13	214	33	7	18	40	1.79
36072917--36072959	21	2.0	20	83	16	52	30	11	16	41	1.83
36074485--36074612	56	2.3	57	91	2	215	28	22	23	25	1.99
36074484--36074612	28	4.6	28	94	0	195	27	23	23	25	2.00
36075067--36075127	27	2.3	27	88	5	88	22	18	19	39	1.92
36096884--36096936	21	2.5	21	81	0	61	32	15	47	5	1.68
36097367--36097546	43	4.2	43	83	1	200	28	15	25	31	1.95
36097326--36097546	86	2.6	86	81	3	216	30	15	23	30	1.95
36098121--36098167	25	1.9	24	86	4	67	42	2	4	51	1.33
36099975--36100014	21	1.9	21	90	10	64	12	37	27	22	1.90
36102110--36102358	124	2.0	124	81	2	295	38	13	12	35	1.83
36102266--36102290	11	2.3	11	100	0	50	64	0	0	36	0.94
36106222--36106251	16	1.9	15	93	6	51	63	0	3	33	1.11
36107711--36107789	20	4.0	20	75	21	76	39	1	5	54	1.30
36107711--36107780	20	3.6	18	81	11	77	38	1	5	54	1.33
36108070--36108113	22	2.0	22	100	0	88	31	4	18	45	1.69
36108075--36108121	22	2.2	22	84	3	60	31	12	12	42	1.81
36108225--36108286	31	2.0	31	100	0	124	38	16	6	38	1.74
36109847--36109935	42	2.1	42	93	4	153	30	26	7	34	1.85
36116153--36116212	29	2.1	29	100	0	120	21	6	16	55	1.64
36116160--36116221	29	2.1	29	85	5	81	25	4	17	51	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36125596--36125967	93	4.0	93	99	0	735	32	10	19	37	1.86
36126854--36127039	47	4.0	47	87	2	250	44	16	12	27	1.83
36126875--36127039	22	7.1	22	73	18	120	45	15	11	27	1.81
36126853--36127028	25	7.5	24	71	18	129	43	16	13	27	1.85
36127974--36128072	28	3.6	27	80	11	103	28	28	11	32	1.91
36134434--36134511	23	3.4	23	82	1	95	23	23	17	35	1.95
36135862--36135960	23	4.3	23	89	0	153	30	25	20	24	1.99
36138236--36138290	27	2.0	27	100	0	110	61	3	21	12	1.46
36142409--36142582	32	5.5	32	83	3	217	37	21	21	19	1.95
36142623--36142686	27	2.4	27	84	7	78	29	23	26	20	1.99
36142765--36142813	24	2.0	24	84	0	62	42	20	8	28	1.80
36142830--36143082	27	9.4	27	84	3	287	24	22	18	33	1.96
36145076--36145110	17	2.0	17	94	5	61	34	0	0	65	0.93
36145076--36145110	6	6.0	6	93	6	63	34	0	0	65	0.93
36154490--36154522	16	2.1	17	88	11	52	33	9	6	51	1.58
36159491--36159520	3	10.0	3	92	0	51	0	30	0	70	0.88
36162602--36162671	34	2.1	34	94	0	122	27	12	12	47	1.78
36164103--36164245	76	1.9	78	83	5	193	36	4	18	41	1.70
36164455--36164818	91	4.0	91	99	0	719	29	5	18	46	1.71
36164925--36164953	15	1.9	15	100	0	58	20	10	27	41	1.85
36165004--36165080	41	1.9	39	81	5	91	29	20	25	23	1.99
36171423--36171475	23	2.4	22	76	20	56	9	18	1	69	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36173842--36173867	6	4.3	6	100	0	52	84	0	0	15	0.62
36175717--36175991	126	2.2	126	82	6	317	38	0	37	23	1.60
36176067--36176105	18	2.2	18	90	9	62	25	10	15	48	1.76
36177609--36177704	37	2.6	37	83	1	111	29	36	14	19	1.92
36179394--36179431	18	2.1	18	85	9	51	34	0	18	47	1.49
36182511--36182549	20	2.0	19	90	5	60	17	23	20	38	1.93
36188834--36188915	19	4.2	19	71	11	58	32	3	2	60	1.27
36188882--36188954	9	7.8	9	74	17	60	35	1	0	63	1.04
36188882--36188953	19	3.8	19	76	7	74	36	1	0	62	1.04
36197492--36197603	58	1.9	59	81	9	138	50	11	10	27	1.72
36198911--36198953	21	2.0	21	86	4	59	44	20	6	27	1.77
36209458--36210624	45	25.8	45	78	5	1039	33	16	20	29	1.94
36209458--36210624	89	12.9	89	88	2	962	33	16	20	29	1.94
36209901--36210544	96	7.0	96	86	6	751	33	14	21	30	1.94
36210456--36210625	44	3.9	43	80	4	162	32	17	21	28	1.95
36213642--36213689	22	2.2	22	92	0	78	31	16	14	37	1.89
36214291--36214379	44	2.0	44	86	0	124	34	17	10	37	1.84
36214584--36214627	20	2.2	20	83	4	52	29	4	6	59	1.44
36222536--36222573	19	1.9	19	89	5	58	71	5	7	15	1.28
36224501--36224564	26	2.5	25	68	9	58	46	0	1	51	1.10
36225243--36225280	20	1.9	20	94	0	67	47	0	23	28	1.52
36229692--36229818	62	2.1	59	89	5	193	44	2	3	50	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36229740--36229821	38	2.2	37	78	10	87	45	2	2	50	1.28
36231387--36231424	17	2.2	18	90	4	60	39	47	2	10	1.52
36231374--36231428	13	3.9	13	78	17	56	40	41	3	14	1.63
36231413--36231486	38	1.9	39	91	2	123	52	24	4	18	1.63
36231619--36231681	17	3.5	17	71	12	63	33	3	14	49	1.59
36231599--36231690	37	2.5	37	89	7	125	33	4	15	46	1.65
36231689--36231719	9	3.4	9	95	0	53	25	9	22	41	1.84
36237059--36237089	16	1.9	16	93	0	53	32	6	12	48	1.67
36242197--36242922	360	2.0	360	100	0	1452	34	18	23	23	1.96
36248781--36248828	25	1.9	25	91	8	80	14	14	10	60	1.59
36249654--36250034	44	8.6	45	76	6	314	28	15	24	30	1.96
36249654--36250028	88	4.2	88	76	7	350	28	16	24	30	1.96
36249646--36250028	176	2.2	177	88	2	572	29	15	24	30	1.96
36263652--36263798	48	3.1	49	80	7	176	20	27	22	29	1.98
36272957--36272998	18	2.5	17	84	7	50	71	7	0	21	1.09
36273178--36273240	33	1.9	34	84	12	87	57	3	0	39	1.15
36273907--36274403	124	4.0	124	99	0	985	27	7	30	34	1.84
36276384--36276439	29	2.0	26	86	10	76	37	0	12	50	1.41
36284349--36284394	23	2.0	23	91	0	74	65	4	2	28	1.23
36293542--36293581	14	2.7	15	84	11	55	57	12	2	27	1.48
36295485--36295542	29	1.9	31	82	6	75	44	18	6	29	1.76
36302360--36302552	50	3.8	50	87	0	260	21	31	21	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36304664--36304696	17	2.0	16	94	5	57	39	0	18	42	1.50
36306557--36306624	31	2.2	31	83	0	82	30	33	17	17	1.94
36309555--36309595	22	1.9	22	90	5	66	12	0	36	51	1.40
36309780--36310190	125	3.3	125	89	0	628	32	17	19	30	1.95
36312038--36312075	18	2.1	18	90	0	58	42	10	26	21	1.85
36335152--36335193	15	2.7	16	82	14	52	45	0	2	52	1.13
36335143--36335184	15	2.9	15	82	10	52	47	0	0	52	1.00
36343524--36343665	18	8.1	17	72	10	90	59	9	26	4	1.49
36343524--36343665	36	4.0	36	81	5	146	59	9	26	4	1.49
36343555--36343618	15	3.9	15	73	23	58	60	7	25	6	1.47
36343512--36343662	69	2.1	71	81	4	180	58	9	26	4	1.49
36347576--36347629	29	2.0	26	85	10	72	68	7	16	7	1.36
36353149--36353208	30	2.0	30	100	0	120	43	10	16	30	1.81
36355443--36356136	131	5.3	131	86	5	804	30	19	24	25	1.98
36356083--36356220	43	3.2	43	70	13	138	34	18	22	23	1.96
36356061--36356223	87	1.9	87	93	0	281	33	19	22	24	1.97
36356070--36356205	44	3.1	44	68	17	120	33	20	20	25	1.97
36356061--36356264	87	2.4	84	85	4	212	31	21	22	25	1.98
36356233--36356352	44	2.7	44	82	0	168	30	22	25	22	1.99
36363214--36363473	57	4.7	57	78	11	272	22	4	45	28	1.71
36363254--36363349	47	2.0	48	89	2	149	23	3	44	28	1.68
36363214--36363473	104	2.4	109	83	7	307	22	4	45	28	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36363452--36363486	18	1.9	18	88	0	52	20	0	54	25	1.45
36370330--36370360	4	7.8	4	100	0	62	48	25	0	25	1.52
36373034--36373099	31	2.1	32	88	2	98	34	12	4	48	1.61
36379869--36380215	82	4.2	82	96	0	604	32	24	19	23	1.97
36379869--36380215	41	8.5	41	90	0	532	32	24	19	23	1.97
36380278--36380388	40	2.8	40	81	6	129	20	20	20	37	1.94
36380531--36380555	13	1.9	13	100	0	50	8	0	24	68	1.16
36382610--36382754	41	3.5	40	90	1	218	26	20	29	23	1.99
36385067--36385091	13	1.9	13	100	0	50	72	0	4	24	1.02
36385147--36385180	11	3.2	11	83	8	52	32	32	11	23	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185