genome.fa.s5.2.7.7.80.10.50.1000.142.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  142  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43148480--43148551	27	2.7	27	76	18	71	63	5	4	26	1.34
43151191--43151237	20	2.6	17	76	20	51	48	6	0	44	1.28
43154862--43155479	315	2.0	315	91	1	999	34	15	17	32	1.91
43155557--43155594	14	2.8	13	92	7	67	47	5	10	36	1.61
43155832--43156042	34	6.1	34	82	3	244	21	23	15	40	1.91
43155832--43156042	69	3.1	68	82	4	253	21	23	15	40	1.91
43155899--43155954	16	3.4	16	69	16	51	19	23	17	39	1.92
43155832--43156042	103	2.0	103	93	0	359	21	23	15	40	1.91
43162978--43163042	26	2.5	26	85	5	78	53	3	4	38	1.37
43166516--43166551	14	2.6	15	83	16	51	50	5	0	44	1.25
43175251--43175284	15	2.3	15	90	5	52	67	5	0	26	1.13
43175481--43175522	22	1.9	22	90	0	66	33	0	33	33	1.58
43175494--43175552	30	2.0	30	90	6	93	32	0	37	30	1.58
43175472--43175571	52	1.9	51	85	2	137	34	0	32	34	1.58
43175524--43175571	22	2.2	22	92	0	78	37	0	31	31	1.58
43175969--43176027	29	2.0	30	83	6	75	40	0	40	18	1.51
43176652--43176694	21	2.0	21	90	0	68	23	11	13	51	1.74
43177017--43177072	29	1.9	29	89	7	87	23	16	21	39	1.92
43189350--43189452	42	2.5	42	79	6	109	45	15	21	17	1.85
43189351--43189452	21	4.9	21	77	4	89	46	15	21	16	1.84
43190798--43190838	20	2.0	22	85	9	59	39	31	4	24	1.76
43191344--43191466	42	2.9	42	79	0	129	43	17	22	17	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43191353--43191453	21	4.8	21	65	12	55	45	17	21	14	1.85
43191569--43191657	24	3.7	24	90	0	142	24	28	7	39	1.83
43192966--43193108	24	5.9	24	92	3	241	23	28	8	39	1.83
43192964--43193108	49	3.0	49	98	0	281	22	28	8	40	1.83
43196123--43196399	46	6.0	46	91	0	437	29	26	8	35	1.86
43196123--43196395	138	2.0	138	95	0	492	29	26	8	35	1.86
43201129--43201242	44	2.7	42	87	2	147	22	20	28	28	1.98
43201129--43201242	42	2.6	44	84	5	144	22	20	28	28	1.98
43202640--43202712	32	2.3	31	95	4	128	38	8	19	34	1.81
43205812--43205872	27	2.3	27	82	5	70	27	9	29	32	1.89
43209699--43209723	13	1.9	13	100	0	50	12	0	0	88	0.53
43213155--43213229	39	1.9	39	100	0	150	42	33	0	24	1.55
43214375--43214444	34	2.0	35	83	2	88	41	18	0	40	1.51
43215291--43215328	19	2.0	19	89	0	58	36	5	2	55	1.37
43215965--43216023	31	1.9	31	82	6	75	61	8	8	22	1.52
43226157--43226187	12	2.5	13	89	10	55	80	0	12	6	0.89
43227361--43227507	73	2.0	73	100	0	294	36	13	16	33	1.88
43233088--43233208	23	5.3	23	86	0	170	20	19	25	33	1.97
43234617--43234719	51	2.0	51	90	3	163	41	6	6	44	1.57
43236349--43236388	21	1.9	21	84	0	53	50	12	0	37	1.41
43240509--43240577	34	2.0	34	97	0	129	36	14	21	27	1.93
43246209--43246260	23	2.3	22	75	21	54	9	23	1	65	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43246254--43246292	18	2.2	18	85	0	51	12	23	2	61	1.43
43248806--43248911	45	2.4	45	82	3	124	42	14	19	23	1.88
43249038--43249112	27	2.8	27	81	0	78	36	14	26	22	1.93
43252358--43252477	32	3.7	33	80	4	131	34	8	17	40	1.80
43252358--43252492	30	4.3	30	77	7	126	34	8	17	40	1.79
43255061--43255207	30	4.8	30	83	3	159	31	8	18	40	1.81
43255405--43255521	41	2.8	41	94	1	198	28	20	22	29	1.98
43261784--43262061	30	8.9	30	81	7	304	31	8	17	41	1.81
43261784--43262089	94	3.2	93	85	5	384	31	8	17	42	1.80
43261784--43262061	60	4.5	61	83	6	335	31	8	17	41	1.81
43265153--43265196	12	3.8	11	82	8	52	50	15	15	18	1.79
43265152--43265181	11	2.6	12	89	10	53	53	16	13	16	1.73
43265793--43265834	20	2.3	17	88	12	57	23	2	0	73	0.94
43267669--43267707	16	2.4	16	95	0	69	35	7	25	30	1.84
43267874--43267997	58	2.1	57	88	2	176	53	3	0	43	1.17
43272736--43272773	12	3.2	12	81	3	51	60	0	0	39	0.97
43272943--43272992	22	2.3	22	83	10	59	42	2	12	44	1.53
43272913--43273020	41	2.6	42	77	11	107	50	3	9	36	1.52
43276830--43276866	19	2.0	18	89	5	56	24	24	24	27	2.00
43277219--43277268	24	2.1	24	96	0	91	48	18	18	16	1.82
43307239--43307978	109	7.0	107	87	6	1014	39	15	15	29	1.88
43308173--43308697	100	5.1	100	85	10	697	33	17	14	34	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43316655--43316691	12	2.9	13	84	15	51	51	0	0	48	1.00
43317215--43317259	20	2.1	22	84	8	58	40	22	6	31	1.80
43319694--43319749	22	2.5	22	83	8	69	46	16	3	33	1.64
43324818--43324875	22	2.7	21	79	10	62	44	17	3	34	1.65
43333536--43333573	18	2.2	18	86	9	53	71	2	5	21	1.19
43335104--43335138	5	7.0	5	96	0	52	34	40	0	25	1.56
43338053--43338641	220	2.7	218	90	4	905	26	15	12	45	1.82
43347623--43347684	29	2.1	29	96	0	115	9	24	14	51	1.72
43348109--43348138	15	2.0	15	93	0	51	36	0	6	56	1.26
43361495--43361555	28	2.2	28	84	0	77	59	1	0	39	1.08
43363951--43364019	29	2.3	29	80	9	77	47	10	14	27	1.76
43365237--43365290	26	2.0	28	85	10	76	62	1	0	35	1.06
43366187--43366239	16	3.3	16	76	10	63	35	24	5	33	1.79
43367407--43367451	17	2.6	17	82	0	54	0	17	6	75	1.01
43372009--43372034	6	4.3	6	100	0	52	30	0	19	50	1.48
43376073--43376114	16	2.6	17	82	17	54	64	2	0	33	1.07
43376807--43376858	27	2.0	26	88	3	77	25	17	11	46	1.81
43383055--43383110	23	2.5	22	78	16	60	71	3	17	7	1.23
43383372--43383406	15	2.3	15	100	0	70	8	20	51	20	1.73
43387694--43387766	35	2.1	35	100	0	146	34	10	12	42	1.78
43389548--43389606	29	2.0	30	86	3	84	28	6	15	49	1.70
43390871--43390911	21	1.9	22	90	5	66	60	2	0	36	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43393561--43393677	41	2.8	42	81	10	143	32	28	19	19	1.96
43393722--43393874	64	2.3	67	85	6	197	41	15	8	34	1.78
43393901--43394025	60	2.1	60	82	5	146	42	15	4	38	1.65
43394400--43394516	41	2.8	42	83	5	141	30	28	20	20	1.98
43398579--43398606	10	2.8	10	100	0	56	42	7	0	50	1.30
43401767--43401945	90	2.0	90	98	0	349	40	12	7	38	1.73
43402267--43402364	41	2.3	45	85	8	141	32	24	16	26	1.96
43402240--43402388	41	3.5	44	75	14	123	27	28	17	26	1.98
43405108--43405161	19	2.8	21	72	16	53	35	22	3	38	1.72
43405985--43406277	110	2.7	109	89	3	435	34	19	15	31	1.92
43406406--43406445	18	2.2	18	86	8	55	75	5	0	20	0.99
43406764--43406792	14	2.0	15	93	6	51	62	6	0	31	1.22
43407025--43407063	15	2.6	15	83	0	51	58	2	2	35	1.25
43416584--43417167	45	12.8	45	77	6	557	33	16	20	29	1.95
43416584--43417221	141	4.6	138	77	10	606	33	17	19	29	1.95
43416587--43417122	186	2.9	185	84	1	691	33	16	20	29	1.95
43416584--43417208	230	2.7	233	81	6	700	33	17	19	29	1.95
43421050--43421104	22	2.4	22	80	19	60	60	1	5	32	1.30
43421105--43421191	4	22.0	4	68	11	54	70	4	21	3	1.21
43421554--43421637	41	2.0	42	82	11	102	28	17	20	33	1.95
43421896--43421924	14	2.0	15	93	6	51	27	3	20	48	1.66
43436322--43436383	24	2.6	25	78	14	67	17	24	19	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43436547--43436594	25	2.0	25	87	4	71	18	25	18	37	1.94
43436421--43436594	26	7.1	24	66	16	72	17	25	20	36	1.95
43440320--43440439	60	2.0	60	100	0	240	38	5	10	46	1.59
43441271--43441304	15	2.3	15	90	10	52	41	0	0	58	0.98
43441269--43441319	15	3.3	15	81	10	50	37	0	1	60	1.08
43456020--43456203	93	2.0	93	96	0	341	19	17	23	39	1.92
43458378--43458404	13	2.1	13	100	0	54	48	14	14	22	1.81
43460588--43460625	18	2.1	18	100	0	76	26	26	10	36	1.89
43463760--43463801	14	3.2	14	87	9	54	59	14	7	19	1.57
43465692--43465719	12	2.3	12	100	0	56	42	0	0	57	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185