genome.fa.s5.2.7.7.80.10.50.1000.55.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  55  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17011041--17011100	11	5.9	11	70	18	58	76	1	8	13	1.08
17011058--17011103	12	3.9	12	80	13	60	76	2	6	15	1.09
17011043--17011079	17	2.2	16	95	4	65	81	0	8	10	0.89
17011054--17011102	22	2.3	22	89	3	73	79	2	6	12	0.99
17013224--17013268	19	2.3	20	84	7	65	77	2	13	6	1.05
17013287--17013316	15	2.1	15	93	6	53	73	0	20	6	1.05
17014726--17014786	20	3.0	20	77	15	56	32	11	31	24	1.91
17019704--17019757	20	2.7	20	82	0	63	24	20	18	37	1.94
17019704--17019775	30	2.4	30	86	9	94	22	19	19	38	1.93
17019704--17019768	20	3.2	20	71	16	53	23	21	16	38	1.93
17026151--17026975	409	2.0	409	99	0	1632	26	19	24	29	1.99
17049511--17049553	12	3.8	11	82	11	52	79	2	4	13	1.00
17049506--17049562	11	4.9	12	79	16	66	73	3	5	17	1.16
17057372--17057420	23	2.1	23	100	0	98	38	8	4	48	1.52
17057676--17057739	29	2.3	28	86	5	85	28	7	4	59	1.46
17057689--17057755	29	2.3	29	84	5	82	31	5	5	56	1.47
17061357--17061402	19	2.4	18	82	10	56	28	23	8	39	1.84
17069348--17069621	39	6.7	40	74	16	206	25	23	25	24	2.00
17069459--17069533	25	3.0	24	88	5	105	29	28	21	21	1.98
17069454--17069530	26	3.0	26	88	3	111	27	28	22	22	1.99
17069518--17069621	40	2.6	39	86	7	140	24	23	27	25	2.00
17075147--17075239	42	2.2	42	92	0	150	27	10	27	33	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17076536--17076901	44	7.8	45	68	19	187	32	19	19	28	1.96
17076488--17076964	142	3.4	142	92	0	783	34	17	19	28	1.95
17076580--17076766	98	1.9	97	81	6	225	32	18	20	28	1.96
17076820--17076916	44	2.2	44	85	3	124	35	18	19	26	1.95
17077040--17077222	50	3.7	50	87	2	190	34	22	18	25	1.96
17086575--17086806	76	3.0	76	86	3	288	15	16	21	45	1.85
17086582--17086825	114	2.1	114	82	3	285	15	16	22	45	1.85
17086582--17086810	38	6.0	38	80	0	233	16	17	21	44	1.86
17095516--17095552	11	3.2	12	85	14	51	75	0	24	0	0.80
17095510--17095560	22	2.4	22	83	3	59	70	0	29	0	0.87
17102544--17102844	38	7.9	38	84	0	395	13	17	25	43	1.86
17106020--17106072	21	2.4	23	78	9	65	30	0	5	64	1.17
17112172--17112204	17	1.9	17	93	0	57	6	15	27	51	1.66
17120456--17120514	17	3.6	17	81	4	59	6	18	35	38	1.78
17121816--17121873	30	1.9	30	85	0	80	31	25	5	37	1.78
17124395--17124641	50	4.8	50	80	6	230	27	21	27	23	1.99
17136223--17136261	19	2.0	19	90	5	60	20	0	30	48	1.50
17138770--17138991	101	2.2	100	82	8	270	25	15	27	30	1.96
17138802--17138988	51	3.7	51	82	4	227	25	17	27	30	1.97
17138912--17138992	26	3.2	26	62	28	64	24	14	27	33	1.95
17139131--17139175	23	2.0	22	83	16	56	40	0	24	35	1.56
17155657--17155712	23	2.4	24	87	3	87	23	19	28	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17157127--17157209	43	1.9	43	90	0	130	33	22	20	22	1.97
17166862--17167028	81	2.1	81	97	0	316	22	25	20	31	1.98
17171452--17171529	29	2.7	29	82	7	88	21	24	21	32	1.98
17172126--17172234	53	2.1	54	83	10	136	36	25	7	30	1.83
17180261--17180305	23	2.0	23	90	0	72	31	6	20	42	1.77
17181755--17182017	40	6.6	40	88	3	325	26	27	20	24	1.99
17189706--17189968	40	6.6	40	88	3	325	26	27	20	24	1.99
17197702--17197731	15	1.9	16	93	6	53	43	0	0	56	0.99
17204516--17204564	24	2.2	22	82	10	55	30	18	20	30	1.96
17204544--17204645	39	2.6	39	82	3	107	24	21	22	31	1.98
17204583--17204708	63	2.0	63	85	3	173	23	23	22	30	1.99
17204514--17204709	102	1.9	102	85	0	266	25	21	22	31	1.98
17220313--17220337	13	1.9	13	100	0	50	8	0	12	80	0.92
17220293--17220324	5	6.4	5	96	0	55	15	0	3	81	0.82
17221958--17222058	23	4.4	23	81	3	98	44	25	14	14	1.84
17237180--17237388	33	5.7	34	69	20	127	32	26	19	21	1.97
17237181--17237390	76	2.8	75	89	0	321	31	27	19	20	1.97
17249409--17249537	28	4.6	28	80	9	136	27	16	22	33	1.95
17249466--17249546	28	2.9	28	86	0	108	32	17	17	33	1.93
17249392--17249636	29	8.8	28	74	12	139	27	15	21	35	1.94
17259868--17259935	34	2.0	34	100	0	136	38	8	11	41	1.73
17275615--17275799	40	4.7	40	81	7	200	24	22	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17275668--17275832	79	2.1	79	83	6	201	26	20	27	26	1.99
17282397--17282513	39	3.0	39	88	0	171	35	8	11	44	1.71
17284680--17284857	27	6.6	27	84	3	205	29	28	15	26	1.96
17284701--17284856	82	1.9	81	88	3	233	29	28	15	26	1.96
17292744--17292921	27	6.6	27	84	3	205	29	28	15	26	1.96
17292765--17292920	82	1.9	81	88	3	233	29	28	15	26	1.96
17298058--17300424	909	2.6	903	85	3	3119	38	13	18	29	1.89
17299878--17302001	823	2.6	827	86	3	2967	43	12	20	23	1.85
17308343--17308384	17	2.5	17	100	0	84	14	9	4	71	1.28
17308425--17308492	12	5.7	12	92	0	109	13	2	8	75	1.16
17309211--17309257	23	2.1	23	84	7	62	51	12	4	31	1.59
17328769--17328937	27	6.2	27	83	4	196	27	15	26	30	1.96
17328770--17328925	82	1.9	81	88	3	233	26	15	28	29	1.96
17336904--17337127	40	5.6	40	91	1	308	24	20	28	26	1.99
17336865--17337127	80	3.3	80	85	3	318	23	20	28	26	1.99
17336865--17337127	120	2.2	120	82	4	318	23	20	28	26	1.99
17353487--17353518	11	2.9	11	95	0	55	18	3	0	78	0.89
17355061--17355106	22	2.1	22	100	0	92	45	21	8	23	1.80
17357876--17357921	12	3.8	12	85	8	58	76	8	2	13	1.11
17357961--17358014	14	3.9	14	92	2	92	62	0	12	24	1.30
17367233--17367294	27	2.3	28	77	8	74	25	37	14	22	1.92
17367312--17367379	27	2.5	27	87	0	91	25	33	19	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17373804--17373848	23	2.0	23	86	8	65	82	0	17	0	0.68
17373788--17373849	10	6.3	10	76	16	58	82	3	14	0	0.80
17383320--17383372	24	2.2	24	89	0	79	41	1	41	15	1.57
17383327--17383378	24	2.2	24	96	0	95	40	0	42	17	1.49
17384111--17384147	9	4.1	9	86	13	58	45	10	10	32	1.74
17387047--17387088	20	2.1	20	100	0	84	30	9	14	45	1.77
17393419--17393473	20	2.8	20	78	10	67	23	30	10	34	1.89
17409185--17409229	11	3.9	12	80	11	58	68	8	6	15	1.36
17409268--17409308	14	2.9	14	92	0	73	63	0	12	24	1.28
17413582--17413620	20	1.9	21	84	5	53	38	17	23	20	1.93
17415244--17415315	30	2.4	30	83	0	90	29	6	34	29	1.83
17415709--17415750	18	2.3	18	80	8	50	45	9	4	40	1.58
17417526--17417735	40	5.3	39	89	4	242	25	21	27	25	1.99
17417473--17417735	120	2.2	120	82	4	309	25	21	27	25	1.99
17417474--17417770	80	3.7	80	81	6	230	26	21	27	24	1.99
17419764--17419811	20	2.3	20	78	3	60	12	33	4	50	1.59
17421230--17421301	30	2.4	30	83	0	90	29	6	34	29	1.83
17427922--17427966	14	3.1	14	87	3	63	73	2	22	2	1.05
17427922--17427972	14	3.5	15	83	2	61	74	1	21	1	1.02
17440906--17440930	9	2.8	9	100	0	50	16	0	0	84	0.63
17441857--17441894	20	1.9	20	88	0	58	34	34	10	21	1.87
17449014--17449051	19	2.0	19	94	0	67	23	10	2	63	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17449244--17449531	43	6.8	43	83	3	377	24	18	31	25	1.98
17449629--17449670	22	1.9	22	90	0	66	42	28	19	9	1.82
17453906--17453976	28	2.6	27	82	14	99	1	21	0	77	0.85
17458748--17458774	3	9.0	3	100	0	54	66	0	0	33	0.92
17461096--17461210	44	2.7	42	78	16	137	29	24	19	26	1.98
17485852--17485891	20	2.0	20	100	0	80	50	10	20	20	1.76
17494665--17494698	14	2.4	14	100	0	68	64	5	0	29	1.17
17514959--17515005	18	2.6	18	86	3	58	44	0	0	55	0.99
17514962--17515005	19	2.3	18	88	7	61	45	0	0	54	0.99
17515225--17515258	17	2.0	17	88	11	52	76	0	23	0	0.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185