genome.fa.s5.2.7.7.80.10.50.1000.158.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  158  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47648709--47648881	45	4.2	39	76	14	125	18	21	21	38	1.93
47648736--47648881	45	3.2	45	86	1	195	17	20	21	40	1.92
47650167--47650198	10	3.2	10	95	0	55	59	3	9	28	1.44
47651563--47651623	30	2.0	30	90	0	95	34	16	4	44	1.69
47651566--47651631	30	2.2	30	86	0	87	39	16	3	40	1.64
47652113--47652192	19	4.1	19	76	13	74	72	0	27	0	0.85
47652113--47652174	23	2.9	22	79	13	67	70	0	29	0	0.87
47652120--47652190	21	3.3	23	73	16	71	76	0	23	0	0.79
47652140--47652192	17	3.1	17	81	8	54	75	0	24	0	0.80
47652349--47652398	12	4.5	11	90	9	75	82	2	16	0	0.77
47652349--47652400	23	2.3	22	87	12	79	82	1	15	0	0.75
47652758--47652832	19	4.0	18	76	13	71	32	17	10	40	1.84
47652758--47652828	18	3.9	17	78	14	70	32	16	11	39	1.84
47653030--47653268	18	13.3	18	67	21	58	30	12	10	46	1.74
47653069--47653239	35	4.9	35	79	7	168	31	11	10	46	1.73
47653065--47653266	18	11.7	17	74	12	128	30	11	10	47	1.74
47653353--47653406	27	2.0	27	96	0	99	27	22	20	29	1.98
47655010--47655421	38	11.2	37	72	17	195	43	9	12	34	1.75
47655139--47655219	21	4.0	21	70	20	66	43	6	11	39	1.65
47655196--47655301	56	1.9	55	86	5	151	42	10	13	33	1.78
47655055--47655408	17	19.2	18	69	15	190	44	9	12	32	1.75
47655885--47655935	9	5.7	9	82	15	61	0	15	0	84	0.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47655885--47655938	26	2.1	25	86	3	72	0	14	0	85	0.61
47655885--47655938	16	3.2	17	87	10	67	0	14	0	85	0.61
47655896--47655938	17	2.6	16	82	10	50	0	13	0	86	0.58
47656184--47656218	13	2.6	13	90	4	52	0	34	0	65	0.93
47656184--47656251	19	3.6	18	78	11	64	1	30	0	67	0.99
47656746--47656870	30	4.2	30	84	2	144	40	4	22	32	1.75
47657049--47657737	82	8.8	78	86	8	936	36	18	16	28	1.92
47657049--47658566	158	9.4	155	81	10	1676	36	18	16	28	1.93
47657049--47658564	317	4.7	315	79	11	1771	36	18	16	28	1.93
47657710--47657767	30	2.0	29	82	3	71	48	6	12	32	1.67
47657946--47658555	82	7.7	79	89	7	918	37	18	15	28	1.92
47658537--47658594	30	2.0	29	82	3	71	48	6	12	32	1.67
47659419--47659538	1	120.0	1	64	0	51	1	7	8	82	0.91
47659419--47659538	9	12.9	9	74	18	79	1	7	8	82	0.91
47659428--47659513	39	2.2	39	91	6	140	1	6	10	81	0.93
47659428--47659538	39	2.8	40	86	6	122	1	7	9	81	0.93
47663120--47663148	4	7.2	4	100	0	58	51	0	24	24	1.48
47664847--47664881	18	1.9	18	88	0	52	34	8	8	48	1.64
47664885--47664933	21	2.5	19	84	12	71	44	8	10	36	1.68
47664891--47664941	21	2.4	21	100	0	102	50	11	9	27	1.70
47664933--47664971	16	2.4	17	95	4	71	53	15	10	20	1.70
47664997--47665037	20	2.0	20	90	4	64	36	7	17	39	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47665024--47665167	56	2.6	55	75	15	150	45	9	11	33	1.72
47664932--47665264	17	18.2	18	69	15	193	45	9	11	33	1.72
47664933--47665265	38	9.1	37	72	14	205	45	9	11	33	1.73
47665749--47665818	7	9.9	7	86	7	97	0	15	0	84	0.63
47665821--47665861	14	2.7	15	82	17	50	2	29	36	31	1.71
47665913--47665955	17	2.4	19	80	11	54	0	13	13	72	1.13
47666612--47666736	30	4.2	30	85	6	137	37	5	24	32	1.79
47670620--47670889	18	15.2	17	71	15	147	30	13	9	47	1.74
47670658--47670862	35	5.9	36	74	5	179	30	13	9	46	1.75
47670772--47670888	52	2.3	50	82	7	137	30	14	11	42	1.82
47670757--47670889	69	1.9	68	82	10	164	29	15	11	44	1.81
47674924--47674961	16	2.2	18	86	9	53	68	2	26	2	1.16
47678325--47678363	18	2.1	19	85	4	53	74	0	23	2	0.94
47678465--47678714	115	2.3	108	88	6	362	27	1	14	57	1.46
47680372--47680410	13	2.8	13	88	11	51	30	2	0	66	1.05
47682515--47682545	3	10.0	3	93	6	53	32	0	0	67	0.91
47682518--47682544	13	2.1	13	100	0	54	29	0	0	70	0.88
47682515--47682545	16	1.9	16	100	0	62	32	0	0	67	0.91
47686900--47686938	17	2.3	17	90	0	60	46	0	2	51	1.14
47686909--47686953	9	5.1	9	82	15	58	44	0	2	53	1.13
47687300--47687331	17	2.0	17	88	11	50	62	15	21	0	1.32
47688341--47688484	45	3.2	45	85	3	166	20	18	20	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47689079--47689107	9	3.2	9	100	0	58	20	0	34	44	1.52
47699530--47699592	28	2.2	28	81	13	76	25	7	4	61	1.43
47699754--47699819	26	2.4	28	75	10	82	31	9	9	50	1.65
47701561--47702431	79	11.0	79	100	0	1742	40	20	12	26	1.88
47703066--47703193	42	3.0	42	79	15	138	32	27	18	21	1.97
47704063--47704108	25	1.9	23	83	16	58	39	13	0	47	1.42
47704071--47704123	23	2.3	22	84	12	70	37	11	0	50	1.38
47706897--47706946	21	2.4	21	79	0	55	18	30	0	52	1.46
47708203--47708282	39	2.1	39	88	4	117	28	21	21	28	1.98
47708763--47708849	21	4.1	21	81	7	104	35	22	21	19	1.96
47708763--47708849	44	2.0	41	82	6	102	35	22	21	19	1.96
47709032--47709093	18	3.4	18	72	16	65	35	20	0	43	1.53
47709030--47709127	36	2.6	37	85	7	119	32	20	1	45	1.58
47709179--47709218	16	2.5	16	88	11	64	25	25	0	50	1.50
47710058--47710095	14	2.4	17	87	12	55	52	2	0	44	1.14
47710087--47710136	21	2.5	20	76	3	55	52	2	0	46	1.12
47744091--47744141	23	2.2	23	96	0	93	23	21	27	27	1.99
47746294--47746331	18	2.1	18	90	0	58	21	26	10	42	1.85
47746750--47746845	34	2.9	33	80	10	110	41	6	6	45	1.54
47746809--47747018	116	1.8	117	82	9	277	41	4	6	47	1.51
47750001--47750291	126	2.3	126	94	0	510	26	21	19	31	1.97
47750324--47750601	97	2.9	94	78	5	301	41	16	3	39	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47762256--47762388	66	2.0	66	92	0	221	37	17	6	39	1.74
47770395--47770516	36	3.4	37	74	6	117	40	6	18	33	1.77
47770916--47771165	49	5.1	49	71	8	177	33	19	26	21	1.97
47770925--47771165	98	2.5	98	86	1	331	32	19	26	20	1.97
47771290--47771462	53	3.2	53	77	4	143	31	19	24	23	1.98
47781226--47781851	50	12.7	50	68	8	276	24	19	22	33	1.97
47781211--47781424	100	2.1	100	90	0	329	24	20	21	32	1.98
47781226--47781851	150	4.2	150	73	3	521	24	19	22	33	1.97
47781282--47781565	143	2.0	143	88	0	424	25	20	19	35	1.95
47781382--47781467	43	2.0	43	95	0	154	24	17	15	43	1.87
47781425--47781910	100	4.9	100	84	1	589	24	18	22	34	1.96
47782186--47782226	16	2.7	15	85	7	64	31	2	21	43	1.66
47782964--47783050	18	4.9	17	78	10	59	6	11	0	81	0.86
47782960--47783040	6	13.5	6	77	12	69	6	13	0	80	0.89
47783479--47783530	1	52.0	1	76	0	50	1	1	7	88	0.66
47783488--47783531	12	3.7	12	90	0	70	2	0	11	86	0.66
47786249--47786301	24	2.2	25	86	3	72	45	5	22	26	1.74
47793277--47793340	13	4.9	13	92	0	110	25	9	26	39	1.86
47793599--47793638	21	1.9	21	90	10	64	57	0	0	42	0.98
47793956--47794072	22	5.3	22	63	22	66	43	5	8	42	1.57
47793951--47794086	44	3.1	43	97	0	227	45	5	9	39	1.59
47795054--47795078	12	2.1	12	100	0	50	64	20	8	8	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47798493--47798517	13	1.9	13	100	0	50	56	12	0	32	1.36
47800632--47800685	23	2.3	23	81	6	56	31	14	0	53	1.41
47800271--47800806	270	2.0	266	96	1	982	31	11	6	50	1.63
47809453--47809487	18	1.9	18	88	0	52	60	5	5	28	1.43
47811870--47811918	22	2.2	22	78	7	55	34	0	4	61	1.15
47813749--47813859	55	2.0	55	98	0	213	43	18	17	21	1.88
47813976--47814541	89	6.4	89	88	0	738	27	24	25	22	2.00
47814611--47814973	132	2.8	132	89	1	541	28	19	26	25	1.99
47827600--47827703	52	2.0	52	100	0	208	53	3	28	13	1.57
47849878--47850008	42	3.2	41	78	7	140	12	20	18	48	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185