genome.fa.s5.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  14  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3846581--3846625	20	2.1	22	84	8	58	24	11	13	51	1.73
3851644--3851778	39	3.4	39	76	7	105	34	21	19	24	1.96
3851829--3851922	41	2.4	41	85	5	122	24	18	21	36	1.95
3852243--3852342	22	4.7	21	71	9	58	23	1	29	47	1.58
3852231--3852342	7	15.7	7	69	10	57	22	0	28	48	1.57
3853077--3853108	13	2.3	15	89	10	50	43	0	0	56	0.99
3856516--3856602	43	2.0	43	86	0	120	32	11	12	43	1.78
3856863--3857131	43	6.3	43	80	7	280	23	15	30	30	1.95
3856865--3857131	86	3.1	84	81	5	320	23	15	31	29	1.95
3862000--3862030	15	2.1	15	100	0	62	54	12	12	19	1.70
3871985--3872032	24	2.1	22	88	7	69	62	8	2	27	1.35
3871989--3872043	25	2.3	23	84	6	65	61	9	1	27	1.36
3871988--3872043	23	2.3	24	81	12	69	60	8	1	28	1.37
3872465--3872526	29	2.1	29	82	5	72	72	1	0	25	0.94
3872501--3872546	22	2.1	21	84	4	56	65	2	0	32	1.05
3872509--3872547	20	2.0	20	89	0	60	66	2	0	30	1.05
3872619--3872680	29	2.1	29	82	8	72	58	3	1	37	1.24
3872602--3872679	19	4.6	19	67	26	66	58	3	1	35	1.24
3872655--3872717	31	2.0	32	84	6	83	63	4	0	31	1.15
3872645--3872704	19	3.5	18	74	19	65	63	3	0	33	1.11
3876966--3877131	78	2.1	80	89	4	257	31	9	25	33	1.88
3881403--3881530	64	2.0	64	96	0	238	28	13	13	44	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3892789--3892848	16	3.7	15	78	12	66	28	0	1	70	0.97
3894881--3894973	44	2.1	44	87	0	132	44	5	23	26	1.75
3901522--3901550	4	7.5	4	92	7	51	0	0	24	75	0.80
3901996--3902048	16	3.3	16	91	0	88	39	3	33	22	1.72
3902262--3902303	15	2.7	16	82	14	52	52	2	0	45	1.13
3902271--3902312	15	2.9	15	82	10	52	52	0	0	47	1.00
3902297--3902484	61	3.1	61	70	14	199	49	6	1	42	1.38
3902260--3902536	120	2.3	121	95	1	495	50	5	1	42	1.35
3902377--3902423	16	3.0	16	78	12	53	51	2	0	46	1.13
3902300--3902483	59	3.1	59	68	22	166	49	6	1	42	1.38
3902870--3902928	30	2.0	30	90	6	93	59	0	1	38	1.08
3902870--3902921	10	5.1	10	75	13	52	55	0	1	42	1.10
3902870--3903053	40	4.5	41	85	9	236	61	0	2	35	1.10
3902869--3902963	11	9.3	11	76	9	51	56	0	2	41	1.11
3902904--3902990	29	3.0	29	79	12	81	60	0	2	36	1.09
3902957--3903053	10	9.6	9	68	20	50	65	0	3	30	1.07
3902984--3903019	18	2.0	18	88	0	54	66	0	0	33	0.92
3902982--3903054	19	3.6	19	74	13	65	64	0	2	32	1.08
3902870--3903053	41	4.5	40	86	7	246	61	0	2	35	1.10
3904129--3904180	25	2.1	25	92	0	86	46	15	23	15	1.83
3943467--3943610	78	1.8	78	88	5	220	43	10	2	43	1.53
3944396--3944421	2	13.0	2	100	0	52	0	0	50	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3951232--3951273	20	2.1	20	86	0	57	47	0	7	45	1.30
3951213--3951273	32	1.9	32	83	12	81	49	1	4	44	1.33
3962609--3962666	19	3.2	18	78	7	64	29	22	20	27	1.99
3962702--3962758	18	3.2	18	67	5	53	33	26	15	24	1.95
3965152--3965317	84	2.0	84	96	0	305	43	3	19	33	1.69
3973973--3974010	18	2.1	18	85	9	51	26	0	2	71	1.00
3977235--3977388	81	1.9	82	91	4	258	28	7	16	48	1.72
3978915--3980775	767	2.4	767	99	0	3713	33	18	17	29	1.94
3981580--3981615	18	2.0	18	100	0	72	22	5	0	72	1.05
3982543--3982584	21	2.0	21	100	0	84	23	19	14	42	1.87
3983294--3983358	28	2.3	29	81	10	89	38	32	9	20	1.84
3986736--3986772	18	2.1	18	90	10	58	32	0	5	62	1.18
3986765--3986789	7	3.6	7	100	0	50	32	0	0	68	0.90
3987014--3987047	14	2.5	13	86	9	50	47	2	0	50	1.16
3989929--3989967	5	7.8	5	94	0	69	23	58	17	0	1.38
3990584--3990624	19	2.0	21	86	9	59	46	4	2	46	1.37
3991679--3991721	15	2.8	15	82	3	50	44	27	0	27	1.55
3991797--3992012	108	2.0	108	99	0	423	31	21	13	34	1.92
3994034--3994084	21	2.4	22	84	15	63	72	11	7	7	1.28
3994562--3994624	21	2.9	21	81	11	56	28	12	3	55	1.52
3996805--3996843	14	2.8	14	92	0	69	46	5	12	35	1.65
3997392--3997452	18	3.3	18	75	18	54	50	0	1	47	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3997398--3997486	42	2.0	46	81	12	107	55	1	1	42	1.14
4001108--4001159	18	2.7	20	74	17	56	36	3	0	59	1.16
4002641--4002675	7	4.7	7	86	13	52	0	11	2	85	0.69
4002643--4002672	16	1.9	16	93	6	53	0	13	3	83	0.77
4005029--4005076	18	2.8	18	74	22	50	43	0	0	56	0.99
4005046--4005087	15	2.9	15	82	10	52	47	0	0	52	1.00
4005055--4005240	59	3.1	59	69	11	180	41	2	5	50	1.37
4005175--4005220	16	2.9	16	78	12	51	45	0	2	52	1.13
4005295--4005336	15	2.7	16	82	14	52	45	0	2	52	1.13
4005286--4005327	15	2.9	14	86	10	50	45	0	0	54	0.99
4005012--4005338	120	2.7	120	95	0	584	43	1	5	49	1.34
4005482--4005571	45	2.0	45	85	6	121	35	26	6	31	1.82
4006002--4006053	24	2.2	23	90	6	86	34	13	1	50	1.53
4006205--4006253	19	2.6	19	84	12	66	28	4	0	67	1.09
4007786--4007824	21	1.9	20	84	5	51	51	17	10	20	1.74
4009157--4009186	15	1.9	16	93	6	53	80	3	0	16	0.85
4012200--4012254	24	2.3	24	93	0	92	27	21	32	18	1.96
4015202--4015393	41	4.7	41	94	0	312	28	22	27	21	1.99
4021970--4022008	18	2.2	17	86	13	53	33	0	20	46	1.51
4022234--4022331	23	4.3	23	89	2	153	21	21	25	31	1.98
4022236--4022324	45	2.0	45	93	0	151	20	22	25	31	1.98
4026135--4026514	44	8.5	44	73	9	151	33	17	18	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4027986--4028026	4	10.8	4	79	10	50	26	2	0	70	0.99
4027979--4028026	12	4.2	12	84	7	55	27	2	2	68	1.11
4030051--4030090	20	2.0	20	90	0	62	27	10	12	50	1.72
4030036--4030102	34	1.9	35	90	3	109	31	8	13	46	1.74
4030030--4030106	14	5.0	15	71	20	52	33	9	14	42	1.77
4032867--4032893	10	2.7	10	100	0	54	44	0	40	14	1.46
4034856--4034897	20	2.2	19	83	8	50	30	11	0	57	1.35
4041858--4041899	13	2.9	14	80	13	50	54	0	0	45	0.99
4041862--4041898	16	2.3	16	86	13	58	59	0	0	40	0.97
4041926--4041976	21	2.4	23	75	18	56	49	5	0	45	1.26
4049513--4049610	25	4.0	25	73	5	76	22	21	20	35	1.96
4062904--4062949	21	2.2	21	88	7	67	4	30	0	65	1.12
4062965--4063029	27	2.4	27	94	0	112	66	0	7	26	1.19
4063538--4063584	5	9.4	5	100	0	94	40	0	0	59	0.97
4063867--4063942	37	2.1	37	100	0	152	31	13	26	28	1.93
4065820--4065850	9	3.4	9	90	0	53	25	12	22	38	1.90
4065905--4065941	9	4.1	9	86	13	58	45	10	10	32	1.74
4066831--4066871	5	8.2	5	100	0	82	21	19	19	39	1.93
4077012--4077075	33	2.0	31	90	6	101	26	1	3	68	1.13
4079328--4079387	30	2.0	31	83	3	77	41	0	38	20	1.52
4079603--4079639	9	4.1	9	89	0	56	32	10	10	45	1.74
4082113--4082270	43	3.7	43	77	5	135	31	29	16	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4084562--4084610	21	2.5	20	77	9	64	22	20	22	34	1.97
4087129--4087208	37	2.2	37	88	0	124	40	17	15	27	1.89
4096255--4096318	30	2.1	30	88	0	92	29	6	39	25	1.80
4103007--4103038	6	5.3	6	100	0	64	84	0	0	15	0.63
4103410--4103475	25	2.6	25	88	4	98	42	13	13	30	1.83
4107927--4108783	428	2.0	427	98	0	1651	40	9	18	32	1.82
4111506--4111642	45	3.0	44	86	6	186	37	27	14	21	1.92
4111463--4111642	90	2.0	88	85	6	238	35	26	15	22	1.94
4117426--4117602	39	4.5	39	90	0	255	28	3	21	46	1.67
4117587--4117640	23	2.3	23	96	0	99	37	3	22	37	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185