genome.fa.s5.2.7.7.80.10.50.1000.24.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  24  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7143411--7143467	30	1.9	30	89	7	89	47	15	0	36	1.46
7143922--7144039	3	39.3	3	100	0	236	33	0	0	66	0.92
7144513--7144548	15	2.5	14	86	8	54	66	2	0	30	1.06
7148984--7149240	43	6.0	43	76	3	212	21	16	19	42	1.89
7148976--7149209	86	2.7	85	81	1	252	20	17	19	43	1.88
7148984--7149229	129	1.9	129	82	3	307	21	16	19	42	1.89
7149391--7149445	27	2.0	27	92	0	92	47	14	12	25	1.80
7152418--7152473	20	2.8	20	86	7	80	75	3	3	17	1.10
7154676--7154725	9	5.6	9	95	0	73	26	10	24	40	1.86
7154668--7154725	18	3.2	18	87	0	80	27	10	22	39	1.86
7160256--7160300	23	2.0	23	82	8	56	48	15	0	35	1.45
7175123--7175557	44	10.0	42	79	10	426	30	12	24	32	1.93
7175123--7175552	88	4.9	88	89	0	637	30	13	24	32	1.93
7175562--7176027	44	10.8	43	72	11	215	28	21	23	26	1.99
7175904--7176028	45	2.8	44	82	4	160	27	24	26	22	2.00
7177018--7177042	10	2.5	10	100	0	50	0	0	8	92	0.40
7178861--7179262	103	3.9	103	98	0	786	54	3	19	22	1.58
7180240--7180354	27	4.3	27	82	0	140	24	24	16	34	1.95
7180240--7180376	27	5.0	27	82	0	121	24	24	15	36	1.93
7180249--7180375	54	2.3	54	87	1	173	24	23	14	37	1.93
7182920--7182967	23	2.1	23	96	0	87	20	29	12	37	1.90
7184205--7184339	67	2.0	67	98	0	261	23	23	11	41	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7187425--7187520	27	3.6	27	67	5	68	21	25	17	35	1.95
7191320--7191373	27	2.0	27	100	0	108	29	11	3	55	1.52
7192334--7192498	59	2.7	60	82	8	183	40	3	3	53	1.32
7193722--7193754	12	2.8	12	95	0	57	24	45	18	12	1.83
7195652--7195701	21	2.5	20	80	3	64	30	34	12	24	1.91
7195751--7195799	20	2.5	20	100	0	98	22	8	26	42	1.81
7204563--7204607	19	2.3	20	81	7	58	40	2	0	57	1.11
7204839--7204899	26	2.3	26	85	0	86	49	27	1	21	1.59
7204839--7204899	13	4.7	13	81	0	77	49	27	1	21	1.59
7207222--7207256	18	2.0	17	94	5	61	8	0	11	80	0.92
7207807--7207846	19	2.1	19	85	0	53	22	2	12	62	1.42
7218002--7218046	16	2.9	16	87	6	58	42	8	0	48	1.34
7220073--7220166	41	2.3	41	94	0	161	29	23	20	26	1.99
7227356--7227509	41	3.8	41	94	0	254	30	22	20	27	1.98
7248758--7249145	23	16.6	23	76	10	306	27	14	17	39	1.89
7248758--7249168	46	8.8	46	79	4	437	27	15	18	38	1.90
7248754--7249167	93	4.4	93	92	2	668	28	14	17	39	1.90
7253003--7253042	20	2.0	21	90	5	64	27	37	0	35	1.57
7252942--7253096	75	2.1	75	87	6	226	25	35	0	38	1.56
7253008--7253151	52	2.7	53	81	13	170	25	36	0	38	1.56
7253135--7253252	54	2.2	54	84	6	150	27	33	0	38	1.63
7252958--7253279	126	2.5	127	81	10	372	27	33	0	38	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7253168--7253282	54	2.1	54	87	3	169	26	36	0	36	1.63
7256812--7256852	18	2.3	19	83	12	59	7	43	31	17	1.76
7258574--7258635	2	31.5	2	76	9	56	45	3	6	45	1.45
7265952--7265991	20	2.1	20	86	9	57	65	15	2	17	1.39
7269999--7270074	11	6.8	11	71	21	52	44	1	1	52	1.17
7287008--7287066	31	1.9	31	82	6	75	44	8	0	47	1.33
7287612--7287664	2	26.5	2	92	0	88	49	47	0	3	1.19
7287664--7287721	2	29.0	2	100	0	116	0	50	0	50	1.00
7290565--7290627	30	2.1	30	82	11	76	26	14	1	57	1.47
7297331--7297377	25	1.9	25	82	4	60	42	12	21	23	1.87
7301173--7301357	101	1.8	102	88	5	286	23	17	28	31	1.97
7301181--7301355	51	3.5	51	84	3	212	24	16	28	31	1.96
7307514--7307591	39	2.0	39	100	0	156	23	17	17	41	1.91
7321653--7321697	18	2.4	18	85	7	54	53	0	2	44	1.13
7321787--7321863	14	5.0	15	71	20	52	42	15	9	32	1.78
7321803--7321842	20	2.0	20	90	0	62	50	12	10	27	1.72
7321791--7321857	34	1.9	35	90	3	109	46	13	8	31	1.74
7321826--7321865	14	2.9	14	84	0	53	42	17	7	32	1.77
7324930--7324973	23	2.0	22	86	4	61	29	4	13	52	1.60
7329983--7330047	27	2.4	27	79	7	69	50	1	6	41	1.36
7331735--7331775	19	2.2	19	100	0	82	58	0	14	26	1.37
7335893--7335930	5	8.0	5	88	11	62	39	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7338395--7338619	99	2.3	96	83	5	274	34	9	9	46	1.69
7344893--7345072	45	4.0	45	80	1	200	44	12	18	23	1.85
7344892--7345064	90	1.9	90	85	2	240	45	12	18	23	1.84
7345265--7345322	27	2.1	27	83	0	71	34	13	25	25	1.93
7346746--7346779	15	2.3	15	94	0	59	35	17	41	5	1.74
7346854--7346883	15	2.0	15	100	0	60	26	0	13	60	1.34
7347780--7347842	24	2.8	21	71	15	63	46	22	0	31	1.52
7355729--7355761	17	1.9	18	88	11	52	45	0	12	42	1.41
7361749--7361773	5	5.0	5	100	0	50	80	20	0	0	0.72
7365936--7366027	35	2.6	35	81	3	105	27	21	25	26	2.00
7385144--7385521	189	2.0	189	100	0	756	41	6	15	35	1.74
7397152--7397176	6	4.2	6	100	0	50	16	48	0	36	1.46
7402215--7402258	23	1.9	22	82	17	54	36	25	0	38	1.56
7402306--7402391	45	1.9	45	90	0	136	32	22	16	29	1.95
7404911--7404992	42	2.0	42	83	9	105	30	23	13	32	1.93
7407622--7407709	45	2.0	45	86	0	122	32	22	18	26	1.97
7407720--7407906	51	3.7	51	75	5	173	27	28	18	24	1.98
7409357--7409712	27	13.2	27	87	0	444	18	19	22	40	1.91
7414103--7414458	27	13.2	27	87	0	444	18	19	22	40	1.91
7432288--7432336	19	2.5	19	90	3	71	32	16	0	51	1.45
7433057--7433100	18	2.6	17	82	7	54	70	0	27	2	0.99
7439819--7439894	38	2.0	38	92	0	125	27	18	18	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7439823--7439910	38	2.3	38	86	0	113	28	19	17	35	1.94
7440328--7440358	7	4.3	7	95	4	53	41	0	16	41	1.48
7444505--7444529	11	2.3	11	100	0	50	44	0	8	48	1.32
7450694--7450753	27	2.3	27	94	2	104	46	18	21	13	1.83
7450992--7451027	17	2.1	17	89	0	54	8	16	2	72	1.21
7453660--7453725	25	2.6	25	92	0	105	28	25	15	30	1.96
7458381--7458680	119	2.5	118	79	8	315	23	24	13	39	1.90
7458381--7458680	30	10.1	30	76	8	222	23	24	13	39	1.90
7466022--7466388	30	12.2	30	77	7	214	22	24	14	39	1.91
7466014--7466270	119	2.1	121	82	7	308	22	25	13	38	1.91
7466146--7466243	33	3.1	33	88	4	139	29	21	12	36	1.90
7466105--7466354	59	4.2	62	73	10	207	21	25	14	39	1.91
7466034--7466388	181	2.0	182	87	2	518	22	24	14	38	1.92
7467156--7467194	15	2.5	17	88	12	57	23	10	0	66	1.22
7468205--7468229	10	2.5	10	100	0	50	76	0	0	24	0.80
7468274--7468306	11	3.1	11	91	4	50	72	3	0	24	0.98
7468281--7468307	14	1.9	14	100	0	54	74	0	0	25	0.83
7469187--7469211	13	1.9	13	100	0	50	32	0	4	64	1.12
7470559--7470597	4	9.8	4	94	0	69	20	0	0	79	0.73
7470857--7470890	17	2.0	17	94	0	59	29	2	5	61	1.34
7471213--7471280	34	2.0	34	97	0	127	51	8	13	26	1.70
7474507--7474551	16	2.8	17	78	21	60	84	8	6	0	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7474516--7474549	14	2.3	14	90	10	50	85	5	8	0	0.75
7474997--7475037	12	3.4	12	80	12	57	78	0	19	2	0.87
7474988--7475037	24	2.2	22	89	7	73	78	2	18	2	0.95
7474985--7475021	17	2.2	17	95	0	65	78	2	18	0	0.87
7482989--7483347	44	8.2	45	80	6	342	27	16	25	30	1.97
7483015--7483336	176	1.8	175	87	0	482	28	16	26	29	1.97
7483015--7483347	132	2.5	132	83	5	390	28	16	25	29	1.97
7483412--7483573	50	3.3	49	72	2	144	33	21	22	22	1.97
7483579--7484023	82	5.4	82	92	0	746	30	25	21	22	1.99
7484086--7484534	44	10.2	44	65	12	168	28	18	23	30	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185