genome.fa.s5.2.7.7.80.10.50.1000.184.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  184  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56145012--56145085	25	3.0	25	89	0	112	37	5	17	39	1.73
56149735--56149954	48	4.6	47	71	9	142	29	25	17	27	1.98
56155548--56155613	28	2.3	28	81	5	78	46	9	7	36	1.64
56157473--56157536	6	10.3	6	93	3	83	15	23	0	60	1.34
56160098--56160137	21	1.9	21	85	10	55	35	5	7	52	1.51
56160686--56160811	59	2.1	59	92	0	207	27	19	13	38	1.90
56161319--56161357	18	2.1	18	90	4	60	10	12	25	51	1.71
56161317--56161361	19	2.3	20	85	11	67	11	13	26	48	1.75
56167721--56167763	18	2.3	18	84	4	50	11	2	25	60	1.43
56169081--56169123	21	2.1	21	87	8	63	25	18	6	48	1.73
56171319--56171401	39	2.1	39	97	0	157	31	21	8	38	1.83
56172907--56172951	19	2.4	18	82	10	56	66	4	0	28	1.11
56172909--56172952	20	2.3	19	80	7	54	70	4	0	25	1.06
56172947--56172990	22	2.0	23	86	4	63	61	4	4	29	1.36
56178316--56178367	19	2.9	17	72	13	50	28	23	0	48	1.51
56179460--56179499	15	2.5	17	84	15	50	7	17	0	75	1.03
56180999--56181041	15	3.0	15	86	6	54	60	13	11	13	1.59
56187269--56187321	26	2.0	27	85	7	74	26	13	22	37	1.91
56198034--56198063	14	2.1	14	100	0	60	53	20	6	20	1.67
56199165--56199234	25	2.8	25	91	0	113	24	22	27	25	2.00
56199453--56199741	27	10.7	27	88	2	393	27	20	16	34	1.94
56199455--56199724	136	2.0	136	90	0	423	26	21	16	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56199778--56199984	27	7.7	27	81	3	238	28	9	22	39	1.85
56199751--56199856	54	2.0	54	81	3	124	34	9	20	34	1.85
56199780--56199991	54	3.9	53	86	3	273	29	9	22	39	1.85
56199780--56199977	80	2.5	80	83	3	245	29	9	21	39	1.85
56199780--56199991	107	2.0	108	86	0	300	29	9	22	39	1.85
56200865--56200917	25	2.1	25	85	0	70	20	24	15	39	1.91
56201340--56201389	23	2.2	23	85	7	66	64	6	0	30	1.18
56204390--56204713	162	2.0	162	89	1	497	39	4	14	40	1.68
56206635--56206696	21	3.0	21	69	9	54	16	20	14	48	1.81
56207199--56207239	2	20.5	2	94	0	73	0	0	46	53	1.00
56212296--56212453	2	79.5	2	98	1	309	50	0	0	50	1.00
56239085--56239352	104	2.6	105	92	1	441	29	30	20	19	1.97
56239687--56239744	30	1.9	30	82	0	71	29	24	8	37	1.85
56255268--56255515	124	2.0	124	96	0	460	27	23	18	31	1.98
56256550--56256604	18	3.0	19	71	17	53	61	1	0	36	1.06
56256550--56256626	19	4.3	17	73	18	59	63	3	0	32	1.12
56259312--56259336	13	1.9	13	100	0	50	40	0	0	60	0.97
56259608--56259659	19	2.8	18	72	13	52	78	0	1	19	0.84
56259600--56259674	31	2.4	31	82	8	89	69	2	2	25	1.15
56259600--56259676	32	2.4	32	85	10	104	67	2	3	25	1.21
56274398--56274426	14	2.1	14	93	6	51	44	0	0	55	0.99
56280578--56280670	3	31.3	3	69	10	57	34	6	3	55	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56299941--56299994	22	2.3	24	78	15	60	35	3	7	53	1.47
56307167--56307218	25	2.2	25	86	6	72	26	3	1	67	1.18
56307838--56307907	23	3.0	23	69	8	61	38	4	14	42	1.65
56312140--56312170	16	1.9	16	100	0	62	32	6	6	54	1.51
56312892--56313134	134	1.8	134	88	0	378	31	13	15	39	1.86
56313032--56313243	99	2.1	99	84	0	262	30	13	14	41	1.85
56313138--56313722	134	4.4	134	84	3	710	31	16	13	39	1.86
56312926--56313370	233	1.9	233	83	0	584	30	14	14	40	1.86
56313250--56313457	71	3.0	70	65	23	170	33	17	11	37	1.86
56313265--56313479	63	3.3	63	68	16	166	32	15	12	39	1.85
56319632--56319674	20	2.4	16	85	14	50	44	6	0	48	1.29
56320904--56320933	16	1.9	16	93	6	53	36	6	23	33	1.81
56324353--56324378	10	2.6	10	100	0	52	34	30	11	23	1.90
56327758--56327793	5	7.0	5	87	6	54	41	0	0	58	0.98
56328046--56328070	7	3.6	7	100	0	50	84	0	0	16	0.63
56328715--56328752	15	2.7	15	88	8	53	63	2	0	34	1.09
56330585--56330894	84	3.7	84	76	2	282	24	9	32	33	1.88
56339673--56339714	22	1.9	22	90	0	66	42	11	7	38	1.69
56341349--56341464	37	3.1	37	83	0	142	21	19	9	49	1.77
56341473--56341552	37	2.2	37	79	4	90	21	27	13	37	1.91
56343041--56343095	24	2.3	23	84	9	74	50	0	0	49	1.00
56343052--56343123	37	1.9	37	86	5	101	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56347992--56348050	30	2.0	30	90	3	93	44	0	37	18	1.50
56348262--56348298	9	4.1	9	92	0	65	29	10	13	45	1.77
56349143--56349212	13	5.2	13	73	16	54	35	17	2	44	1.63
56349133--56349212	26	3.0	26	77	14	74	37	18	2	41	1.64
56357798--56357865	32	2.1	32	83	5	84	39	4	10	45	1.58
56367870--56367967	23	4.3	23	90	2	162	31	26	21	20	1.98
56367877--56367965	45	2.0	45	95	0	160	31	26	22	19	1.97
56371868--56371924	30	1.9	30	85	3	80	42	1	24	31	1.65
56372136--56372167	13	2.5	13	94	0	55	31	0	12	56	1.37
56372266--56372707	101	4.4	101	99	0	875	26	25	28	19	1.99
56379448--56379474	2	13.5	2	100	0	54	0	0	48	51	1.00
56390171--56390224	6	9.0	6	85	0	72	27	14	37	20	1.92
56396364--56396424	32	1.9	32	86	6	88	24	13	24	37	1.91
56398429--56398511	36	2.3	36	82	0	94	21	19	34	24	1.96
56399657--56399708	27	1.9	27	96	0	95	15	25	36	23	1.93
56399795--56399823	14	2.0	15	93	6	51	75	0	24	0	0.80
56399902--56399984	39	2.0	42	82	13	102	19	0	16	63	1.30
56403336--56403410	33	2.3	33	81	4	89	28	17	36	18	1.94
56403523--56403579	24	2.4	24	90	0	96	8	29	42	19	1.81
56406156--56406214	8	7.2	8	73	17	50	1	35	0	62	1.05
56406168--56406216	3	17.0	3	76	23	52	0	32	0	67	0.91
56425268--56425319	21	2.5	21	93	6	88	30	5	34	28	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56427689--56427728	18	2.1	20	90	9	66	47	0	0	52	1.00
56439970--56440020	27	2.0	26	85	11	70	64	0	0	35	0.94
56448790--56448887	50	2.0	49	86	7	137	33	11	11	43	1.76
56450976--56451098	33	3.5	33	73	19	113	19	21	28	30	1.97
56451918--56452258	85	4.0	85	99	0	664	29	17	17	35	1.94
56453996--56454174	51	3.5	50	84	5	225	30	26	18	25	1.98
56453996--56454234	51	4.8	51	76	8	210	29	27	17	25	1.97
56453988--56454229	101	2.5	100	81	6	271	29	27	17	25	1.98
56455489--56455531	9	4.8	9	91	0	68	44	16	11	27	1.82
56455486--56455531	18	2.6	18	100	0	92	45	15	10	28	1.79
56456779--56456846	26	2.5	27	86	11	95	30	0	0	69	0.89
56456786--56456853	26	2.6	25	84	9	82	26	0	1	72	0.94
56476572--56476675	52	2.0	52	90	0	163	37	7	10	44	1.68
56476996--56477064	36	1.9	36	82	5	86	21	30	2	44	1.67
56494848--56494878	3	10.3	3	100	0	62	0	32	0	67	0.91
56497922--56497993	36	2.0	36	91	0	117	34	19	9	36	1.85
56499001--56499041	17	2.4	17	87	0	55	65	2	2	29	1.18
56500529--56500584	16	3.4	16	87	9	69	21	0	3	75	0.96
56500530--56500585	26	2.2	26	87	3	78	21	0	3	75	0.96
56500759--56500810	20	2.5	21	79	14	63	30	3	3	61	1.32
56508462--56508550	25	3.6	25	75	11	83	16	30	20	32	1.95
56508469--56508577	50	2.2	50	79	0	119	19	29	20	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56516352--56516381	3	10.0	3	100	0	60	33	33	33	0	1.58
56522540--56522575	13	2.6	14	86	8	56	30	16	41	11	1.83
56533789--56533836	15	3.1	15	87	6	60	0	29	0	70	0.87
56559272--56559309	16	2.3	17	86	4	51	42	2	7	47	1.46
56570326--56570460	40	3.3	40	75	12	132	21	14	28	35	1.93
56572510--56572541	15	2.0	17	88	11	50	25	0	31	43	1.55
56599586--56599614	12	2.3	13	94	5	51	65	0	0	34	0.93
56599807--56599843	19	1.9	19	88	0	56	59	27	2	10	1.44
56600066--56600115	17	2.8	18	93	6	84	42	44	0	14	1.44
56600092--56600116	13	1.9	13	100	0	50	40	48	0	12	1.40

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185