genome.fa.s5.2.7.7.80.10.50.1000.139.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  139  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42501463--42501513	16	3.1	16	85	5	57	21	1	0	76	0.88
42501602--42501643	10	4.3	10	81	6	50	33	0	2	64	1.07
42510125--42510153	15	1.9	15	100	0	58	48	6	3	41	1.47
42511877--42511908	7	4.6	7	96	0	55	25	0	12	62	1.30
42511880--42511914	14	2.5	13	86	13	52	25	0	14	60	1.35
42513023--42513504	25	19.9	25	73	17	358	41	0	14	43	1.46
42513024--42513504	121	4.0	121	98	0	899	41	0	14	44	1.45
42513503--42513653	23	6.8	23	85	7	213	47	21	5	25	1.72
42513519--42513651	41	3.1	41	81	10	176	46	21	5	27	1.72
42513506--42513653	64	2.2	66	91	5	237	45	22	5	26	1.73
42514378--42514616	124	1.9	124	88	3	356	32	20	17	29	1.96
42518198--42518325	25	5.3	25	77	12	142	38	0	14	47	1.44
42518143--42518230	45	2.0	45	90	0	140	36	0	11	52	1.38
42518153--42518353	70	2.9	70	97	0	375	36	0	12	50	1.41
42520250--42520275	13	2.0	13	100	0	52	61	30	0	7	1.24
42521087--42521226	43	3.3	42	76	9	115	34	25	16	24	1.95
42524763--42524789	4	6.8	4	100	0	54	25	0	22	51	1.48
42526761--42526824	33	1.9	34	87	6	96	43	17	4	34	1.69
42527693--42527811	23	5.3	21	75	14	80	17	6	25	50	1.70
42527724--42527807	23	3.7	23	88	0	132	20	7	28	44	1.78
42529647--42529680	17	2.0	17	94	0	59	44	5	0	50	1.26
42529647--42529685	17	2.4	16	87	8	53	43	5	0	51	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42529651--42529690	17	2.3	18	83	12	57	47	5	0	47	1.24
42529719--42529902	66	3.1	59	68	20	164	42	2	5	49	1.39
42529766--42529800	18	2.0	17	88	5	52	45	0	0	54	0.99
42529646--42529940	120	2.5	120	93	1	486	42	3	4	49	1.39
42529890--42529931	15	2.9	15	82	10	52	47	0	0	52	1.00
42529874--42530190	157	2.0	157	95	0	562	47	4	3	43	1.41
42530043--42530077	18	2.0	17	88	5	52	45	0	0	54	0.99
42530313--42530348	16	2.2	16	100	0	72	38	36	0	25	1.56
42539222--42539274	27	2.0	27	85	7	72	41	0	20	37	1.53
42539586--42539708	24	5.0	24	88	1	165	40	8	27	22	1.84
42539586--42539699	25	4.6	25	91	1	169	41	8	27	22	1.83
42543066--42543099	2	17.0	2	100	0	68	50	0	50	0	1.00
42546418--42546455	18	2.1	19	90	5	60	73	0	0	26	0.83
42546380--42546457	15	5.4	15	83	14	62	66	1	2	29	1.13
42546380--42546443	3	20.3	3	84	9	67	65	1	3	29	1.17
42546415--42546457	18	2.4	17	85	11	59	72	0	0	27	0.85
42556100--42556175	33	2.5	31	78	20	79	42	0	6	51	1.28
42557652--42557692	20	2.0	21	85	4	57	24	17	9	48	1.76
42560739--42560773	18	2.0	18	88	5	54	54	0	0	45	0.99
42560719--42561034	120	2.6	118	92	3	499	48	3	3	44	1.36
42560857--42560893	16	2.2	17	86	13	51	54	0	2	43	1.14
42560754--42561034	59	4.7	59	69	20	183	48	3	3	43	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42560781--42560977	63	3.2	60	70	19	165	46	5	4	43	1.47
42560974--42561049	29	2.7	29	78	8	77	52	0	1	46	1.08
42560971--42561096	16	7.1	18	64	28	56	49	0	2	48	1.14
42561047--42561694	91	7.1	91	96	0	1156	47	3	3	45	1.38
42565242--42565295	25	2.2	25	83	6	65	12	14	16	55	1.69
42573528--42573594	31	2.2	31	86	0	89	46	8	14	29	1.76
42573535--42573603	31	2.2	31	86	0	102	44	11	13	30	1.78
42579315--42579355	21	2.0	21	90	0	64	29	21	29	19	1.98
42584004--42584118	60	1.9	60	96	0	212	46	13	12	27	1.78
42584747--42584919	42	4.1	42	84	2	224	30	19	20	30	1.97
42585871--42585940	4	17.5	4	100	0	140	50	25	0	24	1.50
42587012--42587041	4	7.5	4	92	0	51	46	23	3	26	1.68
42588165--42588233	32	2.2	32	83	0	84	11	24	10	53	1.68
42591560--42591734	84	2.1	84	92	2	289	17	14	30	37	1.90
42592202--42592444	114	2.1	114	100	0	486	39	3	13	43	1.63
42592879--42593015	28	4.9	28	72	15	113	13	1	43	40	1.53
42592951--42593001	21	2.4	21	86	0	75	5	0	45	49	1.26
42592920--42592998	7	11.1	7	80	1	68	10	0	49	40	1.37
42593866--42593922	23	2.4	24	85	2	71	29	45	1	22	1.63
42594395--42594434	12	3.3	12	83	13	55	22	7	12	57	1.60
42594395--42594440	24	1.9	24	86	0	65	28	8	10	52	1.66
42594700--42594737	18	2.1	18	100	0	76	18	10	15	55	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42595533--42595904	70	5.3	70	95	1	642	42	4	5	47	1.49
42595602--42595699	24	4.2	23	63	27	55	40	3	7	48	1.46
42595533--42595904	139	2.7	140	94	1	642	42	4	5	47	1.49
42595694--42595793	24	4.2	24	68	23	61	41	5	5	49	1.46
42595704--42595870	24	7.2	23	63	25	57	43	5	5	45	1.49
42596014--42596050	19	1.9	19	100	0	74	48	16	2	32	1.60
42595997--42596087	47	1.9	47	97	0	173	49	14	1	35	1.51
42596179--42596232	16	3.3	16	89	2	81	50	16	0	33	1.46
42596300--42596376	9	9.3	9	72	18	69	42	19	2	35	1.65
42596300--42596355	25	2.2	25	90	0	85	42	19	1	35	1.62
42596328--42596374	15	3.0	16	87	6	78	46	19	2	31	1.61
42603983--42604203	111	2.0	111	98	0	424	29	20	21	28	1.98
42604842--42604887	19	2.5	18	86	6	65	26	13	0	60	1.32
42605115--42605216	44	2.3	45	81	3	118	23	16	28	31	1.96
42605113--42605447	43	7.8	42	73	10	221	25	18	26	29	1.98
42605965--42605994	15	1.9	16	93	6	53	36	0	0	63	0.95
42609505--42609580	9	8.4	9	84	5	91	27	7	19	44	1.78
42611450--42611530	39	2.1	39	95	0	144	19	8	19	51	1.72
42617763--42617882	25	4.9	25	73	7	84	21	23	20	34	1.97
42619814--42619978	83	2.0	82	92	1	276	38	15	20	26	1.92
42621617--42621682	34	1.9	34	87	6	98	33	9	10	46	1.70
42621770--42621813	18	2.4	18	81	7	54	38	0	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42621917--42621981	34	1.9	34	93	6	114	41	4	10	43	1.60
42622539--42622588	26	1.9	26	95	0	91	44	12	10	34	1.75
42622609--42622661	21	2.7	19	69	11	52	41	22	9	26	1.84
42624223--42624269	24	1.9	25	83	12	62	14	4	4	76	1.09
42628817--42628856	20	2.0	20	100	0	80	30	25	15	30	1.95
42632446--42632609	82	2.0	82	98	0	319	33	23	11	31	1.90
42636935--42637170	45	5.3	45	76	7	185	30	19	22	27	1.98
42637018--42637193	44	4.0	45	78	5	153	31	18	23	27	1.97
42636962--42637195	89	2.6	88	79	4	220	31	19	23	26	1.98
42636927--42637280	133	2.7	133	78	2	397	30	17	23	28	1.97
42637423--42637507	44	1.9	45	85	2	118	29	14	25	30	1.95
42638403--42638461	24	2.5	23	72	22	59	13	5	3	77	1.05
42641255--42641283	7	4.1	7	100	0	58	58	13	13	13	1.63
42645809--42645840	15	2.0	17	88	11	50	40	6	0	53	1.26
42658590--42658619	7	4.1	7	95	4	51	53	0	0	46	1.00
42667983--42668027	19	2.4	19	96	0	81	28	17	17	35	1.93
42669529--42669582	22	2.5	22	81	0	72	57	0	3	38	1.17
42669541--42669579	2	19.5	2	83	0	51	48	0	5	46	1.24
42669621--42669679	25	2.3	25	85	5	73	38	3	18	38	1.68
42669639--42669692	25	2.1	26	93	6	92	46	0	11	42	1.39
42669644--42669699	27	2.2	25	87	6	76	51	1	10	35	1.47
42669728--42669757	11	2.6	11	94	5	51	73	0	0	26	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42671289--42671511	44	5.0	43	68	17	125	28	20	19	31	1.97
42671666--42671821	81	1.9	81	86	2	224	28	17	20	33	1.96
42671642--42671924	41	6.8	41	68	18	138	27	20	21	30	1.98
42671547--42671944	210	1.9	210	87	3	586	26	19	20	32	1.97
42671554--42671965	44	9.7	44	69	14	236	27	20	20	31	1.97
42671747--42671993	129	1.9	129	90	3	390	25	21	22	31	1.98
42672052--42672691	99	6.5	99	91	0	958	24	20	22	32	1.98
42674018--42674055	17	2.3	16	91	8	67	5	0	7	86	0.69
42678296--42678353	25	2.3	26	88	8	84	48	1	8	41	1.44
42682919--42682999	35	2.3	34	83	8	101	49	2	9	38	1.49

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185