genome.fa.s5.2.7.7.80.10.50.1000.162.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  162  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48575870--48575948	24	3.2	24	80	7	88	36	24	22	16	1.94
48576264--48576303	18	2.2	19	86	4	55	27	12	12	47	1.77
48576499--48576561	33	1.9	33	96	0	117	41	19	7	31	1.80
48580001--48580188	46	4.1	46	92	0	313	28	23	8	39	1.84
48585020--48585058	18	2.0	21	85	14	57	41	0	0	58	0.98
48585328--48585650	161	2.0	162	98	0	630	39	16	13	29	1.87
48589604--48589642	14	2.7	14	84	4	51	82	2	10	5	0.93
48589729--48589802	15	4.7	16	78	6	80	74	0	4	21	0.98
48589734--48589806	31	2.4	30	86	6	94	75	0	2	21	0.93
48608769--48608793	2	12.5	2	100	0	50	48	0	0	52	1.00
48610305--48610335	3	10.3	3	100	0	62	0	32	0	67	0.91
48610663--48610712	23	2.2	22	85	3	64	56	8	6	30	1.52
48613826--48613879	26	2.1	26	82	0	63	55	9	1	33	1.42
48613873--48613959	24	3.6	23	80	13	79	63	2	4	29	1.27
48613878--48613959	25	3.3	26	75	14	82	62	2	4	30	1.29
48617627--48617756	50	2.6	51	87	1	181	19	30	24	25	1.98
48619737--48619769	17	1.9	17	93	0	57	54	0	6	39	1.25
48620104--48620168	20	3.3	19	78	8	67	30	1	0	67	1.00
48620287--48620344	19	3.1	19	79	16	59	34	8	0	56	1.30
48625988--48626199	107	2.0	107	95	0	379	24	28	12	34	1.92
48632991--48633074	32	2.6	32	77	9	82	32	13	3	51	1.58
48633022--48633089	33	2.1	33	82	0	82	35	11	4	48	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48634081--48634121	21	2.0	21	85	9	57	65	24	2	7	1.30
48639157--48639195	19	2.0	20	95	5	71	82	10	2	5	0.93
48639415--48639458	24	1.9	24	86	9	65	38	0	2	59	1.10
48639492--48639632	68	2.1	67	80	14	164	46	9	5	37	1.61
48639552--48639579	9	3.1	9	100	0	56	57	10	0	32	1.33
48639522--48639663	68	2.1	66	94	2	248	45	9	4	40	1.58
48639652--48639704	23	2.3	23	83	3	63	41	3	3	50	1.38
48640175--48640227	24	2.3	23	84	9	72	83	1	13	1	0.82
48640178--48640219	8	5.2	8	80	11	50	85	0	11	2	0.68
48640175--48640232	16	3.3	17	78	11	55	82	1	12	3	0.86
48640948--48640988	16	2.7	15	85	7	64	43	21	2	31	1.66
48641151--48641412	44	5.9	44	76	7	237	26	17	26	29	1.97
48641179--48641412	45	5.3	44	77	4	211	27	17	26	28	1.97
48641154--48641412	133	2.0	132	93	0	446	26	16	26	30	1.97
48641172--48641454	133	2.1	133	88	4	403	28	17	25	28	1.97
48641491--48641775	50	5.7	50	69	6	175	30	21	21	27	1.98
48641461--48642026	100	5.8	100	83	4	702	29	21	22	27	1.99
48641541--48641978	50	9.0	50	64	11	154	29	20	23	26	1.99
48642047--48642641	40	14.3	40	75	14	508	31	23	20	24	1.98
48642033--48642726	126	5.5	125	84	6	764	31	23	20	24	1.98
48642130--48642641	208	2.5	207	85	5	642	31	23	20	24	1.98
48642047--48642752	84	8.5	82	79	7	538	31	23	20	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48643018--48643058	21	2.0	21	85	9	57	65	24	2	7	1.30
48645499--48645543	23	2.0	23	82	8	56	44	11	6	37	1.66
48645683--48645723	19	2.1	20	90	4	66	53	4	4	36	1.44
48645739--48645773	19	1.9	19	88	11	56	60	2	2	34	1.26
48646454--48646492	19	2.2	17	90	9	60	30	0	5	64	1.15
48651150--48651408	127	2.0	128	96	0	475	43	16	12	27	1.84
48653516--48653597	29	2.8	30	83	7	80	31	20	4	42	1.73
48653513--48653615	30	3.5	28	79	11	98	33	18	3	44	1.68
48654164--48654237	6	11.3	6	77	16	67	77	0	22	0	0.78
48654164--48654237	14	5.7	12	78	13	67	77	0	22	0	0.78
48654161--48654244	15	5.4	15	75	18	73	77	0	22	0	0.77
48654164--48654244	33	2.6	33	84	7	107	77	0	22	0	0.76
48654173--48654244	27	2.8	25	78	14	83	79	0	20	0	0.74
48654351--48654416	25	2.6	26	81	13	93	66	7	25	0	1.18
48654346--48654415	23	3.0	23	84	10	88	68	7	24	0	1.14
48654447--48654497	24	2.2	24	86	10	70	21	45	29	3	1.70
48654470--48654507	19	1.9	19	89	5	58	26	44	26	2	1.67
48654518--48654578	10	6.0	10	84	3	68	80	0	18	1	0.80
48655038--48655135	18	5.5	19	74	15	68	31	12	11	44	1.77
48654880--48655148	17	14.8	18	68	15	110	33	13	11	42	1.79
48662093--48662118	12	2.2	12	100	0	52	42	7	42	7	1.62
48662843--48662870	5	5.6	5	100	0	56	60	17	0	21	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48664970--48664994	13	1.9	13	100	0	50	56	0	0	44	0.99
48665503--48665799	126	2.4	126	85	4	402	34	17	19	28	1.95
48669488--48669530	18	2.4	18	88	0	59	44	9	27	18	1.80
48671368--48671437	11	6.4	11	77	11	72	44	0	32	22	1.53
48671368--48671437	33	2.1	33	86	5	97	44	0	32	22	1.53
48671372--48671439	22	3.1	21	85	8	84	45	0	30	23	1.53
48672536--48672566	15	2.1	15	93	0	53	9	0	16	74	1.07
48676199--48676224	4	6.5	4	100	0	52	26	0	73	0	0.84
48682345--48682453	47	2.2	50	82	6	134	20	13	30	35	1.91
48683001--48683077	25	3.2	25	80	5	88	19	23	18	38	1.93
48685748--48685795	25	2.0	24	91	4	78	14	25	22	37	1.92
48689487--48689511	11	2.3	11	100	0	50	48	0	8	44	1.32
48701352--48701426	34	2.2	35	88	4	109	44	1	1	53	1.17
48717629--48717678	3	17.3	3	79	8	59	30	0	4	66	1.10
48717632--48717673	18	2.4	18	92	4	68	28	0	4	66	1.12
48725919--48725978	27	2.2	27	80	19	63	68	1	1	28	1.09
48728660--48728710	17	2.9	17	88	2	66	35	7	17	39	1.79
48733196--48733288	39	2.4	39	96	0	168	18	18	21	41	1.90
48733196--48733395	45	4.4	45	79	10	196	19	19	20	41	1.91
48733196--48733395	90	2.2	87	82	10	235	19	19	20	41	1.91
48733239--48733397	51	3.2	51	75	11	177	20	18	20	40	1.91
48757664--48757726	21	3.0	21	75	9	74	19	20	17	42	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48757607--48757732	42	3.0	42	80	3	139	21	20	15	42	1.89
48757620--48757754	42	3.2	42	80	2	128	18	21	17	42	1.90
48759497--48759537	21	1.9	22	90	5	66	29	4	21	43	1.73
48760358--48760388	16	1.9	16	93	0	53	83	3	9	3	0.86
48760382--48761102	205	3.5	201	78	10	780	42	13	14	29	1.83
48760759--48761158	107	3.9	97	81	9	361	44	14	14	27	1.84
48760857--48761158	107	2.8	106	87	2	381	43	14	14	28	1.84
48760381--48761192	205	4.0	203	78	12	640	41	13	14	30	1.84
48766137--48766786	112	5.8	109	82	10	780	31	15	13	39	1.86
48767733--48767802	27	2.5	30	79	11	85	25	11	7	55	1.60
48767736--48767794	26	2.1	29	84	9	79	22	11	8	57	1.61
48768817--48768876	31	1.9	32	86	10	88	53	3	3	40	1.34
48770373--48770438	8	8.0	8	83	11	80	80	0	16	3	0.84
48783277--48783306	4	7.5	4	100	0	60	50	0	26	23	1.50
48786550--48786588	20	2.0	18	85	14	51	48	0	0	51	1.00
48786549--48786595	21	2.2	20	78	17	51	46	0	2	51	1.13
48795316--48795365	17	2.7	20	78	18	70	10	0	44	46	1.37
48799955--48800004	17	2.7	20	78	18	70	10	0	44	46	1.37
48814788--48814935	71	2.0	72	90	5	235	27	10	4	58	1.48
48815039--48815203	83	2.0	83	98	0	321	25	16	9	48	1.76
48817106--48817139	12	2.8	12	81	0	50	44	23	23	8	1.81
48818698--48818741	23	1.9	23	85	0	61	31	9	15	43	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48819791--48819842	22	2.4	22	81	15	63	76	1	17	3	1.02
48821062--48821429	132	2.8	132	86	1	515	31	18	22	26	1.97
48821441--48822294	50	17.0	50	75	3	629	31	21	20	25	1.98
48821436--48822141	101	7.0	101	86	1	916	30	21	21	25	1.98
48821439--48822140	201	3.5	201	86	0	1028	31	21	21	25	1.98
48823105--48823139	18	2.0	18	88	5	54	65	8	14	11	1.46
48829356--48829406	24	2.1	24	82	10	59	35	23	27	13	1.93
48837377--48837467	32	2.8	32	93	0	146	39	24	14	21	1.91
48837704--48837777	37	2.0	37	97	0	139	41	18	17	21	1.90
48850993--48851039	14	3.1	15	81	6	51	61	0	6	31	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185