genome.fa.s5.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  37  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10902438--10902614	27	6.5	27	78	6	144	29	28	15	25	1.96
10904372--10904467	34	2.8	34	82	0	102	35	22	20	20	1.96
10910643--10910730	34	2.6	34	83	3	106	30	20	22	26	1.98
10914296--10914324	12	2.3	13	94	5	51	20	6	6	65	1.40
10937707--10937737	16	1.9	16	93	0	53	29	16	25	29	1.96
10953341--10953450	49	2.2	49	81	0	121	23	17	20	39	1.92
10953862--10953907	19	2.4	20	78	10	51	15	15	23	45	1.84
10954031--10954070	21	2.0	21	95	5	73	32	27	5	35	1.79
10960901--10961110	40	5.3	39	89	4	242	25	21	27	25	1.99
10960848--10961110	120	2.2	120	82	4	309	25	21	27	25	1.99
10960849--10961145	80	3.7	80	81	6	230	26	21	27	24	1.99
10968801--10969023	40	5.6	39	81	8	200	25	21	27	26	1.99
10970826--10970881	20	2.7	21	75	13	62	23	12	1	62	1.39
10970919--10970954	10	3.5	10	88	3	54	16	2	2	77	1.00
10974010--10974243	51	4.6	51	81	3	283	31	26	16	25	1.96
10974006--10974243	102	2.3	102	99	0	467	31	26	16	25	1.96
10974696--10974856	81	2.0	81	96	0	295	30	20	6	42	1.78
10979819--10979912	6	15.7	6	70	0	71	70	4	19	6	1.26
10979819--10979912	18	5.2	18	78	0	98	70	4	19	6	1.26
10992404--10992486	25	3.5	25	65	15	68	65	13	12	9	1.48
10992410--10992498	45	2.0	45	97	0	169	65	11	12	11	1.48
11017855--11018140	143	2.0	143	100	0	572	37	2	11	48	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11018133--11018172	21	2.0	21	85	5	55	35	5	2	57	1.34
11024921--11024945	13	1.9	13	100	0	50	32	0	28	40	1.57
11026019--11026171	41	3.7	41	90	0	225	19	20	26	33	1.96
11026940--11027578	69	9.3	69	91	0	1008	25	9	20	45	1.81
11027267--11027376	22	4.9	22	70	6	85	23	11	20	43	1.85
11033714--11033830	41	2.9	41	90	1	191	19	20	27	32	1.97
11034675--11034778	45	2.3	45	91	1	163	25	7	19	48	1.75
11034679--11034791	45	2.5	44	85	7	120	26	9	19	44	1.82
11034720--11034984	69	3.9	69	90	3	383	25	8	20	45	1.80
11034770--11035013	45	5.4	45	69	13	133	25	8	20	45	1.80
11034640--11034993	23	15.4	23	65	13	158	25	7	20	45	1.78
11037342--11037391	18	2.7	19	77	20	61	38	6	12	44	1.66
11045124--11045249	45	2.8	45	82	0	153	42	12	20	24	1.87
11045920--11045968	22	2.2	21	82	10	62	69	4	4	22	1.23
11058844--11058894	17	3.1	17	80	5	50	7	7	3	80	1.01
11061464--11061522	20	2.8	20	75	17	59	44	8	1	45	1.44
11061496--11061785	148	1.9	151	85	6	403	44	10	4	40	1.59
11061552--11061771	50	4.4	51	71	17	156	45	11	3	40	1.56
11061496--11061785	149	1.9	151	85	5	401	44	10	4	40	1.59
11062584--11062724	42	3.4	42	82	2	185	39	23	17	19	1.93
11062696--11062753	29	2.0	29	93	6	100	34	20	20	24	1.97
11062654--11062795	71	2.0	71	83	0	176	39	23	16	20	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11062725--11063043	42	7.6	42	87	1	415	37	24	17	20	1.94
11062612--11062837	113	2.0	113	100	0	452	38	23	17	20	1.93
11076253--11076545	144	2.0	145	85	7	400	44	10	4	40	1.60
11077150--11077220	35	2.0	35	94	0	124	36	5	22	35	1.78
11077613--11077652	21	1.9	21	85	10	55	55	2	12	30	1.50
11093785--11093822	14	2.7	14	88	8	51	60	0	2	36	1.11
11097025--11097050	12	2.2	12	100	0	52	23	0	7	69	1.14
11097370--11097789	209	2.0	210	91	1	691	28	21	17	32	1.96
11099542--11099725	50	3.7	50	82	6	205	26	22	27	23	2.00
11106149--11106222	35	2.1	35	100	0	148	33	10	14	40	1.81
11106203--11106241	19	2.1	19	95	0	69	28	10	10	51	1.68
11107532--11107563	11	2.9	11	90	0	55	71	6	0	21	1.07
11109681--11109743	18	3.4	18	77	18	58	74	0	19	6	1.02
11110664--11110702	19	2.1	19	90	0	60	28	12	12	46	1.79
11110645--11110759	54	2.1	54	93	0	194	31	12	13	42	1.81
11110718--11110756	19	2.1	19	95	0	69	28	10	10	51	1.68
11114637--11115185	275	2.0	275	97	0	1044	32	20	15	31	1.93
11119516--11119575	9	6.4	9	80	3	57	21	40	3	35	1.70
11125516--11125725	112	1.9	113	88	3	325	40	8	12	39	1.72
11125629--11126042	156	2.6	156	86	6	552	43	4	9	42	1.57
11125629--11126042	157	2.6	156	86	7	552	43	4	9	42	1.57
11126148--11126172	12	2.1	12	100	0	50	52	0	32	16	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11127724--11127762	20	2.0	20	90	10	62	15	23	5	56	1.59
11127977--11128148	49	3.5	49	78	7	222	22	22	22	33	1.98
11127964--11128304	50	6.7	50	74	8	237	23	25	21	29	1.99
11127971--11128192	99	2.2	99	99	0	435	22	24	21	31	1.98
11133616--11133642	13	2.1	13	100	0	54	29	22	33	14	1.94
11143630--11143683	20	2.8	20	80	8	67	81	9	9	0	0.88
11144086--11144222	42	3.3	42	88	2	195	21	17	21	39	1.92
11145120--11145288	53	3.2	53	67	11	155	39	4	12	43	1.63
11145113--11145328	107	2.0	107	90	6	339	43	3	13	39	1.62
11145122--11145288	54	3.1	54	67	10	153	38	4	11	44	1.63
11145565--11145622	21	2.7	21	79	10	64	34	5	13	46	1.66
11145192--11145610	160	2.7	153	84	6	531	43	4	11	40	1.61
11151706--11151792	20	4.3	20	73	17	56	8	32	2	57	1.40
11152736--11152786	22	2.4	21	83	9	59	25	7	1	64	1.31
11165473--11165685	110	1.9	111	81	4	261	42	10	5	40	1.63
11171976--11172021	16	2.9	15	87	6	56	32	4	8	54	1.51
11175026--11175078	20	2.6	20	76	8	54	50	9	18	20	1.74
11175811--11176072	20	13.2	20	77	11	195	57	4	16	20	1.58
11175775--11175834	30	2.1	30	87	12	90	65	5	11	18	1.43
11175742--11175872	68	1.9	67	81	7	158	57	7	15	19	1.62
11175811--11176073	61	4.4	58	73	10	185	57	4	16	20	1.58
11175868--11176074	41	5.1	41	73	10	167	57	3	16	21	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11175811--11176054	100	2.5	99	78	11	234	57	5	16	20	1.58
11175811--11176074	120	2.2	119	83	4	309	57	4	16	20	1.57
11175988--11176055	21	3.3	21	91	6	95	55	4	19	20	1.59
11177246--11177287	9	4.7	9	77	11	50	42	2	2	52	1.27
11178527--11178966	124	3.5	124	95	0	747	32	17	21	29	1.96
11182008--11182058	16	2.8	19	67	27	56	37	0	11	50	1.39
11181975--11182168	102	1.9	102	94	0	343	39	7	8	44	1.63
11182224--11182283	15	4.2	15	76	20	74	23	1	30	45	1.63
11182236--11182289	27	2.0	27	96	0	99	22	1	35	40	1.65
11182259--11182517	21	12.4	21	92	2	425	24	0	30	44	1.57
11182254--11182517	62	4.2	62	90	5	399	24	0	30	43	1.60
11182259--11182517	41	6.2	42	90	4	425	24	0	30	44	1.57
11182547--11182586	7	5.9	7	83	16	57	52	0	0	47	1.00
11182544--11182586	12	3.3	12	78	15	50	53	0	0	46	1.00
11183758--11183783	7	3.7	7	100	0	52	57	15	0	26	1.38
11184937--11184973	11	3.2	12	88	11	60	51	5	16	27	1.66
11184990--11185050	11	5.5	11	82	5	70	45	3	27	22	1.68
11186957--11187102	62	2.3	63	76	2	161	36	14	21	28	1.92
11187085--11187160	21	3.6	21	77	10	66	36	17	21	25	1.94
11187234--11187313	34	2.4	34	81	8	92	45	13	10	31	1.77
11187257--11187396	34	4.1	34	78	9	117	44	12	10	32	1.76
11188592--11188667	34	2.2	34	95	0	134	34	6	14	44	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11188735--11188883	74	2.0	74	93	0	253	24	4	22	48	1.70
11188824--11188850	10	2.7	10	100	0	54	22	0	22	55	1.44
11201983--11202016	15	2.3	15	90	10	52	38	5	17	38	1.74
11206105--11206297	103	1.9	103	97	0	368	33	5	16	45	1.69
11206596--11206837	41	5.9	41	90	0	376	29	19	28	22	1.98
11207012--11207108	34	2.8	36	73	12	92	27	9	20	42	1.83
11215668--11215706	18	2.1	19	90	4	62	53	5	2	38	1.37
11216546--11216593	22	2.2	22	77	3	53	56	4	2	37	1.30
11219437--11219492	25	2.2	26	79	17	73	62	1	1	33	1.16
11219601--11219642	21	2.0	20	86	13	59	21	9	47	21	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185