genome.fa.s5.2.7.7.80.10.50.1000.127.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  127  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39030898--39030930	17	2.0	17	88	5	50	57	9	0	33	1.30
39041735--39041814	31	2.5	31	84	8	90	48	2	13	35	1.56
39056836--39056870	15	2.4	15	90	4	54	48	0	8	42	1.33
39060731--39060807	7	11.0	7	76	19	72	22	5	0	72	1.04
39060773--39060806	12	2.8	12	87	12	52	23	5	0	70	1.09
39061511--39061702	101	1.9	101	80	7	228	31	14	23	30	1.94
39061690--39061735	4	11.8	4	78	21	53	76	2	0	21	0.90
39061686--39061731	24	2.0	24	91	4	76	76	2	0	21	0.90
39061686--39061735	16	3.1	17	82	8	68	76	2	0	22	0.89
39061690--39061752	28	2.3	27	83	8	81	74	1	3	20	1.04
39066491--39066545	23	2.4	23	87	0	74	25	14	32	27	1.95
39070368--39070402	18	1.9	18	94	0	61	31	2	8	57	1.44
39072930--39072987	29	2.1	29	83	6	75	51	3	0	44	1.18
39072948--39072995	13	3.5	14	79	20	57	56	0	0	43	0.99
39094125--39094217	44	2.1	44	86	4	125	45	13	17	23	1.84
39094135--39094231	44	2.2	44	81	3	106	43	14	21	20	1.87
39094238--39094469	50	4.7	51	80	5	253	28	21	29	20	1.98
39096085--39096135	16	3.1	17	78	18	63	1	27	0	70	0.98
39097348--39097383	6	6.0	6	100	0	72	66	0	16	16	1.25
39111590--39111663	17	4.5	16	71	19	55	50	1	0	48	1.09
39111597--39111668	36	2.0	36	97	0	135	43	2	0	54	1.15
39111610--39111664	19	3.0	19	70	25	55	45	1	0	52	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39111775--39111818	16	2.6	16	79	10	52	47	4	0	47	1.22
39117583--39117690	44	2.4	44	87	3	144	29	23	13	33	1.93
39133705--39133814	42	2.6	42	82	4	107	18	20	17	43	1.88
39137306--39137425	61	2.0	61	98	0	231	37	5	25	31	1.78
39144819--39144877	29	2.0	30	83	3	75	50	11	5	32	1.61
39150860--39150894	3	11.7	3	93	0	61	65	0	0	34	0.93
39152444--39152532	39	2.2	40	86	5	119	57	1	2	39	1.19
39153932--39153995	27	2.4	27	83	0	74	28	32	31	7	1.85
39154137--39154198	20	3.2	19	76	19	56	67	0	29	3	1.06
39154509--39154607	40	2.5	38	81	15	119	32	4	9	54	1.51
39154384--39154615	76	2.9	78	75	11	229	33	5	11	49	1.61
39159362--39159743	157	2.4	158	91	2	617	30	7	7	55	1.53
39161903--39161939	17	2.2	16	90	4	56	8	8	5	78	1.09
39161383--39161917	157	3.4	157	89	1	811	28	7	9	54	1.59
39161854--39161970	50	2.3	50	79	5	128	20	7	6	64	1.42
39161941--39162082	69	2.1	69	93	4	243	38	9	5	46	1.61
39162166--39162198	12	2.8	12	95	0	57	69	6	0	24	1.10
39162545--39162589	3	16.0	3	77	13	51	4	28	0	66	1.11
39162545--39162589	8	5.3	9	76	15	51	4	28	0	66	1.11
39163297--39163412	3	39.3	3	68	16	55	61	1	36	0	1.12
39163309--39163353	18	2.4	19	85	7	65	66	0	33	0	0.92
39163641--39163691	16	3.3	16	71	20	54	25	7	11	54	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39163631--39163748	30	4.2	29	74	19	126	23	5	8	61	1.46
39163699--39163761	14	4.5	14	77	13	67	22	3	6	68	1.27
39163657--39163756	51	1.9	52	93	2	175	24	5	8	63	1.42
39163914--39164452	156	3.4	157	91	3	832	54	8	8	28	1.60
39164264--39164641	191	2.0	195	94	2	665	54	8	7	28	1.59
39169708--39169849	76	1.9	76	86	2	205	52	11	4	30	1.59
39170083--39170136	20	2.8	20	76	18	60	1	27	0	70	0.98
39173788--39173853	32	2.1	32	100	0	132	15	12	15	57	1.65
39178876--39178923	20	2.4	20	89	0	69	33	14	20	31	1.93
39181782--39181813	16	1.9	17	93	6	57	75	3	18	3	1.08
39182714--39182769	25	2.2	25	87	0	76	17	26	21	33	1.96
39193896--39193945	12	4.2	12	84	0	55	24	2	8	66	1.29
39193914--39193945	3	10.7	3	93	0	55	31	3	0	65	1.08
39203122--39203146	12	2.1	12	100	0	50	24	36	24	16	1.94
39203304--39203367	9	7.2	9	89	3	85	39	26	10	23	1.88
39203304--39203367	18	3.6	18	85	4	94	39	26	10	23	1.88
39204524--39204563	3	13.3	3	100	0	80	0	32	0	67	0.91
39212213--39212258	22	2.1	22	88	8	67	41	4	13	41	1.63
39213318--39213359	4	10.5	4	100	0	84	76	0	23	0	0.79
39215045--39215105	22	2.8	22	85	2	70	65	1	1	31	1.12
39215078--39215125	15	3.3	14	80	8	60	58	0	4	37	1.18
39220849--39221799	95	10.0	95	99	0	1893	26	18	12	42	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39224997--39225067	35	2.0	35	97	0	133	15	29	18	36	1.92
39231225--39231268	22	2.2	20	84	12	54	47	11	15	25	1.79
39237608--39237678	29	2.4	29	85	4	88	23	14	14	47	1.80
39237628--39237704	29	2.6	29	83	4	82	25	12	14	46	1.80
39238267--39238335	29	2.3	29	85	5	84	47	15	14	21	1.81
39250415--39250453	18	2.0	20	85	9	55	41	2	0	56	1.13
39257486--39257517	16	2.0	16	93	0	55	18	9	34	37	1.83
39266475--39266522	19	2.5	19	80	10	53	58	2	16	22	1.49
39269221--39269254	17	2.0	17	94	0	59	47	23	2	26	1.66
39285789--39285846	26	2.2	26	90	0	89	36	22	5	36	1.77
39306916--39306955	14	2.9	14	96	3	73	60	20	15	5	1.53
39328406--39328443	18	2.1	18	90	0	58	44	13	7	34	1.72
39330240--39330270	14	2.2	14	94	0	53	45	0	19	35	1.51
39335250--39335318	21	3.4	21	71	15	72	36	1	7	55	1.37
39335305--39335335	15	2.1	14	94	5	53	35	3	6	54	1.42
39336832--39336874	22	2.0	22	100	0	86	51	6	18	23	1.70
39338384--39338412	14	2.1	14	100	0	58	34	20	6	37	1.80
39339942--39339973	16	2.0	16	100	0	64	18	6	12	62	1.50
39340292--39340342	20	2.5	20	75	15	59	35	0	19	45	1.51
39340483--39340523	20	2.0	22	90	9	68	48	0	0	51	1.00
39340597--39340653	13	3.9	14	76	19	55	43	0	1	54	1.10
39340663--39340709	19	2.5	19	86	6	69	72	4	14	8	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39340663--39340717	19	2.9	19	83	5	58	70	5	14	9	1.30
39342086--39342176	18	5.1	18	75	0	83	32	10	18	37	1.86
39342164--39342227	28	2.3	28	100	0	128	45	6	15	32	1.71
39346409--39346452	19	2.4	19	85	7	56	50	0	9	40	1.34
39349903--39349946	19	2.4	19	85	7	56	50	0	9	40	1.34
39351781--39351811	8	3.9	8	91	0	53	48	25	22	3	1.66
39357857--39357920	29	2.1	31	83	11	80	60	3	0	35	1.12
39357847--39357879	8	4.1	8	100	0	66	75	0	0	24	0.80
39359921--39359958	16	2.3	17	95	4	69	42	0	0	57	0.98
39359966--39360028	20	3.2	20	76	17	69	52	0	0	47	1.00
39362250--39362292	22	2.0	21	81	4	50	30	9	4	55	1.52
39365436--39365531	24	4.0	24	91	0	66	8	16	38	36	1.79
39365449--39365543	24	4.0	24	97	0	163	10	13	42	33	1.79
39365461--39365573	48	2.4	48	86	0	145	13	13	44	29	1.81
39365530--39365579	24	2.1	24	96	0	91	18	20	46	16	1.85
39369582--39369613	13	2.5	13	100	0	64	34	0	28	37	1.57
39370607--39370633	2	13.5	2	100	0	54	51	48	0	0	1.00
39372355--39372652	161	1.9	156	86	4	418	46	18	10	24	1.79
39377359--39377396	3	12.7	3	94	0	58	63	0	31	5	1.17
39385900--39385987	39	2.2	40	87	2	124	23	21	28	26	1.99
39391205--39391360	51	3.1	51	99	0	303	39	25	7	27	1.83
39391714--39391744	16	2.0	15	100	0	53	12	25	19	38	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39394220--39394251	3	10.7	3	100	0	64	68	0	31	0	0.90
39394668--39394694	3	9.0	3	100	0	54	33	0	0	66	0.92
39397388--39397420	17	1.9	17	93	0	57	48	0	0	51	1.00
39404389--39404437	25	2.0	25	87	0	71	30	12	14	42	1.82
39404274--39404440	74	2.3	73	80	9	171	34	9	11	43	1.74
39406111--39406312	87	2.3	88	81	0	235	35	18	20	25	1.95
39413258--39413362	53	2.0	53	83	7	133	22	23	16	37	1.94
39415456--39415483	13	2.2	13	100	0	56	50	14	0	35	1.43
39416871--39417097	46	4.9	46	90	3	307	21	22	13	43	1.87
39419222--39419273	11	4.5	11	81	9	68	65	0	0	34	0.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185