genome.fa.s5.2.7.7.80.10.50.1000.136.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  136  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41680107--41680375	98	2.7	98	93	0	457	28	22	14	34	1.93
41684434--41684488	27	2.1	26	86	10	76	23	10	23	41	1.86
41684434--41684480	9	5.3	9	94	2	78	21	12	23	42	1.87
41684648--41684672	12	2.1	12	100	0	50	16	24	36	24	1.94
41698993--41699038	12	4.0	12	78	18	53	71	0	2	26	0.97
41699016--41699078	27	2.3	26	81	10	74	65	0	1	33	1.03
41702439--41702488	26	2.0	26	88	4	75	52	6	0	42	1.26
41704389--41704435	16	2.9	17	75	6	53	27	29	2	40	1.68
41705228--41705276	26	1.9	25	91	4	80	0	30	16	53	1.43
41705228--41705290	33	2.0	33	87	6	94	1	28	19	50	1.56
41708277--41708311	3	11.7	3	100	0	70	68	0	0	31	0.90
41709482--41709559	28	2.9	26	74	12	77	33	3	3	58	1.34
41709502--41709541	21	2.0	21	85	9	57	32	2	2	62	1.22
41712953--41713008	2	28.0	2	96	0	103	50	1	48	0	1.11
41715756--41715841	42	2.0	42	88	4	129	22	19	23	34	1.96
41716169--41716236	21	3.2	21	82	0	82	4	41	19	35	1.71
41721505--41721777	9	31.4	9	72	14	216	31	1	21	45	1.59
41721494--41721598	25	4.2	25	81	11	133	33	1	20	44	1.62
41721509--41721776	34	8.0	34	73	17	190	30	1	21	46	1.59
41721570--41721687	62	1.9	61	87	6	175	31	0	21	46	1.57
41721698--41721767	25	2.8	25	93	0	113	27	0	22	50	1.50
41721793--41721841	26	1.9	26	87	4	73	38	2	6	53	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41721837--41721866	6	5.0	6	100	0	60	83	0	0	16	0.65
41722782--41722865	31	2.7	31	92	1	134	42	22	15	19	1.88
41724298--41725689	696	2.0	696	99	0	2775	38	14	13	33	1.86
41725802--41725887	38	2.2	39	85	8	113	37	38	2	22	1.67
41726027--41726071	21	2.1	21	91	0	72	42	35	4	17	1.70
41726344--41726373	14	2.1	14	93	0	51	36	46	0	16	1.47
41726750--41727061	112	2.8	114	78	5	346	26	23	22	27	1.99
41726850--41727188	186	1.8	183	83	8	445	26	24	22	26	2.00
41727035--41727239	113	1.8	113	83	6	272	26	23	23	26	2.00
41740538--41740577	19	2.2	19	86	4	55	72	0	20	7	1.08
41740537--41740577	18	2.2	20	78	13	50	73	0	19	7	1.07
41741162--41741214	25	2.1	25	89	6	81	26	22	18	32	1.97
41748182--41748544	199	1.8	199	85	0	519	36	13	20	28	1.91
41750646--41750705	30	2.0	31	86	3	86	40	0	38	21	1.54
41750919--41750955	9	4.1	9	85	0	56	32	10	10	45	1.74
41755103--41755155	16	3.3	16	76	10	63	35	24	5	33	1.79
41757922--41757948	3	9.0	3	100	0	54	66	0	0	33	0.92
41760826--41760896	35	2.0	35	100	0	142	43	8	19	28	1.80
41772100--41772245	73	2.0	73	98	0	283	43	10	8	36	1.71
41793590--41793684	37	2.5	37	84	5	120	38	17	17	25	1.92
41794431--41794568	72	2.0	68	85	8	188	50	5	3	41	1.42
41799282--41799372	21	4.3	21	75	5	85	15	21	16	46	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41802249--41802367	52	2.3	52	86	9	165	42	5	22	29	1.77
41803273--41803318	22	2.1	22	84	8	58	52	13	6	28	1.65
41805737--41805785	18	2.7	18	87	0	80	16	38	26	18	1.91
41805737--41805821	36	2.5	32	81	7	98	14	35	27	23	1.93
41809969--41810007	20	2.0	20	90	10	62	15	23	5	56	1.59
41812432--41812474	21	2.0	21	90	0	68	13	16	25	44	1.85
41812565--41812684	62	2.0	61	84	1	159	31	23	23	21	1.98
41812627--41812813	42	4.3	43	78	7	157	31	28	17	22	1.97
41812632--41812769	44	3.2	43	84	4	170	28	28	18	23	1.98
41812833--41812869	18	2.0	19	89	5	58	37	0	0	62	0.96
41813845--41813875	16	1.9	16	100	0	62	38	12	12	35	1.82
41814859--41814898	21	2.0	21	90	5	64	37	0	5	57	1.21
41817022--41817216	41	4.8	40	79	9	216	31	25	18	23	1.98
41817026--41817216	80	2.4	82	80	5	235	32	25	18	23	1.97
41817272--41817391	39	3.1	38	78	7	125	23	20	19	37	1.94
41829223--41829276	23	2.3	23	83	0	63	62	0	0	37	0.95
41836783--41836815	15	2.3	15	89	5	50	75	0	6	18	1.00
41839154--41839223	33	2.1	33	83	0	86	44	18	4	32	1.69
41839265--41839345	41	2.0	42	87	2	119	23	27	22	27	1.99
41841055--41841512	51	9.8	49	74	12	285	29	18	17	34	1.94
41841026--41841512	44	10.5	45	76	10	362	29	18	18	34	1.94
41841116--41841512	96	4.3	95	80	8	392	28	19	17	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41841150--41841512	89	4.0	88	82	8	349	28	19	17	34	1.95
41842069--41842129	11	5.7	11	73	13	56	59	0	1	39	1.08
41842082--41842118	19	1.9	19	100	0	74	67	0	0	32	0.91
41842076--41842136	30	2.0	30	87	0	86	63	0	1	34	1.04
41846289--41846460	85	2.0	85	95	0	308	42	20	16	20	1.89
41846623--41846652	13	2.3	13	100	0	60	40	43	0	16	1.48
41846792--41846859	9	7.4	9	82	9	84	23	10	26	39	1.87
41847019--41847043	12	2.1	12	100	0	50	16	24	36	24	1.94
41849421--41849454	16	2.2	15	94	5	59	64	0	8	26	1.22
41855986--41856026	17	2.3	19	79	8	50	70	0	4	24	1.06
41857191--41857252	30	2.0	31	84	3	81	20	46	0	32	1.51
41860368--41860420	20	2.7	20	81	0	70	47	11	9	32	1.71
41860473--41860506	18	1.9	18	94	5	61	61	2	5	29	1.34
41861854--41861891	18	2.2	18	85	4	51	44	5	0	50	1.24
41866618--41866657	21	1.9	21	94	0	71	25	12	10	52	1.70
41874940--41874986	24	2.0	24	87	8	69	48	6	6	38	1.54
41874952--41875002	24	2.1	24	81	0	57	50	5	3	39	1.45
41877117--41877182	24	2.8	24	88	4	73	22	6	22	48	1.72
41877127--41877182	24	2.4	24	90	3	96	26	3	25	44	1.70
41877584--41877630	23	2.0	23	83	0	58	61	8	0	29	1.25
41887530--41887579	25	2.0	25	96	0	91	24	18	16	42	1.89
41892920--41892957	19	2.0	19	89	0	58	39	7	13	39	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41906013--41906044	15	2.1	15	100	0	64	34	18	18	28	1.95
41911707--41911732	3	8.7	3	100	0	52	69	0	0	30	0.89
41920062--41920101	20	2.0	20	90	9	64	25	17	27	30	1.97
41920198--41920347	81	1.9	81	100	0	300	30	18	18	34	1.94
41920348--41920384	3	12.3	3	100	0	74	0	32	0	67	0.91
41920906--41920972	3	23.3	3	76	8	59	2	29	0	67	1.06
41922298--41922340	18	2.4	16	82	17	50	41	13	0	44	1.44
41923295--41923328	17	1.9	18	94	5	61	17	44	26	11	1.83
41926013--41926066	20	2.7	21	78	16	53	27	18	37	16	1.93
41927790--41927848	31	1.9	31	89	0	91	49	3	1	45	1.28
41932187--41932219	17	2.0	17	88	5	50	51	6	0	42	1.26
41933550--41933577	9	3.1	9	100	0	56	57	10	0	32	1.33
41933520--41933729	68	3.1	68	97	1	397	46	9	4	40	1.55
41933618--41933645	9	3.1	9	100	0	56	57	10	0	32	1.33
41933718--41933759	16	2.6	16	92	0	66	42	7	2	47	1.43
41933733--41933793	22	2.8	22	84	0	77	47	1	1	49	1.21
41939653--41939801	37	4.0	37	92	0	244	37	14	20	26	1.92
41939617--41939847	74	2.9	78	82	11	272	35	13	22	28	1.92
41939764--41939887	46	2.8	46	90	3	191	33	16	21	28	1.95
41959813--41959850	13	3.0	13	84	3	51	63	0	2	34	1.09
41960292--41960339	25	2.0	24	84	12	62	33	2	0	64	1.05
41960523--41960568	16	2.8	16	80	3	56	23	4	4	67	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41960611--41960641	16	1.9	16	93	0	53	45	3	0	51	1.17
41968079--41968197	51	2.4	51	88	1	177	56	5	1	36	1.31
41974893--41975008	58	2.0	58	98	0	223	62	0	12	25	1.31
41975433--41975472	21	1.9	21	89	0	62	37	25	10	27	1.88
41975629--41975684	22	2.5	22	85	5	69	21	1	32	44	1.63
41977451--41977503	17	3.1	17	80	0	61	20	16	7	54	1.66
41979538--41979605	30	2.3	30	84	5	84	47	5	19	27	1.72
41982037--41982172	46	3.0	46	89	2	184	38	14	24	22	1.91
41984573--41984621	17	2.9	17	84	0	71	28	18	4	48	1.66
41991203--41991260	30	1.9	30	86	6	82	41	6	24	27	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185