genome.fa.s5.2.7.7.80.10.50.1000.173.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  173  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51920641--51920675	6	5.7	6	89	3	52	62	0	2	34	1.10
51928951--51928980	3	10.0	3	92	0	51	30	0	3	66	1.07
51929060--51929111	26	2.0	26	84	0	68	23	0	1	75	0.91
51930778--51930835	29	2.0	28	93	3	98	68	0	1	29	0.99
51930799--51930840	21	2.0	21	85	4	57	66	0	2	30	1.04
51933510--51933560	15	3.5	15	81	13	70	29	9	0	60	1.28
51945400--51945426	14	1.9	14	100	0	54	22	3	0	74	0.98
51945431--51945481	15	3.5	15	81	13	70	29	9	0	60	1.28
51948291--51948337	24	2.0	24	95	0	85	21	12	25	40	1.89
51951533--51951577	20	2.3	19	84	7	54	62	0	0	37	0.96
51957866--51957895	2	15.0	2	100	0	60	0	50	0	50	1.00
51963979--51964039	20	3.1	19	71	15	52	67	4	3	24	1.26
51964277--51964311	18	1.9	18	88	0	52	45	11	5	37	1.64
51970676--51970703	14	2.0	14	100	0	56	7	42	7	42	1.59
51970748--51970774	5	5.4	5	100	0	54	0	18	0	81	0.69
51971389--51971420	17	1.9	16	93	6	55	15	9	0	75	1.05
51974159--51974218	21	3.0	21	88	7	90	36	0	1	61	1.06
51974182--51974226	21	2.1	21	87	0	63	44	0	0	55	0.99
51977427--51977889	109	4.1	110	84	5	554	40	14	16	28	1.87
51977884--51978276	107	3.8	102	83	9	446	25	17	15	40	1.89
51977878--51978276	110	3.8	104	83	8	462	26	17	15	40	1.89
51977956--51978264	93	3.1	97	82	11	313	26	17	15	39	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51981219--51981374	77	2.0	77	81	9	183	17	18	15	48	1.82
51990960--51990988	14	2.1	14	93	6	51	48	0	6	44	1.29
51993556--51993630	31	2.5	30	84	2	96	49	13	16	21	1.79
52004394--52004418	12	2.1	12	100	0	50	16	40	8	36	1.77
52021033--52021111	30	2.7	30	88	5	117	29	5	16	49	1.67
52021371--52021443	30	2.4	30	84	8	87	67	1	5	26	1.21
52021390--52021450	20	3.1	19	73	17	52	65	1	3	29	1.18
52021833--52021872	20	2.0	20	100	0	80	55	0	5	40	1.22
52023515--52023544	2	15.0	2	100	0	60	50	50	0	0	1.00
52026623--52026681	29	2.2	26	81	9	64	28	15	11	44	1.82
52064236--52064275	14	2.9	14	84	0	53	32	7	17	42	1.77
52064259--52064298	20	2.0	20	90	0	62	27	10	12	50	1.72
52064244--52064310	34	1.9	35	90	3	109	31	8	13	46	1.74
52067107--52067159	18	2.9	18	77	0	70	39	3	41	15	1.65
52083423--52083519	31	3.2	30	80	11	99	23	15	13	47	1.81
52092869--52092912	23	1.9	23	100	0	88	52	4	11	31	1.57
52094175--52094681	253	2.0	253	100	0	1014	22	23	31	22	1.99
52105679--52105792	33	3.6	32	75	14	112	25	14	11	48	1.78
52105738--52105800	33	1.9	33	90	0	99	25	19	7	47	1.76
52105738--52105813	33	2.4	32	84	4	82	26	18	9	46	1.79
52106247--52106396	59	2.5	57	84	7	185	50	12	14	23	1.76
52106868--52106897	15	2.0	15	93	0	51	23	0	3	73	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52107291--52107327	19	1.9	19	88	0	56	48	0	0	51	1.00
52112695--52112761	30	2.3	29	84	10	91	28	2	7	61	1.38
52114065--52114100	16	2.2	17	90	5	56	25	0	2	72	0.98
52114075--52114116	19	2.2	19	83	8	50	30	0	2	66	1.04
52115771--52115834	25	2.6	25	82	7	78	43	9	0	46	1.35
52115908--52115966	30	2.0	30	82	0	73	40	3	3	52	1.35
52115987--52116034	17	2.9	17	85	11	57	39	8	2	50	1.44
52127684--52128250	45	12.8	45	76	5	456	32	18	22	26	1.97
52127684--52128250	90	6.4	90	78	7	541	32	18	22	26	1.97
52129968--52130003	17	2.1	17	90	10	56	36	8	0	55	1.30
52131308--52131400	39	2.3	40	83	5	125	39	4	5	50	1.45
52133132--52133180	8	5.7	9	75	15	50	34	0	2	63	1.06
52166252--52166327	32	2.4	32	80	12	102	34	6	5	53	1.49
52167369--52167419	18	2.8	19	88	5	72	39	0	47	13	1.43
52167381--52167415	6	5.8	6	100	0	70	34	0	48	17	1.47
52172261--52172302	18	2.3	18	84	8	59	40	2	0	57	1.12
52175714--52175743	14	2.1	14	93	0	51	33	10	0	56	1.32
52185373--52185449	38	2.0	38	87	7	111	38	7	1	51	1.39
52198558--52198713	46	3.5	46	92	2	255	28	24	14	33	1.94
52198946--52199225	140	2.0	140	92	1	472	29	19	7	42	1.79
52199353--52199395	20	2.2	20	100	0	86	39	25	9	25	1.85
52215952--52216148	66	3.0	66	95	0	340	27	31	20	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52216275--52216382	57	1.9	56	88	1	162	25	27	18	28	1.98
52217001--52217028	14	2.0	14	100	0	56	35	35	7	21	1.81
52218721--52218785	30	2.2	29	81	8	76	30	27	6	35	1.81
52218728--52218785	30	1.9	30	85	0	80	31	24	6	37	1.82
52221501--52221779	46	6.0	46	92	2	427	29	21	9	40	1.84
52221860--52221923	31	2.1	31	96	0	119	34	12	7	45	1.71
52225441--52227053	382	4.4	364	91	4	2401	25	19	18	37	1.93
52226339--52226382	3	14.7	3	95	0	79	29	2	0	68	1.02
52226721--52226764	3	14.7	3	95	0	79	31	2	0	65	1.05
52240658--52240752	3	31.7	3	97	0	181	31	0	1	67	0.98
52241091--52241131	3	13.7	3	94	0	73	29	0	2	68	1.03
52241453--52241505	3	17.7	3	100	0	106	32	0	0	67	0.91
52240895--52242216	374	3.6	372	89	6	1829	24	18	17	38	1.92
52241826--52241851	3	8.7	3	100	0	52	30	0	0	69	0.89
52240700--52242216	737	2.0	726	91	6	2425	25	17	17	39	1.92
52242190--52242216	3	9.0	3	100	0	54	33	0	0	66	0.92
52242580--52242618	18	2.2	18	90	0	60	30	10	20	38	1.86
52246012--52246136	43	2.9	43	79	11	148	32	30	19	18	1.95
52246145--52246346	98	2.1	98	97	0	379	32	22	13	30	1.93
52246882--52246923	21	2.0	21	95	0	75	35	23	7	33	1.82
52246886--52246935	21	2.3	21	86	3	64	40	24	6	30	1.79
52248670--52248712	22	2.0	21	82	8	52	51	6	4	37	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52248953--52248996	22	2.0	23	86	8	65	40	9	6	43	1.63
52250430--52250460	2	15.5	2	100	0	62	0	0	48	51	1.00
52252803--52252870	33	2.1	33	83	5	84	30	16	11	41	1.84
52257624--52257649	7	3.7	7	100	0	52	73	0	26	0	0.84
52271610--52271650	21	2.0	21	81	18	50	31	19	26	21	1.97
52274375--52274435	31	2.0	31	96	0	113	34	6	26	32	1.82
52274527--52274556	4	7.5	4	100	0	60	50	0	0	50	1.00
52276155--52276209	17	3.2	16	78	14	56	38	0	14	47	1.45
52276696--52276783	21	4.1	21	75	5	79	17	26	14	42	1.87
52276696--52276800	42	2.5	42	84	7	133	16	25	15	42	1.87
52281648--52281690	17	2.5	18	81	11	54	16	6	0	76	0.99
52283689--52283739	23	2.2	23	82	0	57	49	17	25	7	1.74
52284499--52284695	98	2.0	98	94	0	349	24	19	16	39	1.92
52301434--52301517	43	2.0	41	84	9	107	75	1	3	20	1.03
52323257--52323290	17	2.0	17	94	0	59	44	50	0	5	1.26
52327896--52327929	17	2.0	17	94	0	59	44	50	0	5	1.26
52329912--52329970	21	2.8	22	78	14	63	33	33	11	20	1.89
52329999--52330034	18	1.9	19	88	5	56	22	8	25	44	1.80
52332694--52332733	4	10.0	4	100	0	80	25	50	0	25	1.50
52338043--52338351	36	8.0	36	80	13	348	36	12	20	29	1.90
52338007--52338377	82	4.7	81	80	15	418	36	13	20	29	1.91
52338043--52338377	118	2.8	118	96	0	609	36	13	20	29	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52349083--52349148	25	2.5	28	79	15	72	43	3	0	53	1.16
52349112--52349148	5	7.4	5	100	0	74	40	0	0	59	0.97
52350100--52350233	40	3.4	40	75	9	141	26	17	23	31	1.97
52353008--52353032	10	2.5	10	100	0	50	36	0	0	64	0.94
52356308--52356333	2	13.0	2	100	0	52	50	0	50	0	1.00
52356519--52356551	2	16.5	2	93	0	57	51	0	48	0	1.00
52357860--52357901	22	2.0	22	85	4	59	28	7	2	61	1.35
52367316--52367354	6	6.5	6	96	0	69	12	0	30	56	1.37
52380523--52380558	16	2.1	18	90	10	58	44	0	0	55	0.99
52387242--52387270	11	2.5	12	88	11	51	27	0	0	72	0.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185