genome.fa.s5.2.7.7.80.10.50.1000.183.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  183  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55853824--55853922	33	2.9	33	89	8	139	39	0	2	58	1.10
55853844--55853895	12	4.6	11	75	20	54	34	0	1	63	1.06
55853818--55853946	22	5.9	21	69	19	93	41	0	1	57	1.08
55853884--55853949	20	3.2	20	80	18	73	45	0	1	53	1.09
55853854--55854160	137	2.3	136	81	7	358	38	2	2	56	1.24
55854015--55854069	21	2.7	20	83	5	74	32	1	1	63	1.15
55854051--55854083	14	2.3	15	94	5	59	42	0	0	57	0.98
55854049--55854104	24	2.3	24	84	9	69	42	0	0	57	0.99
55854129--55854187	18	2.8	20	80	19	68	40	0	0	59	0.97
55854157--55854206	12	3.7	13	76	23	50	48	0	0	52	1.00
55854245--55854295	11	4.5	11	75	22	52	66	5	0	27	1.14
55854371--55854456	19	4.6	19	73	16	90	58	1	0	40	1.06
55854384--55854408	13	1.9	13	100	0	50	60	0	0	40	0.97
55854371--55854466	20	5.0	20	76	22	91	58	1	0	40	1.05
55854420--55854466	21	2.1	23	92	7	80	57	2	0	40	1.11
55854385--55854468	35	2.5	35	78	19	106	59	1	0	39	1.05
55854544--55854608	10	6.9	9	70	16	51	76	3	10	9	1.11
55854526--55854608	29	2.9	30	81	13	86	74	4	10	9	1.20
55856064--55856108	11	3.9	11	80	11	54	35	0	2	62	1.08
55858272--55859223	46	20.7	46	98	0	1744	37	13	23	25	1.91
55861757--55861983	40	5.7	40	96	0	393	26	29	20	23	1.99
55861755--55862059	40	7.7	40	88	5	368	26	28	20	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55861991--55862068	40	1.9	41	82	10	97	26	28	21	23	1.99
55869126--55869177	25	2.1	25	88	0	77	38	5	15	40	1.71
55869487--55869541	27	2.0	27	100	0	110	38	3	18	40	1.68
55869802--55869906	52	2.0	52	96	0	192	38	8	14	39	1.77
55870947--55870971	13	1.9	13	100	0	50	8	36	32	24	1.84
55884261--55884411	45	3.4	45	80	2	162	20	22	13	43	1.86
55884278--55884405	44	2.9	45	86	1	177	21	21	14	43	1.87
55884899--55884939	5	8.4	5	89	5	66	80	0	2	17	0.82
55884899--55884935	14	2.6	14	91	4	56	81	0	2	16	0.81
55889358--55889397	5	8.4	5	86	10	57	82	0	2	15	0.77
55889358--55889397	9	4.2	10	81	12	57	82	0	2	15	0.77
55889478--55889551	38	1.9	38	97	0	139	37	9	18	33	1.84
55893810--55893874	23	2.9	23	83	2	78	18	29	20	32	1.96
55896906--55896939	5	7.0	5	86	6	52	61	0	0	38	0.96
55896906--55896939	14	2.4	14	90	5	50	61	0	0	38	0.96
55899298--55899383	42	2.0	42	82	8	104	34	2	19	43	1.64
55908052--55908086	17	2.0	18	88	5	54	22	25	14	37	1.92
55909885--55909932	14	3.3	14	77	8	51	50	10	8	31	1.66
55913367--55913392	11	2.4	11	100	0	52	34	15	11	38	1.83
55916133--55916358	113	2.0	113	100	0	452	32	20	18	28	1.96
55916337--55916465	45	2.9	45	88	0	195	24	19	15	40	1.90
55916579--55916610	16	2.0	16	100	0	64	50	25	12	12	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55917617--55917678	29	2.1	29	93	0	106	37	22	9	30	1.86
55919550--55919584	17	2.1	17	89	5	54	57	0	28	14	1.38
55926475--55926551	31	2.5	31	86	0	109	28	18	28	24	1.98
55926542--55926784	130	1.9	129	92	0	405	28	17	26	27	1.97
55926756--55926870	42	2.7	43	86	4	162	31	14	26	27	1.95
55931633--55931663	8	3.9	8	100	0	62	64	9	12	12	1.50
55938761--55938805	11	3.9	11	80	11	54	35	0	0	64	0.94
55938756--55938811	24	2.3	24	87	3	76	37	0	1	60	1.07
55942383--55942934	104	5.3	104	80	5	512	33	13	20	32	1.92
55942375--55942928	207	2.7	207	80	6	613	33	13	20	32	1.91
55942875--55942952	37	2.1	37	88	4	113	30	8	24	35	1.86
55947196--55947235	20	2.0	21	85	5	55	20	22	17	40	1.92
55954066--55954133	24	3.0	22	79	14	75	51	11	0	36	1.39
55954067--55954110	22	2.0	21	91	4	70	52	11	0	36	1.38
55954161--55954190	15	1.9	16	93	6	53	56	6	0	36	1.26
55954611--55954659	22	2.2	22	78	14	55	42	0	2	55	1.11
55954629--55954669	21	1.9	22	90	5	66	46	0	0	53	1.00
55954810--55954891	19	4.5	19	71	11	64	69	4	18	7	1.30
55955833--55955878	21	2.2	21	88	0	65	26	15	21	36	1.93
55956297--55956355	31	1.9	31	96	0	109	13	16	32	37	1.88
55957682--55957734	19	2.7	21	80	14	67	15	9	0	75	1.04
55958410--55958445	15	2.4	14	86	13	54	38	2	2	55	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55958759--55958821	17	3.5	17	72	10	54	30	6	6	57	1.49
55959162--55959197	15	2.4	14	86	13	54	30	5	0	63	1.17
55959406--55959459	3	18.3	3	78	17	60	33	3	0	62	1.12
55960442--55960519	40	2.0	39	85	7	104	62	7	2	26	1.35
55961198--55961289	46	2.0	46	91	4	150	35	16	14	33	1.88
55963835--55963874	20	2.0	20	100	0	80	30	15	10	45	1.78
55968767--55968813	14	3.4	14	75	16	53	34	0	4	61	1.15
55968769--55968813	15	3.2	15	75	18	60	35	0	4	60	1.17
55968761--55968822	27	2.3	27	91	2	99	30	1	3	64	1.19
55974489--55974592	51	2.0	51	96	0	190	26	24	14	34	1.94
55989196--55989235	20	2.0	20	85	0	53	30	7	20	42	1.79
55994115--55994226	46	2.5	46	86	4	158	28	13	18	39	1.89
55997845--55997920	37	2.1	37	100	0	152	19	13	17	50	1.78
56000734--56000800	33	2.0	33	100	0	134	52	8	17	20	1.72
56004305--56004345	20	2.0	20	100	0	82	29	14	4	51	1.63
56009386--56009442	28	2.0	28	89	0	87	28	15	7	49	1.71
56023963--56023996	14	2.5	13	81	9	50	67	14	0	17	1.23
56026227--56026319	6	15.5	6	83	6	91	75	3	5	16	1.12
56027981--56028032	25	1.9	28	81	14	65	73	0	5	21	1.04
56028688--56028732	20	2.2	20	96	0	81	17	40	24	17	1.91
56028688--56028739	20	2.6	20	90	0	68	17	34	26	21	1.95
56031900--56031943	22	2.0	22	90	0	70	68	0	2	29	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56036064--56036169	42	2.5	42	86	8	153	36	11	23	28	1.89
56040941--56040973	14	2.3	15	94	5	59	57	6	0	36	1.23
56048011--56049189	180	6.6	180	86	3	1510	27	22	18	30	1.97
56049247--56049437	64	3.0	63	92	2	301	38	15	15	30	1.89
56055909--56055942	11	3.0	12	87	12	54	67	0	0	32	0.91
56058685--56058738	27	2.0	27	92	7	92	38	5	18	37	1.74
56061555--56061579	8	3.1	8	100	0	50	48	0	0	52	1.00
56064205--56064252	24	2.0	24	100	0	96	45	8	20	25	1.79
56064906--56064949	19	2.3	19	88	0	61	9	0	47	43	1.35
56067586--56067617	8	4.2	8	84	15	50	59	0	0	40	0.97
56080240--56080403	43	3.8	42	77	9	161	23	17	26	32	1.96
56080567--56080679	46	2.5	46	91	2	176	37	6	23	33	1.80
56081781--56082095	157	2.0	157	98	0	612	30	11	21	37	1.88
56087819--56087949	55	2.4	55	80	3	149	14	26	25	33	1.94
56092065--56092090	13	2.0	13	100	0	52	23	38	23	15	1.92
56098439--56098578	60	2.3	60	88	1	208	46	2	14	37	1.56
56098470--56098572	30	3.4	30	68	10	84	47	2	11	37	1.55
56103701--56103735	17	2.1	17	100	0	70	31	11	22	34	1.90
56109730--56109857	46	2.7	46	81	4	150	31	20	27	21	1.98
56111797--56111843	16	2.9	16	84	9	51	46	6	27	19	1.74
56111818--56111848	16	1.9	16	93	0	53	48	3	29	19	1.64
56115091--56115121	12	2.6	12	94	0	53	0	25	0	74	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56115201--56115231	16	1.9	16	93	0	53	54	3	0	41	1.16
56118828--56118853	9	2.9	9	100	0	52	34	19	0	46	1.50
56119836--56119889	23	2.4	23	96	3	101	31	3	24	40	1.72
56124301--56124352	6	8.2	6	79	12	59	17	0	3	78	0.89
56132048--56132132	42	2.0	42	97	0	161	11	48	17	22	1.80
56134438--56134501	31	2.1	31	90	0	101	23	21	15	39	1.92
56134709--56134789	24	3.4	24	93	5	137	28	22	19	29	1.98
56134716--56134788	23	3.1	23	96	2	128	30	20	20	28	1.98
56134837--56134883	20	2.3	20	85	0	76	31	23	12	31	1.92
56135389--56135424	8	4.5	8	92	0	63	11	22	22	44	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185