genome.fa.s5.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  117  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36385503--36385562	28	2.2	26	80	11	66	30	1	3	65	1.19
36388681--36388749	18	3.7	19	73	16	56	66	0	1	31	1.00
36388681--36388767	38	2.3	37	82	7	102	65	0	3	31	1.09
36388709--36388793	9	9.3	9	72	13	50	61	0	4	34	1.17
36388687--36388758	29	2.4	30	84	11	87	66	0	2	30	1.06
36388650--36388781	19	7.1	19	70	16	80	60	0	3	35	1.17
36388728--36388786	9	6.8	8	76	14	55	59	0	5	35	1.20
36388957--36388993	19	1.9	19	88	0	56	45	8	13	32	1.73
36389017--36389068	20	2.5	20	87	9	70	48	3	1	46	1.31
36389060--36389134	36	2.1	36	82	5	89	28	6	0	65	1.18
36389146--36389348	89	2.3	88	84	5	255	36	8	19	35	1.82
36398805--36398866	31	2.0	31	96	0	115	43	16	9	30	1.80
36404111--36404165	28	2.0	28	81	0	65	29	16	0	54	1.42
36404470--36404516	22	2.1	22	96	0	85	25	34	0	40	1.56
36404470--36404568	52	1.9	52	93	0	171	30	31	0	38	1.58
36404521--36404571	22	2.3	22	86	6	68	33	31	0	35	1.58
36404605--36404669	30	2.2	30	91	0	103	32	1	0	66	1.01
36407029--36408053	23	39.7	23	73	20	673	43	23	1	32	1.61
36407000--36408053	75	13.5	76	86	9	990	43	23	1	32	1.61
36406982--36408047	29	40.8	28	78	14	904	42	23	1	32	1.61
36412012--36412093	31	3.0	27	76	16	80	35	0	4	59	1.19
36412016--36412100	27	3.0	27	77	16	84	36	0	4	58	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36412118--36412155	18	2.1	18	90	5	58	31	2	0	65	1.06
36416714--36416756	16	2.7	16	82	7	52	37	16	2	44	1.60
36418316--36418372	9	6.2	9	71	4	51	19	10	26	43	1.83
36418532--36418556	12	2.1	12	100	0	50	16	24	36	24	1.94
36423321--36423356	9	4.0	9	100	0	72	44	22	0	33	1.53
36425018--36425166	11	14.5	11	71	20	76	38	0	0	61	1.01
36425010--36425164	40	3.9	40	99	0	301	36	0	0	62	1.00
36425029--36425184	29	5.6	29	67	19	89	37	0	0	61	1.01
36425107--36425196	30	3.0	30	79	9	103	38	2	1	57	1.18
36424989--36425034	17	2.7	17	82	0	56	39	0	0	60	0.97
36425147--36425183	19	1.9	19	88	0	56	40	2	0	56	1.13
36426967--36427035	16	4.2	16	92	3	120	24	1	37	36	1.65
36426967--36427035	33	2.1	32	94	2	120	24	1	37	36	1.65
36427016--36427106	45	2.0	45	85	2	121	27	6	28	37	1.82
36427271--36427305	18	2.0	17	88	5	52	54	0	0	45	0.99
36427391--36427425	18	2.0	17	88	5	52	54	0	0	45	0.99
36427254--36427756	120	4.2	120	99	0	952	48	5	1	43	1.38
36430779--36430888	33	3.3	33	81	11	136	31	8	17	42	1.78
36430835--36430937	51	2.0	50	94	5	181	28	7	18	45	1.77
36431004--36431270	86	3.1	86	99	0	527	47	7	4	40	1.53
36436779--36436803	13	1.9	13	100	0	50	32	4	24	40	1.73
36437893--36438051	43	3.7	43	75	7	153	24	17	26	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36439516--36439557	21	2.0	22	90	4	68	38	26	4	30	1.77
36441636--36441762	42	3.0	41	78	10	121	30	25	16	27	1.97
36443547--36443611	28	2.4	27	85	12	80	46	0	3	50	1.17
36444375--36444474	49	2.0	49	88	0	146	22	8	11	59	1.57
36444393--36444493	49	2.1	49	81	7	116	23	8	7	59	1.54
36456791--36456876	28	2.8	33	70	17	83	31	19	20	27	1.97
36457111--36457162	27	1.9	27	84	7	70	23	17	23	36	1.95
36464283--36464315	16	2.1	16	100	0	66	30	45	12	12	1.78
36464591--36464666	26	2.9	26	82	0	89	42	19	17	21	1.90
36464831--36464917	27	3.2	27	91	0	138	21	17	18	42	1.89
36466760--36466785	13	2.0	13	100	0	52	30	0	38	30	1.58
36474738--36474777	20	2.0	20	90	0	62	50	0	45	5	1.23
36476848--36476888	3	13.7	3	100	0	82	68	31	0	0	0.90
36483089--36483164	38	2.0	38	86	0	107	40	11	9	38	1.74
36494295--36494590	83	3.6	83	100	0	592	23	26	19	30	1.98
36494800--36494849	24	2.0	25	81	11	59	10	34	2	54	1.45
36501953--36501994	22	2.1	19	86	13	57	45	2	0	52	1.13
36502594--36502619	3	8.7	3	100	0	52	65	0	34	0	0.93
36511898--36511946	11	4.5	11	77	10	55	48	12	20	18	1.79
36513540--36513626	31	2.8	31	75	6	86	24	34	20	20	1.97
36515506--36515573	33	2.0	34	81	13	79	38	2	0	58	1.13
36515509--36515584	18	4.3	18	75	14	70	38	2	0	59	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36515521--36515579	8	7.1	8	80	14	57	40	1	0	57	1.09
36519426--36519581	78	2.0	78	100	0	312	48	12	21	16	1.80
36530366--36530440	23	3.0	27	74	18	72	40	6	0	53	1.27
36532944--36533038	28	3.4	27	73	12	93	46	18	15	18	1.84
36534526--36534550	12	2.1	12	100	0	50	44	24	16	16	1.86
36534985--36535009	7	3.6	7	100	0	50	16	0	0	84	0.63
36534993--36535082	47	1.9	47	95	2	164	35	0	7	56	1.28
36538200--36538360	80	2.0	80	97	1	306	57	8	6	27	1.54
36538392--36538444	26	2.0	27	88	3	81	33	20	7	37	1.81
36545503--36545540	10	4.1	9	86	13	51	55	0	2	42	1.14
36545498--36545538	18	2.3	18	87	8	57	56	0	2	41	1.13
36545545--36545585	21	2.0	21	85	0	55	41	19	4	34	1.73
36545829--36545853	13	1.9	13	100	0	50	32	0	4	64	1.12
36546538--36546657	55	2.2	55	95	0	213	30	8	1	60	1.36
36547144--36547214	22	3.1	22	73	18	74	54	1	4	39	1.28
36552979--36553081	37	2.8	37	92	0	170	37	12	22	27	1.90
36553043--36553166	46	2.8	46	91	3	200	33	16	22	27	1.96
36560411--36560586	37	4.8	37	96	0	298	39	13	21	26	1.90
36560549--36560672	46	2.8	46	91	3	200	33	16	22	27	1.96
36561333--36561554	111	2.0	111	98	0	426	44	4	20	30	1.72
36565773--36566664	446	2.0	446	100	0	1784	36	16	14	32	1.89
36569658--36569688	12	2.5	12	94	5	53	29	6	3	61	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36575941--36576280	44	7.6	45	72	12	186	30	17	22	29	1.97
36576126--36576297	89	1.9	87	81	5	202	32	18	22	27	1.97
36576319--36576457	45	3.1	45	68	17	117	28	23	25	23	2.00
36576300--36576588	89	3.2	89	90	0	418	26	25	23	24	2.00
36576585--36576998	131	3.1	132	88	1	616	28	19	26	25	1.99
36576700--36576783	44	1.9	44	85	0	105	26	20	28	25	1.99
36577421--36577476	23	2.6	22	83	10	64	35	8	16	39	1.80
36578696--36578770	22	3.4	21	83	7	78	21	28	2	48	1.64
36578710--36578770	11	5.5	11	86	5	79	21	29	3	45	1.67
36580639--36580681	18	2.4	18	84	0	50	18	25	9	46	1.79
36581228--36582036	21	37.4	21	77	11	604	46	26	0	26	1.57
36581377--36581416	7	5.9	7	85	14	57	47	0	0	52	1.00
36581423--36581456	12	2.8	12	100	0	68	55	35	0	8	1.31
36582007--36582064	28	2.1	28	87	6	82	44	34	0	20	1.52
36582028--36582074	20	2.3	20	92	3	76	42	40	0	17	1.49
36582094--36582147	16	3.0	19	67	25	53	51	9	0	38	1.34
36585188--36585621	125	3.5	124	87	0	589	29	20	17	32	1.96
36588761--36588802	22	1.9	22	90	0	66	50	19	16	14	1.79
36588761--36588808	22	2.2	22	84	0	60	52	16	14	16	1.76
36590967--36591007	18	2.2	19	91	4	66	26	24	0	48	1.51
36590968--36591067	43	2.3	43	82	8	121	27	20	1	52	1.53
36602001--36602041	21	2.0	21	90	0	64	29	21	29	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36603947--36603980	16	2.1	16	88	0	50	50	14	17	17	1.79
36608436--36608476	15	2.7	15	85	10	57	58	0	0	41	0.98
36614150--36614245	46	2.1	46	94	3	167	37	28	3	31	1.73
36617478--36617557	42	1.9	42	84	5	108	35	7	26	31	1.84
36619663--36619800	74	1.9	74	90	0	222	23	13	22	39	1.90
36631307--36631399	39	2.5	37	80	7	98	27	29	22	20	1.98
36631543--36631611	27	2.7	26	82	10	72	31	26	0	42	1.56
36631755--36631790	3	12.0	3	100	0	72	66	0	0	33	0.92
36632714--36632751	14	2.4	16	87	12	53	55	0	0	44	0.99
36632701--36632768	31	2.3	28	78	9	73	44	2	0	52	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185