genome.fa.s5.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  113  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35402586--35402635	23	2.2	23	85	0	64	26	14	18	42	1.87
35414639--35414761	42	3.0	42	81	9	119	32	18	21	26	1.97
35414682--35414764	42	2.0	42	88	4	123	30	16	21	31	1.96
35415196--35415264	21	3.3	21	83	0	75	5	42	18	33	1.75
35419434--35419802	104	3.6	104	87	1	535	31	28	19	20	1.97
35419939--35420003	30	2.2	29	81	8	76	30	27	6	35	1.81
35419946--35420003	30	1.9	30	85	0	80	31	24	6	37	1.82
35423351--35423674	9	36.2	9	74	13	267	36	0	16	45	1.53
35423520--35423599	25	3.1	25	82	10	106	40	1	12	46	1.50
35423679--35423721	19	2.2	19	91	4	68	39	2	11	46	1.53
35423710--35423734	12	2.1	12	100	0	50	32	8	16	44	1.76
35423828--35423861	17	1.9	18	88	5	52	55	0	5	38	1.24
35423897--35423937	19	2.2	19	95	0	73	41	0	9	48	1.36
35425043--35425088	22	2.1	22	95	0	83	43	13	2	41	1.55
35426929--35426979	21	2.4	21	100	0	102	33	49	0	17	1.47
35430346--35430387	16	2.6	16	78	10	50	26	0	7	66	1.17
35443952--35443995	5	8.8	5	87	9	63	22	0	2	75	0.92
35443945--35443993	24	2.0	24	88	7	73	20	2	4	73	1.10
35445204--35445476	131	2.1	131	93	0	465	38	13	13	34	1.84
35446003--35446042	19	2.2	19	90	4	64	15	5	15	65	1.44
35450129--35450171	18	2.5	17	85	14	61	81	0	6	11	0.87
35451138--35451300	45	3.7	45	76	4	152	33	19	20	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35451102--35451286	89	2.1	87	82	4	228	31	17	21	28	1.96
35451050--35451758	44	15.8	44	70	12	363	31	19	21	28	1.97
35451132--35451306	87	2.0	88	81	2	208	34	18	20	26	1.96
35451223--35451627	137	3.0	136	87	2	548	32	19	20	27	1.97
35451452--35451763	136	2.3	136	81	7	318	31	19	21	27	1.97
35453427--35453699	131	2.1	131	93	0	465	38	13	13	34	1.84
35455987--35456022	17	2.0	19	89	10	58	69	0	0	30	0.89
35457206--35457241	4	9.0	4	100	0	72	25	0	25	50	1.50
35460716--35460755	18	2.2	18	90	0	62	20	30	7	42	1.79
35461331--35462365	22	47.9	21	77	9	808	44	29	0	25	1.59
35461431--35461470	15	2.8	14	77	7	53	47	32	0	20	1.50
35461328--35462370	65	16.1	64	87	2	1072	43	29	0	25	1.59
35465577--35466184	125	4.8	126	85	5	739	31	23	15	29	1.95
35467368--35467403	16	2.2	16	100	0	72	41	0	33	25	1.55
35468394--35468446	27	2.0	27	82	10	65	41	13	5	39	1.68
35471204--35471262	31	1.9	31	89	0	91	47	11	10	30	1.73
35476842--35476898	14	4.1	14	81	6	71	21	3	5	70	1.22
35477001--35477025	11	2.3	11	100	0	50	28	0	0	72	0.86
35481244--35481411	91	1.8	91	87	2	248	46	3	2	47	1.35
35481743--35481777	18	2.0	17	88	5	52	45	0	0	54	0.99
35481942--35482032	45	2.0	45	85	2	121	37	28	6	27	1.82
35482013--35482081	16	4.2	16	87	3	102	36	34	1	27	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35495271--35495309	16	2.3	18	86	8	55	30	17	20	30	1.96
35498472--35498505	3	11.3	3	100	0	68	32	0	0	67	0.91
35501263--35501336	24	3.0	24	78	5	78	33	21	25	18	1.96
35502662--35502705	21	2.0	22	83	12	56	29	11	15	43	1.82
35507177--35507215	21	1.9	20	94	5	69	30	25	10	33	1.89
35519542--35519566	12	2.1	12	100	0	50	0	8	36	56	1.29
35522874--35523123	82	3.1	81	62	24	177	45	4	4	46	1.40
35522877--35523186	157	2.0	157	93	0	530	47	5	3	43	1.42
35523316--35523367	16	3.2	16	97	0	95	38	34	0	26	1.57
35524234--35524263	14	2.1	14	100	0	60	40	6	13	40	1.71
35530548--35530679	70	1.9	71	88	1	203	35	9	9	45	1.69
35530960--35531010	25	2.1	24	88	3	75	62	7	0	29	1.23
35535611--35535661	27	1.9	26	84	11	68	21	9	13	54	1.67
35545770--35545794	11	2.3	11	100	0	50	48	0	8	44	1.32
35545942--35546027	25	3.3	25	67	17	68	46	0	11	41	1.40
35559594--35559705	43	2.6	43	94	0	197	29	27	21	21	1.98
35559594--35559729	43	3.2	41	84	8	148	30	25	20	22	1.98
35562338--35562365	12	2.3	12	100	0	56	75	10	0	14	1.06
35563637--35563731	21	4.4	22	81	4	113	34	34	1	29	1.65
35563712--35563751	14	2.8	16	82	17	52	40	32	0	27	1.57
35563637--35563744	21	5.0	21	73	11	76	35	35	0	28	1.64
35563998--35564046	7	6.9	7	81	11	55	48	34	0	16	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35563999--35564126	15	8.9	15	67	13	63	44	34	0	20	1.57
35563999--35564131	22	6.2	21	71	14	67	45	33	0	21	1.57
35564360--35564570	113	1.9	113	88	4	318	29	24	19	26	1.98
35564505--35564646	73	1.9	74	91	1	232	27	26	21	24	1.99
35565012--35565226	73	2.9	72	86	2	295	27	25	20	26	1.99
35564579--35565108	114	4.6	114	96	0	927	26	26	22	25	2.00
35565014--35565255	73	3.3	72	84	4	288	28	24	20	26	1.99
35564900--35565506	261	2.3	260	89	1	921	27	25	21	25	2.00
35565011--35565818	407	2.0	406	91	1	1325	26	24	21	26	2.00
35565271--35565662	73	5.4	73	88	2	572	26	25	22	26	2.00
35565676--35565818	72	2.0	72	88	0	214	27	22	21	28	1.99
35566195--35566353	43	3.7	43	75	13	157	23	19	27	29	1.98
35575479--35575504	13	2.0	13	100	0	52	38	7	15	38	1.76
35579428--35579548	43	2.9	42	81	4	136	28	17	23	31	1.97
35590011--35590061	21	2.4	21	100	0	102	39	29	3	27	1.74
35594002--35594781	388	2.0	388	91	3	1273	33	23	12	30	1.91
35595291--35595373	33	2.5	33	76	7	87	28	20	15	34	1.94
35605877--35605926	22	2.3	22	92	0	82	52	4	12	32	1.57
35610747--35610858	32	3.5	31	80	8	102	24	15	17	42	1.88
35612895--35612932	19	2.0	19	85	10	51	50	2	5	42	1.39
35614023--35614078	29	1.9	30	85	7	80	46	5	1	46	1.36
35614070--35614111	22	2.0	21	85	4	57	59	0	4	35	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35614541--35614654	58	1.9	59	87	5	169	42	16	14	26	1.87
35615707--35615753	6	7.8	6	100	0	94	51	17	14	17	1.77
35619052--35619080	13	2.2	13	100	0	58	34	0	0	65	0.93
35621612--35621717	41	2.6	41	90	1	169	25	18	23	32	1.97
35624757--35624823	34	1.9	35	87	3	100	44	14	8	31	1.76
35644412--35644524	56	2.0	56	86	6	158	29	16	25	28	1.97
35644468--35644695	122	1.8	123	85	4	316	27	15	22	34	1.94
35644588--35645194	75	8.0	73	80	10	585	27	18	21	32	1.96
35644790--35644953	84	1.9	86	90	2	260	26	18	21	32	1.97
35644714--35645272	159	3.5	156	81	8	603	27	18	20	33	1.96
35645057--35645193	73	1.9	73	89	0	211	24	19	25	29	1.98
35645437--35645470	16	2.2	16	89	5	52	14	14	5	64	1.46
35645487--35645744	75	3.5	73	82	4	304	32	17	21	29	1.96
35645467--35645744	74	3.8	74	81	4	321	31	17	19	30	1.96
35647721--35647777	28	2.0	28	86	0	78	29	7	5	57	1.47
35653030--35653103	21	3.5	21	69	7	60	44	14	24	16	1.85
35653037--35653117	42	1.9	42	92	0	135	44	14	22	18	1.86
35653095--35653138	21	2.1	21	83	8	54	43	11	20	25	1.85
35655147--35655182	10	3.6	10	96	0	63	38	0	11	50	1.38
35655144--35655175	14	2.3	14	94	0	55	40	0	9	50	1.35
35655107--35655243	61	2.2	61	78	10	154	56	0	6	36	1.31
35655218--35655288	22	3.3	22	74	7	56	54	1	4	39	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35655188--35655271	36	2.5	34	78	14	93	54	1	5	38	1.32
35655278--35655365	27	3.3	27	75	13	92	47	1	10	40	1.45
35655278--35655366	29	3.2	29	73	10	89	48	1	10	40	1.44
35657080--35657374	51	5.8	51	73	6	233	29	25	14	29	1.95
35657135--35657374	102	2.4	102	93	0	399	30	26	13	29	1.94
35658577--35658608	11	2.6	13	90	9	50	34	12	15	37	1.85
35660166--35660285	43	2.8	44	89	3	172	28	23	20	27	1.99
35660272--35660555	88	3.2	88	91	0	433	28	23	20	27	1.99
35660345--35660487	43	3.3	42	66	11	108	24	26	20	27	1.99
35660248--35660565	176	1.8	176	84	3	426	27	24	19	28	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185