genome.fa.s5.2.7.7.80.10.50.1000.151.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  151  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45683517--45683550	12	2.7	13	86	9	52	88	0	11	0	0.52
45686649--45686708	23	2.5	24	74	15	61	58	0	0	41	0.98
45686648--45686705	17	3.3	18	78	9	57	58	0	0	41	0.98
45687636--45687661	3	8.7	3	100	0	52	65	0	0	34	0.93
45687849--45687887	8	4.9	8	81	12	53	64	0	0	35	0.94
45687898--45687951	26	2.1	26	100	0	108	57	0	0	42	0.98
45697856--45697889	16	2.1	16	88	0	50	70	2	0	26	1.01
45703730--45703883	73	2.1	73	91	0	254	22	24	30	22	1.99
45704155--45704270	54	2.1	54	93	0	205	23	25	28	22	1.99
45705314--45705428	24	4.7	24	72	2	95	33	20	29	15	1.94
45705362--45705501	25	5.7	24	69	14	81	35	18	26	19	1.95
45707297--45707396	42	2.4	42	93	0	164	37	12	27	24	1.90
45710789--45710855	27	2.4	27	82	7	82	76	1	19	2	1.00
45715003--45715095	4	23.2	4	100	0	186	50	24	0	24	1.49
45718897--45718944	20	2.4	20	85	0	69	62	4	0	33	1.14
45730869--45730916	25	1.9	25	100	0	96	25	0	6	68	1.12
45730912--45730981	28	2.5	28	97	0	131	11	17	20	51	1.75
45731318--45731346	15	1.9	15	100	0	58	34	0	3	62	1.12
45731891--45732005	50	2.3	52	79	11	132	37	35	0	26	1.57
45732163--45732218	23	2.5	22	82	2	67	30	42	1	25	1.65
45732512--45732698	73	2.6	73	92	1	304	24	26	22	26	2.00
45732593--45732973	114	3.4	113	89	0	591	24	27	23	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45740218--45740333	58	2.0	58	96	0	214	41	12	15	31	1.84
45748265--45748437	63	2.8	63	81	4	197	24	17	27	30	1.97
45748279--45748461	63	2.9	62	77	6	179	25	17	27	29	1.97
45749592--45749630	18	2.2	17	86	13	53	30	0	20	48	1.50
45749856--45749931	23	3.3	23	81	0	98	25	18	27	28	1.98
45751088--45751226	49	2.8	49	90	0	206	25	16	26	31	1.96
45756026--45756059	15	2.3	15	89	0	50	0	2	44	52	1.16
45756020--45756052	5	6.6	5	100	0	66	0	0	39	60	0.97
45760039--45760063	2	12.5	2	100	0	50	52	0	48	0	1.00
45766594--45766621	6	4.7	6	100	0	56	46	0	53	0	1.00
45782892--45782940	23	2.1	23	92	0	80	30	8	22	38	1.83
45786171--45786225	27	2.0	27	96	0	101	20	25	34	20	1.96
45791968--45792002	18	2.0	17	88	5	52	54	0	0	45	0.99
45792067--45792118	15	3.6	15	80	12	56	53	1	0	44	1.11
45791951--45792416	120	3.9	120	99	0	905	48	6	2	43	1.39
45792187--45792238	15	3.6	15	80	12	56	53	1	0	44	1.11
45792301--45792349	16	3.1	16	80	11	57	53	2	0	44	1.12
45792301--45792358	15	3.9	15	80	13	59	53	1	0	44	1.10
45795189--45795264	33	2.3	33	97	0	143	35	5	15	43	1.70
45795307--45795388	37	2.2	37	91	0	128	35	9	14	40	1.79
45795468--45795543	33	2.3	33	97	0	143	35	5	15	43	1.70
45795586--45795667	37	2.2	37	91	0	128	35	8	15	40	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45795167--45795695	279	1.9	279	99	0	1049	39	6	12	41	1.69
45803080--45803160	40	2.0	40	100	0	162	40	17	17	24	1.90
45807656--45807680	13	1.9	13	100	0	50	40	16	4	40	1.67
45812418--45812442	13	1.9	13	100	0	50	40	16	4	40	1.67
45817289--45817339	24	2.1	24	88	0	75	37	5	11	45	1.65
45823733--45823775	21	2.0	21	100	0	86	44	37	13	4	1.65
45826665--45826704	19	2.1	19	86	9	55	35	2	0	62	1.09
45838935--45838966	3	10.7	3	93	0	55	0	0	37	62	0.95
45840106--45840156	25	2.0	25	85	14	70	35	0	0	64	0.94
45840105--45840166	23	2.5	26	80	17	71	35	0	1	62	1.05
45850046--45850074	2	14.5	2	100	0	58	51	0	48	0	1.00
45852089--45852138	25	2.1	24	85	7	66	18	14	2	66	1.35
45855362--45855386	4	6.2	4	100	0	50	48	0	0	52	1.00
45856509--45856586	20	3.8	19	76	10	66	42	2	2	52	1.28
45858696--45858737	18	2.2	19	83	8	50	16	4	14	64	1.45
45863193--45863245	18	2.9	18	81	13	65	83	3	7	5	0.92
45863204--45863299	25	3.8	24	70	21	72	73	3	16	6	1.16
45863255--45863307	19	2.7	20	80	11	65	71	0	22	5	1.06
45864893--45865425	86	6.2	86	93	0	850	30	20	23	25	1.99
45865550--45865652	44	2.3	44	82	9	122	32	21	21	25	1.98
45865637--45865759	44	2.8	44	80	3	131	29	15	21	33	1.94
45866644--45866684	19	2.2	19	86	4	57	0	14	2	82	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45867991--45868032	18	2.2	19	83	8	50	16	4	14	64	1.45
45871286--45871333	17	2.6	19	80	16	64	41	0	18	39	1.51
45871298--45871333	17	2.1	17	100	0	72	41	0	22	36	1.54
45872691--45872723	8	4.2	8	96	3	59	90	0	9	0	0.44
45872790--45872849	29	2.1	29	100	0	120	40	10	13	36	1.78
45885083--45885166	23	3.5	22	79	11	78	25	25	20	29	1.99
45891643--45891676	16	2.2	16	89	5	52	2	8	14	73	1.19
45893810--45893889	30	2.6	31	88	5	119	18	3	52	25	1.62
45898375--45898406	12	2.7	12	90	0	55	28	6	0	65	1.16
45912284--45912380	48	2.0	48	97	0	185	37	24	9	28	1.86
45912532--45912800	46	5.8	46	87	3	398	29	23	8	38	1.85
45913031--45913067	17	2.2	17	90	9	58	32	0	0	67	0.91
45914440--45914688	71	3.5	71	87	1	347	39	17	13	28	1.88
45914440--45914691	23	10.7	24	73	13	157	39	17	13	29	1.88
45914442--45914690	48	5.3	44	71	13	122	39	17	13	29	1.88
45915402--45915483	28	3.0	25	80	15	83	30	21	12	35	1.90
45915411--45915483	28	2.6	28	88	0	101	28	24	12	34	1.92
45917168--45917228	32	1.9	32	83	12	81	49	1	4	44	1.33
45917187--45917228	20	2.1	20	86	0	57	47	0	7	45	1.30
45919626--45919659	13	2.9	11	84	16	50	61	2	0	35	1.11
45922976--45923022	25	1.9	24	87	12	69	34	0	4	61	1.15
45941897--45941974	31	2.5	31	80	2	93	30	17	6	44	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45968437--45968481	5	8.8	5	82	4	54	6	42	11	40	1.67
45968437--45968481	10	4.4	10	88	5	63	6	42	11	40	1.67
45968497--45968528	15	2.2	15	94	5	57	0	15	0	84	0.63
45968758--45968784	14	1.9	14	100	0	54	51	18	0	29	1.46
45972369--45972408	21	1.9	21	84	0	53	42	0	5	52	1.23
45979401--45979441	16	2.5	17	80	11	50	17	19	0	63	1.31
45982475--45982526	24	2.1	24	86	10	70	40	3	1	53	1.30
45983383--45983422	17	2.3	18	86	4	55	22	0	7	70	1.12
45985638--45985729	22	4.2	22	86	5	105	30	28	0	41	1.56
45985638--45985729	44	2.1	44	84	8	116	30	28	0	41	1.56
45985679--45985781	52	2.0	51	81	12	122	33	33	0	33	1.58
45985731--45985772	22	1.9	22	90	0	66	33	33	0	33	1.58
45985814--45985876	28	2.2	30	85	8	94	38	0	1	60	1.07
45985960--45986022	24	2.7	23	75	18	58	28	0	4	66	1.12
45988151--45988185	18	2.0	18	88	5	54	48	20	0	31	1.50
45988139--45988227	23	3.8	23	81	8	117	46	25	0	28	1.53
45988171--45988434	28	9.5	28	77	15	214	47	23	0	29	1.52
45988208--45988337	33	4.1	33	84	10	189	48	23	0	28	1.51
45988293--45988435	23	5.8	23	81	12	142	48	21	0	30	1.51
45988288--45988435	51	3.0	50	87	8	180	47	22	0	29	1.51
45991610--45991888	123	2.2	125	83	7	354	33	24	13	28	1.93
45992133--45992174	3	14.0	3	100	0	84	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45993414--45993464	18	2.6	20	76	20	54	39	1	1	56	1.22
45998192--45998234	22	2.0	22	85	0	59	60	4	4	30	1.37
46005517--46005550	14	2.5	14	95	4	61	50	35	0	14	1.44
46008798--46008850	26	2.0	26	100	0	106	43	15	3	37	1.64
46012228--46012283	9	6.0	9	76	15	51	66	1	0	32	1.03
46013158--46013182	11	2.3	11	100	0	50	56	0	0	44	0.99
46013602--46013642	21	2.0	21	81	18	50	46	21	0	31	1.52
46016329--46016490	30	5.4	29	89	5	218	31	7	17	43	1.77
46022535--46022573	19	2.1	19	100	0	78	33	0	5	61	1.18
46025335--46025408	25	3.0	25	81	0	103	32	20	27	20	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185