genome.fa.s5.2.7.7.80.10.50.1000.137.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  137  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41991598--41991839	50	4.8	50	91	1	378	25	22	31	20	1.98
41996600--41996648	15	3.3	15	86	13	66	46	4	6	42	1.47
41996621--41996654	15	2.3	15	89	0	50	47	8	2	41	1.50
41996618--41996726	36	3.1	36	75	17	111	46	8	4	40	1.54
41997910--41997942	5	6.6	5	89	10	50	21	0	0	78	0.75
42002233--42002322	44	2.0	44	89	0	135	37	8	3	50	1.50
42009390--42009414	13	1.9	13	100	0	50	24	44	0	32	1.54
42010395--42010449	28	2.0	28	100	0	110	32	21	20	25	1.97
42011606--42011638	14	2.5	13	90	9	50	75	0	24	0	0.80
42013450--42013517	30	2.3	30	97	0	127	23	26	36	13	1.92
42015851--42015916	18	3.7	18	79	0	69	30	19	24	25	1.98
42016827--42016861	13	2.7	13	95	0	61	51	0	2	45	1.16
42017974--42018007	16	2.1	16	88	0	50	41	2	20	35	1.68
42028939--42029551	94	6.6	93	79	4	578	32	18	20	28	1.96
42028939--42029536	188	3.2	187	80	4	649	32	18	20	28	1.96
42028999--42029672	44	14.7	44	70	15	321	31	18	21	28	1.97
42029596--42029754	82	2.0	81	89	1	246	30	18	23	26	1.98
42029681--42030080	188	2.1	188	84	2	518	34	18	18	28	1.94
42029680--42030021	94	3.6	94	85	0	432	34	19	18	28	1.95
42029682--42030080	94	4.2	94	78	6	371	34	18	18	28	1.94
42030723--42030760	16	2.5	15	84	16	51	81	2	7	7	0.96
42031157--42031202	12	3.7	12	77	11	56	36	0	6	56	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42031612--42031653	12	3.2	12	84	15	57	21	2	2	73	1.06
42031753--42031803	25	2.0	25	92	0	84	29	5	7	56	1.51
42034533--42034626	30	3.1	30	89	1	134	26	23	6	43	1.77
42034543--42034620	15	5.2	15	65	11	52	26	20	7	44	1.78
42039197--42039317	30	4.0	30	89	5	174	26	21	6	45	1.76
42039206--42039313	15	7.2	15	64	12	60	26	20	7	45	1.77
42043070--42043094	13	1.9	13	100	0	50	44	0	8	48	1.32
42047229--42047347	11	11.3	11	71	20	67	60	0	3	36	1.13
42047230--42047295	31	2.1	31	94	0	114	60	0	3	36	1.12
42047229--42047347	52	2.2	54	84	8	147	60	0	3	36	1.13
42047279--42047336	28	2.0	29	90	6	91	63	0	1	34	1.04
42047290--42047323	17	2.0	17	94	0	59	67	0	0	32	0.91
42048167--42048218	24	2.2	24	82	0	59	51	5	5	36	1.50
42065454--42065481	6	4.7	6	100	0	56	17	67	14	0	1.22
42066780--42066884	54	1.9	54	92	0	174	17	20	17	44	1.86
42067225--42067536	158	2.0	158	91	2	511	21	25	22	31	1.98
42079484--42079524	6	6.8	6	82	17	50	90	9	0	0	0.46
42079487--42079525	8	4.8	8	87	6	60	89	10	0	0	0.48
42079484--42079530	14	3.6	13	81	18	62	89	8	0	2	0.57
42079485--42079525	17	2.3	18	87	4	66	90	9	0	0	0.46
42079486--42079530	17	2.7	16	86	10	63	88	8	0	2	0.58
42079484--42079530	11	3.9	11	86	13	58	89	8	0	2	0.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42080649--42080706	30	1.9	30	89	0	89	41	3	24	31	1.71
42080918--42080949	13	2.5	13	94	0	55	31	0	12	56	1.37
42081044--42081285	50	4.7	50	86	4	297	26	24	29	19	1.99
42081044--42081293	100	2.4	103	88	6	364	26	24	29	20	1.99
42082627--42082740	55	2.1	55	95	1	203	28	18	6	47	1.72
42083632--42083753	44	2.8	44	81	3	131	29	20	20	29	1.98
42083756--42083866	45	2.5	45	89	2	170	25	18	28	27	1.98
42083842--42084294	44	10.6	43	73	12	262	27	20	23	28	1.99
42083889--42084080	84	2.3	84	99	0	375	26	21	22	29	1.99
42083889--42084119	84	2.8	84	92	5	335	27	21	22	29	1.99
42083720--42084291	301	1.9	292	90	4	914	27	20	23	27	1.99
42084052--42084347	44	6.8	42	71	16	149	29	20	24	26	1.99
42084523--42084605	19	4.3	19	89	6	130	37	10	14	37	1.81
42084523--42084605	40	2.1	38	91	4	130	37	10	14	37	1.81
42091770--42091817	9	5.3	9	74	0	51	25	29	0	45	1.53
42096027--42096059	10	3.2	10	95	4	57	18	9	0	72	1.10
42096743--42096772	13	2.3	13	100	0	60	40	26	10	23	1.86
42102159--42102267	25	4.4	24	76	3	101	27	24	26	21	1.99
42102159--42102267	50	2.2	49	81	4	121	27	24	26	21	1.99
42102261--42102328	25	2.8	24	78	10	66	38	17	26	17	1.92
42111415--42111441	13	2.1	13	100	0	54	22	22	0	55	1.44
42113270--42113318	25	2.0	25	88	8	73	59	0	0	40	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42113993--42114036	21	2.0	22	87	12	65	50	2	9	38	1.47
42119202--42119528	48	7.0	48	82	3	310	33	17	21	27	1.96
42119571--42119917	34	10.2	34	69	11	176	39	16	14	29	1.87
42119578--42119814	68	3.5	68	76	4	210	40	16	14	29	1.88
42119662--42119887	68	3.3	68	79	6	215	40	15	15	28	1.88
42119639--42119883	102	2.4	102	80	4	253	39	15	15	28	1.89
42119731--42119917	68	2.8	68	81	4	216	39	16	13	30	1.87
42120348--42120372	13	1.9	13	100	0	50	8	36	32	24	1.84
42121985--42122037	26	2.1	26	82	10	65	28	1	3	66	1.20
42122424--42122456	17	1.9	17	88	11	50	60	0	0	39	0.97
42122825--42122900	21	3.7	21	91	3	120	39	9	13	38	1.76
42122837--42122923	21	4.0	24	84	12	93	39	8	14	37	1.76
42123393--42123427	17	2.1	17	88	0	52	37	8	0	54	1.31
42126553--42126609	25	2.3	25	84	6	71	35	21	22	21	1.96
42126570--42126641	25	2.9	25	83	4	74	40	19	25	15	1.90
42136337--42136363	3	9.0	3	100	0	54	33	33	0	33	1.58
42136519--42136556	18	2.2	18	85	4	51	57	5	2	34	1.35
42142619--42142675	20	2.8	22	85	15	79	49	5	0	45	1.24
42144933--42144962	13	2.4	12	89	10	51	30	3	23	43	1.70
42146238--42146357	37	3.2	37	68	17	102	36	5	20	38	1.74
42146222--42146384	76	2.1	77	83	6	206	36	6	19	38	1.76
42146579--42146678	41	2.4	41	94	0	173	28	21	25	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42151294--42151634	50	6.9	50	80	5	352	29	22	26	21	1.99
42151300--42151627	99	3.3	99	90	0	485	29	22	26	21	1.99
42152114--42152739	23	26.6	23	69	10	291	40	16	15	27	1.89
42152097--42152754	70	9.3	68	78	10	434	40	17	14	27	1.88
42152026--42152457	239	1.8	239	100	0	864	37	19	14	28	1.91
42152469--42152553	24	3.6	24	71	9	75	44	11	16	27	1.82
42152351--42152709	187	1.9	187	87	2	533	42	15	15	26	1.87
42152449--42152554	47	2.3	47	93	0	176	44	13	16	25	1.84
42152353--42152754	47	8.6	46	72	12	175	42	15	15	26	1.86
42152353--42152646	117	2.5	117	84	1	385	42	15	16	25	1.88
42153451--42153548	28	3.5	28	90	0	142	32	25	11	30	1.91
42169845--42169887	21	2.0	23	90	9	72	39	0	4	55	1.20
42169845--42169895	20	2.5	21	81	12	61	39	0	5	54	1.24
42173818--42173968	41	3.7	41	94	0	257	27	21	27	22	1.99
42175332--42175423	45	2.0	45	95	0	166	33	8	7	50	1.62
42175850--42175919	31	2.3	30	76	11	70	31	15	20	32	1.94
42175943--42176083	59	2.3	63	77	12	136	46	14	15	24	1.83
42179402--42179474	26	2.8	26	82	0	101	42	12	13	31	1.81
42181513--42181548	18	2.0	18	100	0	72	44	16	16	22	1.86
42185344--42185384	6	6.8	6	100	0	82	0	0	51	48	1.00
42189220--42189257	16	2.6	14	88	12	51	76	0	10	13	1.02
42189220--42189252	15	2.1	16	88	5	50	75	0	12	12	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42206475--42206552	41	1.9	41	89	0	120	32	26	21	19	1.97
42206526--42206569	16	2.8	16	89	0	70	34	27	22	15	1.95
42208665--42208718	28	1.9	28	84	0	72	61	3	5	29	1.36
42215398--42215438	21	1.9	22	85	5	57	68	0	26	4	1.10
42219327--42219575	50	4.8	50	85	4	284	20	29	24	26	1.99
42219326--42219575	100	2.4	104	88	6	357	20	29	24	26	1.99
42219670--42219701	13	2.5	13	94	0	55	56	12	0	31	1.37
42219913--42219970	30	1.9	30	89	0	89	31	24	3	41	1.71
42224608--42224693	3	28.7	3	92	0	145	33	31	1	33	1.66
42225488--42225512	1	25.0	1	100	0	50	100	0	0	0	0.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185