genome.fa.s5.2.7.7.80.10.50.1000.152.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  152  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46040321--46040399	39	2.0	39	95	0	140	32	31	5	30	1.79
46040971--46041370	200	2.0	200	98	0	773	10	22	39	28	1.86
46050090--46050200	25	4.5	24	71	16	77	23	22	20	33	1.97
46053330--46053369	3	14.0	3	84	10	57	70	0	30	0	0.88
46055941--46056075	39	3.5	39	85	1	191	15	20	31	33	1.93
46058496--46058540	21	2.0	23	83	8	58	35	4	22	37	1.74
46058727--46058768	19	2.2	19	91	4	66	28	9	11	50	1.70
46061721--46061770	25	2.0	26	84	4	66	42	0	42	16	1.47
46061823--46061880	30	1.9	30	85	0	80	44	0	36	18	1.50
46062867--46063007	25	5.8	24	73	13	101	18	26	21	34	1.96
46062868--46063010	49	2.9	50	78	16	131	18	27	21	32	1.96
46062893--46063022	25	5.3	25	76	14	101	18	26	21	33	1.96
46062977--46063043	25	2.6	25	85	2	80	22	26	19	31	1.98
46067483--46067902	125	3.4	125	82	2	556	28	17	23	31	1.96
46071005--46071102	25	4.2	24	68	13	87	50	10	1	38	1.43
46070975--46071105	70	1.9	70	95	0	235	50	11	0	37	1.44
46071535--46071574	18	2.2	18	95	0	71	40	7	30	22	1.81
46072227--46072257	7	4.4	7	100	0	62	41	16	0	41	1.48
46073537--46073801	103	2.6	104	90	3	417	29	29	20	19	1.97
46074129--46074193	30	2.2	29	81	8	76	30	27	6	35	1.81
46074136--46074193	30	1.9	30	85	0	80	31	24	6	37	1.82
46081029--46081293	103	2.6	104	91	0	424	29	30	20	19	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46081621--46081685	30	2.2	29	81	8	76	30	27	6	35	1.81
46081628--46081685	30	1.9	30	85	0	80	31	24	6	37	1.82
46083555--46083579	10	2.5	10	100	0	50	56	0	0	44	0.99
46083578--46083675	51	1.9	51	83	4	126	45	3	21	29	1.67
46083658--46083690	11	2.8	12	86	9	50	42	3	30	24	1.70
46087082--46087106	13	1.9	13	100	0	50	80	0	0	20	0.72
46088009--46088034	3	8.7	3	100	0	52	69	0	0	30	0.89
46088330--46088589	130	2.0	130	97	0	493	16	14	29	40	1.87
46088496--46088684	95	2.0	95	96	0	351	13	14	31	40	1.85
46090013--46090158	72	2.0	72	98	0	283	18	28	19	33	1.96
46105607--46105645	5	8.0	5	83	16	55	41	0	0	58	0.98
46105608--46105643	19	1.9	18	94	5	63	41	0	0	58	0.98
46105875--46105932	30	1.9	30	89	0	89	41	3	24	31	1.71
46106144--46106175	13	2.5	13	94	0	55	31	0	12	56	1.37
46106270--46106404	50	2.7	50	98	0	261	26	23	32	17	1.96
46107857--46107956	41	2.4	41	84	0	119	27	22	22	29	1.99
46107882--46107961	41	2.0	41	94	0	142	27	22	20	30	1.98
46111192--46111275	23	3.5	22	79	11	78	25	25	20	29	1.99
46119602--46119657	29	1.9	29	82	13	71	48	3	0	48	1.19
46119792--46119903	52	2.1	53	95	3	199	31	22	8	37	1.85
46122117--46122159	16	2.8	15	79	6	50	44	11	0	44	1.40
46129231--46129256	3	8.7	3	100	0	52	34	34	0	30	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46134703--46134819	40	2.9	41	80	10	132	24	18	27	29	1.98
46135413--46135604	7	26.9	7	70	12	59	22	2	31	43	1.65
46135476--46135518	15	2.9	15	79	6	52	18	2	32	46	1.62
46135471--46135593	64	1.9	64	83	6	160	21	2	31	44	1.65
46142539--46142632	48	2.0	48	87	8	138	18	13	27	40	1.88
46149050--46149086	16	2.3	16	86	13	58	40	0	0	59	0.97
46149106--46149140	16	2.2	16	89	0	52	57	0	0	42	0.99
46149101--46149147	13	3.2	15	73	14	53	51	0	0	48	1.00
46152794--46152832	12	3.2	12	82	13	53	53	0	10	35	1.35
46154352--46154441	44	2.0	44	84	2	117	27	25	15	31	1.96
46154683--46154932	45	5.6	45	76	4	256	26	25	18	30	1.98
46154655--46155465	89	9.2	91	91	4	946	26	24	19	30	1.98
46154728--46155048	45	7.3	43	70	11	195	28	23	18	30	1.97
46156785--46156893	53	2.1	51	81	6	121	11	22	14	50	1.76
46159376--46159415	20	2.0	20	90	0	62	32	10	25	32	1.89
46163479--46163517	12	3.2	12	82	13	53	53	0	10	35	1.35
46166883--46167077	98	2.0	98	90	0	309	38	22	9	29	1.86
46167821--46167886	28	2.5	27	80	14	84	69	4	0	25	1.07
46167800--46167898	30	3.4	30	80	10	141	68	3	0	28	1.04
46167798--46167915	58	2.0	58	98	0	227	66	5	0	27	1.17
46167798--46167889	24	3.5	24	75	17	76	69	3	0	27	1.04
46167819--46167919	30	3.4	29	78	11	125	66	5	0	26	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46167800--46167919	30	3.9	34	77	20	124	66	5	0	27	1.18
46168594--46168725	19	6.8	19	89	3	210	37	14	10	37	1.81
46168587--46168724	59	2.4	59	90	4	212	37	13	10	38	1.79
46170638--46170664	2	13.5	2	100	0	54	0	51	0	48	1.00
46185856--46186042	98	1.9	97	94	3	331	29	29	25	15	1.96
46186080--46186168	20	4.7	20	68	22	66	62	0	3	33	1.11
46186064--46186126	10	6.1	10	77	14	56	57	0	1	41	1.08
46186064--46186250	41	4.5	40	85	7	257	60	0	3	35	1.13
46186126--46186189	14	4.5	14	77	11	76	62	0	4	32	1.16
46186064--46186250	84	2.2	81	88	6	268	60	0	3	35	1.13
46188570--46188774	103	2.0	103	94	0	356	44	7	17	31	1.76
46192605--46192629	11	2.3	11	100	0	50	40	0	0	60	0.97
46194581--46194644	25	2.4	27	82	12	80	20	3	23	53	1.60
46198073--46198212	51	2.7	51	79	4	156	32	27	15	24	1.95
46200160--46200211	25	2.1	25	85	7	70	7	15	7	69	1.35
46208035--46208123	11	8.9	11	70	26	65	41	1	0	57	1.06
46208017--46208094	39	1.9	41	92	7	133	38	1	0	60	1.05
46208064--46208145	29	2.7	29	88	7	119	41	1	0	57	1.06
46208015--46208141	68	1.9	67	91	4	211	38	1	0	59	1.07
46208074--46208123	11	4.9	11	81	18	72	46	0	0	54	1.00
46208111--46208166	22	2.5	21	80	11	58	41	1	3	53	1.29
46214005--46214051	24	2.0	24	84	16	62	31	0	17	51	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46214029--46214077	17	3.3	15	75	25	50	34	0	16	48	1.46
46214805--46214841	18	2.1	18	100	0	74	37	0	10	51	1.37
46223957--46223994	18	2.1	18	90	0	58	57	0	5	36	1.21
46223986--46224039	27	2.0	28	82	10	67	59	5	0	35	1.21
46224852--46224884	13	2.3	15	90	10	52	54	9	3	33	1.47
46225032--46225060	15	1.9	15	100	0	58	55	0	3	41	1.17
46227352--46227568	118	1.8	118	88	2	328	35	3	11	48	1.57
46232489--46232611	19	6.3	19	65	14	52	35	0	0	62	1.07
46233955--46234022	21	3.3	21	83	4	77	47	17	17	17	1.84
46233972--46234011	21	1.9	21	100	0	80	40	15	20	25	1.90
46235215--46235239	13	1.9	13	100	0	50	36	8	24	32	1.84
46237782--46237821	21	1.9	21	94	0	71	55	10	12	22	1.67
46237738--46237870	70	1.9	67	86	4	185	44	11	11	33	1.76
46240102--46240209	18	5.4	18	64	23	56	38	0	0	59	1.10
46240071--46240145	30	2.4	31	84	10	100	33	4	1	61	1.23
46240102--46240243	42	3.4	41	81	5	171	38	1	0	59	1.12
46240135--46240168	17	2.0	17	88	0	50	35	0	0	64	0.94
46240092--46240243	82	1.8	82	87	4	225	38	2	0	58	1.17
46240183--46240243	31	2.0	31	90	6	97	37	1	0	60	1.07
46241703--46241864	41	4.0	41	89	1	209	32	27	19	20	1.96
46242188--46242436	76	3.2	77	70	18	242	43	15	4	36	1.68
46242161--46242486	159	2.0	159	97	1	618	42	16	4	36	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46242673--46242707	17	2.1	17	89	5	54	31	14	5	48	1.67
46247619--46247672	15	3.4	15	75	12	54	9	27	9	53	1.63
46254910--46254953	19	2.4	18	85	7	61	50	2	2	45	1.27
46257161--46257226	31	2.1	31	91	0	105	43	15	13	27	1.84
46259028--46259070	22	2.0	22	85	0	59	58	6	4	30	1.45
46261956--46262193	131	1.8	131	89	3	381	37	19	15	26	1.92
46264809--46264838	14	2.1	14	100	0	60	20	36	13	30	1.90
46264808--46264896	45	2.0	45	84	4	117	22	26	22	28	1.99
46265002--46265213	79	2.7	79	91	2	338	19	22	21	36	1.95
46281602--46281672	3	23.3	3	74	8	63	30	1	5	61	1.27

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185