genome.fa.s5.2.7.7.80.10.50.1000.126.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  126  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38743294--38743368	26	3.0	26	75	7	68	49	32	1	17	1.55
38743498--38743617	41	2.9	40	77	7	107	45	32	3	19	1.67
38743558--38743741	14	13.7	14	67	12	66	46	31	1	20	1.60
38743603--38743732	27	5.0	28	69	17	84	46	32	0	20	1.57
38744201--38744250	19	2.6	19	87	9	75	38	48	0	14	1.44
38749913--38750113	101	2.0	101	99	0	393	20	19	13	45	1.84
38750177--38750206	3	10.0	3	100	0	60	33	0	0	66	0.92
38757509--38758454	100	9.6	98	85	7	1120	34	23	18	22	1.96
38757493--38758454	50	19.5	50	71	8	416	35	22	18	22	1.96
38759905--38759934	3	10.0	3	100	0	60	33	0	0	66	0.92
38765612--38765649	17	2.1	19	85	9	53	44	7	5	42	1.56
38771165--38771197	16	2.1	16	94	0	57	42	3	6	48	1.43
38789648--38789712	21	3.1	21	90	0	103	21	24	13	40	1.90
38790282--38791072	4	197.8	4	100	0	1582	25	0	24	50	1.50
38793223--38793255	5	6.4	5	96	3	57	45	0	0	54	0.99
38809744--38809782	21	1.9	21	89	5	62	61	0	5	33	1.18
38809897--38809973	39	1.9	39	87	10	111	27	11	2	58	1.46
38811278--38811406	17	6.9	17	70	20	62	34	1	0	62	1.10
38811285--38811406	47	2.6	46	76	13	131	32	1	0	64	1.09
38811299--38811420	38	3.2	37	82	6	147	32	1	0	64	1.09
38811354--38811424	29	2.4	30	83	4	99	35	1	0	63	1.03
38811345--38811384	11	3.5	11	90	6	62	40	2	0	57	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38811393--38811418	11	2.4	11	100	0	52	15	0	0	84	0.62
38812058--38812108	16	3.1	16	78	15	59	60	0	1	37	1.08
38812774--38812851	39	2.0	38	95	2	138	28	17	19	33	1.95
38814871--38814901	15	2.1	14	94	5	53	48	6	0	45	1.28
38827063--38827091	3	9.7	3	100	0	58	34	31	0	34	1.58
38828727--38828818	45	2.0	45	95	0	166	33	8	21	35	1.84
38830220--38830459	51	4.7	51	80	8	265	29	13	26	30	1.94
38830216--38830459	102	2.4	102	89	5	393	29	14	26	29	1.95
38830651--38830723	37	1.9	38	86	2	103	42	2	23	31	1.68
38832880--38832924	23	2.0	23	86	8	65	51	4	0	44	1.21
38837180--38837283	54	1.9	53	81	9	122	27	25	26	20	1.99
38840408--38840471	30	2.1	31	94	2	112	26	28	6	39	1.80
38840418--38840464	15	3.1	15	70	11	51	27	23	8	40	1.83
38845045--38845133	30	3.1	30	81	14	98	26	24	5	42	1.77
38845056--38845135	25	2.9	29	81	16	114	26	22	6	45	1.76
38847641--38847677	2	18.5	2	100	0	74	0	48	0	51	1.00
38857920--38858023	24	4.2	24	78	9	118	51	10	1	35	1.47
38857928--38858094	52	3.0	53	81	16	219	49	11	3	35	1.56
38857980--38858104	63	2.0	63	98	0	241	52	9	4	34	1.53
38858036--38858086	24	2.2	23	92	3	84	52	7	1	37	1.42
38892871--38892923	28	1.9	28	84	3	72	60	7	1	30	1.35
38894383--38894507	43	2.9	43	91	1	198	36	20	16	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38894385--38894541	43	3.7	42	86	4	154	35	19	16	28	1.94
38894925--38894970	21	2.2	21	88	0	65	6	43	15	34	1.72
38899788--38899865	9	9.1	9	71	10	65	30	2	23	43	1.67
38899794--38899843	25	2.0	25	84	0	64	32	0	22	46	1.52
38899788--38899864	34	2.3	34	84	4	93	31	2	23	42	1.68
38914540--38914597	21	2.8	21	69	26	59	46	1	1	50	1.22
38919272--38919310	6	6.5	6	96	0	69	0	64	17	17	1.30
38923903--38923927	2	12.5	2	100	0	50	52	0	48	0	1.00
38926150--38926378	126	1.8	128	83	4	286	52	10	13	22	1.71
38926927--38927262	168	2.0	168	99	0	663	36	10	9	43	1.72
38927694--38927734	19	2.2	19	86	0	55	48	2	2	46	1.28
38928207--38928248	20	2.0	20	86	4	57	69	0	4	26	1.08
38928667--38928691	7	3.6	7	100	0	50	48	0	0	52	1.00
38928661--38928699	14	2.8	14	76	0	51	56	0	5	38	1.22
38936146--38936194	16	3.0	16	75	3	53	73	0	14	12	1.10
38936993--38937030	18	2.2	18	90	9	62	21	5	2	71	1.19
38941452--38941489	18	2.2	18	86	9	53	18	5	5	71	1.25
38941696--38941734	18	2.2	18	95	4	71	61	5	7	25	1.44
38941695--38941734	17	2.2	19	86	13	66	62	5	7	25	1.42
38942444--38942629	92	2.0	92	94	0	327	46	6	17	30	1.73
38947745--38947774	12	2.6	12	94	5	53	73	13	0	13	1.10
38950090--38950122	15	2.2	15	100	0	66	24	6	18	51	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38950391--38950422	13	2.3	15	89	10	50	43	0	0	56	0.99
38954994--38955117	57	2.2	57	94	1	214	44	4	21	29	1.71
38954994--38955131	56	2.4	57	90	1	188	42	3	23	30	1.71
38959961--38960027	25	2.7	25	81	4	64	29	19	28	22	1.98
38969286--38969332	23	1.9	26	83	12	64	48	8	10	31	1.68
38980195--38980618	210	2.0	211	90	2	665	33	15	20	31	1.93
38983868--38983903	18	2.0	18	88	0	54	25	2	19	52	1.59
38983905--38984222	55	5.8	55	79	7	286	27	7	15	48	1.72
38983986--38984149	58	2.9	57	83	8	187	28	9	15	46	1.76
38983891--38984213	113	2.9	110	76	8	334	27	7	16	48	1.73
38985497--38985562	28	2.2	29	79	15	73	51	3	0	45	1.16
38989700--38989734	15	2.4	14	90	4	52	42	8	0	48	1.33
38990623--38990687	25	2.5	26	80	7	78	26	21	27	24	1.99
38990823--38990902	26	3.1	26	78	5	83	36	18	27	17	1.94
38990995--38991057	25	2.6	25	82	7	76	36	20	23	19	1.95
38993208--38993252	18	2.5	18	85	0	63	55	4	0	40	1.20
38993212--38993252	12	3.4	12	86	0	55	53	4	0	41	1.22
38993974--38994013	19	2.2	19	90	4	64	15	12	0	72	1.12
38994165--38994219	5	11.2	5	74	18	53	58	1	0	40	1.09
38994163--38994215	27	2.0	25	89	7	79	54	1	0	43	1.11
38997951--38998062	24	4.8	24	73	11	74	36	4	3	55	1.37
38998006--38998071	23	2.8	24	80	15	84	34	6	3	56	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38998086--38998142	24	2.4	24	77	16	64	28	7	8	56	1.56
38998821--38998855	18	2.0	17	88	5	52	17	5	17	60	1.55
39006929--39006962	15	2.1	16	84	15	52	32	0	0	67	0.91
39006934--39006962	15	1.9	15	100	0	58	34	0	0	65	0.93
39008152--39008400	42	5.9	42	84	6	292	30	21	22	26	1.99
39014406--39014451	7	6.0	7	90	9	56	30	0	17	52	1.45
39014413--39014553	9	16.4	9	75	15	113	36	1	19	43	1.60
39014406--39014535	32	3.9	33	75	16	124	36	1	20	42	1.61
39014539--39014564	13	2.0	13	100	0	52	30	0	15	53	1.42
39014800--39014835	16	2.2	16	90	0	54	36	0	16	47	1.47
39014809--39014892	25	3.4	25	76	3	89	33	2	21	42	1.66
39014736--39014892	9	18.6	9	67	12	82	31	3	19	44	1.69
39014910--39014955	7	6.6	7	78	16	51	28	0	10	60	1.30
39014910--39014955	15	3.3	15	79	17	62	28	0	10	60	1.30
39014884--39015243	98	3.7	98	99	0	702	36	1	13	48	1.54
39015008--39015053	7	6.6	7	78	16	51	28	0	10	60	1.30
39015008--39015053	15	3.3	15	79	17	62	28	0	10	60	1.30
39015106--39015151	7	6.6	7	78	16	51	28	0	10	60	1.30
39015106--39015151	15	3.3	15	79	17	62	28	0	10	60	1.30
39015805--39015908	33	3.2	33	67	8	104	43	4	10	41	1.60
39015805--39015910	32	3.2	32	67	9	97	44	4	10	40	1.60
39018269--39018317	16	3.0	17	88	8	75	48	16	0	34	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39018339--39018689	113	3.1	110	80	6	389	27	22	18	31	1.97
39018588--39018728	74	1.9	73	82	7	178	29	22	17	30	1.97
39018474--39019065	188	3.1	188	93	0	986	27	23	17	31	1.97
39018776--39018916	74	1.9	73	85	4	194	30	23	16	29	1.96
39018863--39019498	113	5.6	113	86	4	708	27	21	19	31	1.97
39018856--39019498	226	2.8	226	81	3	824	27	21	18	31	1.97
39021132--39021170	15	2.6	16	88	8	55	61	28	0	10	1.28
39022293--39022323	3	10.3	3	92	0	53	29	0	3	67	1.06
39022450--39022536	3	29.0	3	78	0	84	32	3	4	59	1.34
39030158--39030522	202	1.8	197	80	5	428	32	10	9	46	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185