genome.fa.s5.2.7.7.80.10.50.1000.94.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  94  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29892263--29892440	27	6.6	27	77	6	146	25	15	28	30	1.96
29892264--29892419	82	1.9	81	81	6	190	25	16	28	30	1.96
29894161--29894472	27	11.6	27	82	4	328	23	16	20	39	1.92
29895237--29895281	23	1.9	23	82	13	56	48	17	20	13	1.80
29895648--29895701	25	2.2	25	86	6	74	18	46	11	24	1.81
29898954--29899021	34	2.0	35	88	2	102	33	7	14	44	1.73
29898988--29899025	15	2.6	15	83	4	51	31	7	15	44	1.75
29900096--29900173	40	2.0	40	92	5	131	41	8	14	35	1.77
29901310--29901364	26	2.1	26	93	0	92	38	25	18	18	1.93
29901526--29902440	80	11.4	80	97	0	1652	18	15	22	44	1.86
29910616--29910649	16	2.2	15	89	5	50	47	0	0	52	1.00
29912211--29912245	3	11.7	3	100	0	70	65	0	34	0	0.93
29915134--29915396	40	6.6	39	86	4	278	25	27	21	25	1.99
29915134--29915396	120	2.2	119	82	4	307	25	27	21	25	1.99
29915328--29915405	40	1.9	41	82	10	97	26	28	20	24	1.99
29923038--29923285	40	6.2	40	89	5	172	27	27	21	23	1.99
29923078--29923338	40	6.5	40	88	5	334	27	27	21	23	1.99
29925272--29925450	43	4.2	42	78	7	146	31	26	17	25	1.97
29925417--29925507	43	2.1	43	83	4	112	24	24	17	34	1.96
29929480--29929592	56	2.0	57	91	1	183	38	18	8	34	1.82
29931223--29931251	15	1.9	15	100	0	58	65	6	6	20	1.40
29935171--29935298	48	2.7	48	75	4	132	44	7	28	19	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29946963--29947002	20	2.0	20	85	9	55	35	22	32	10	1.87
29946976--29947061	20	4.3	20	76	5	75	39	19	30	10	1.85
29948689--29948911	79	2.8	78	83	7	272	24	27	22	25	2.00
29948689--29948911	39	5.7	40	87	6	280	24	27	22	25	2.00
29956679--29956901	79	2.8	78	82	9	265	24	27	22	25	2.00
29956679--29956901	39	5.7	40	86	8	266	24	27	22	25	2.00
29969761--29969852	19	4.8	19	89	0	148	38	15	10	35	1.82
29969754--29969852	38	2.7	38	92	3	166	37	16	10	36	1.82
29971239--29971292	16	3.4	16	86	0	72	40	3	24	31	1.72
29973238--29973269	15	2.1	15	100	0	64	43	6	12	37	1.68
29977901--29978264	40	9.1	40	95	0	602	30	19	27	22	1.98
29988694--29988724	15	2.1	15	100	0	62	51	16	0	32	1.44
29989194--29989363	59	2.9	59	97	0	313	44	9	5	40	1.61
29989374--29989415	16	2.6	16	92	0	66	42	7	2	47	1.43
29992380--29992421	19	2.2	19	86	0	57	47	19	14	19	1.82
30000691--30000724	16	2.1	16	100	0	68	29	5	17	47	1.71
30003310--30003931	311	2.0	311	98	0	1190	35	18	20	24	1.95
30003618--30004808	531	2.2	531	97	0	2229	39	16	19	24	1.91
30004535--30005046	272	1.9	272	97	0	970	47	11	18	21	1.80
30008188--30008343	82	1.9	82	91	0	258	42	21	12	23	1.87
30010677--30010736	30	2.0	30	100	0	120	43	10	0	46	1.37
30016949--30017004	26	2.1	28	86	6	80	53	0	21	25	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30018917--30019006	42	2.1	42	95	0	162	22	11	11	55	1.66
30019695--30019802	24	4.6	24	85	6	141	47	2	28	21	1.65
30025095--30025124	14	2.2	14	94	5	53	76	0	0	23	0.78
30028708--30028754	18	2.4	19	82	13	60	21	36	6	36	1.79
30041790--30042140	41	8.6	41	89	0	486	20	19	27	32	1.97
30047853--30048036	42	4.3	42	78	4	190	20	17	30	31	1.96
30049164--30049279	10	12.3	10	64	18	52	67	4	0	28	1.10
30049165--30049272	29	3.9	27	78	10	85	67	4	0	27	1.10
30049208--30049279	29	2.6	28	84	8	94	68	5	0	26	1.12
30049462--30049519	19	2.8	22	73	21	63	29	8	1	60	1.36
30049466--30049642	96	1.8	97	81	11	220	30	6	2	60	1.35
30052041--30052737	138	5.0	138	90	2	1058	40	8	5	45	1.58
30052041--30052737	278	2.5	276	90	3	1053	40	8	5	45	1.58
30060105--30060169	27	2.5	26	85	5	85	32	10	15	41	1.81
30064157--30064205	23	2.1	23	96	0	89	48	8	10	32	1.66
30066108--30066155	24	2.0	24	95	0	87	39	12	27	20	1.89
30067201--30067290	33	2.7	33	89	0	117	25	25	17	31	1.97
30070725--30070836	43	2.6	43	75	1	109	30	25	17	26	1.97
30078591--30078732	41	3.5	41	84	1	178	33	19	17	30	1.95
30078591--30078751	82	2.0	81	84	7	209	33	19	18	29	1.95
30080879--30080947	29	2.4	29	95	4	122	34	21	11	31	1.89
30084394--30084442	24	2.0	24	88	0	71	24	20	18	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30084418--30084597	43	4.2	43	86	1	236	31	25	17	26	1.97
30084417--30084595	86	2.1	86	88	2	261	30	24	17	27	1.97
30089049--30089096	21	2.3	21	92	0	78	45	10	29	14	1.78
30089179--30089216	19	2.0	19	94	0	67	36	13	36	13	1.83
30090875--30090987	7	15.7	7	72	15	52	44	32	1	21	1.63
30090873--30090943	29	2.4	29	81	6	81	43	36	0	19	1.51
30090887--30090938	15	3.6	15	80	14	56	40	40	0	19	1.51
30090875--30090987	22	5.2	22	74	17	94	44	32	1	21	1.63
30090868--30090987	14	8.4	14	71	15	66	45	31	1	20	1.61
30091107--30091183	7	11.0	7	80	5	84	51	31	0	16	1.45
30091294--30091836	40	13.9	40	67	8	175	27	20	21	30	1.98
30091212--30091826	195	3.2	194	82	3	772	27	20	21	30	1.98
30091679--30091836	80	2.0	80	84	2	210	26	19	23	30	1.98
30091682--30091847	40	4.2	40	80	6	183	25	19	22	31	1.98
30094431--30094469	11	3.5	11	82	0	51	38	53	0	7	1.30
30096897--30096925	13	2.1	14	93	6	51	68	6	0	24	1.13
30097862--30097895	11	3.1	11	100	0	68	61	8	0	29	1.26
30106897--30106965	33	2.2	31	87	10	95	20	26	21	31	1.98
30110123--30110168	24	1.9	24	82	8	58	54	10	0	34	1.36
30116258--30116334	37	2.1	37	100	0	154	31	15	23	29	1.95
30125323--30125389	23	2.8	24	80	11	75	32	17	25	23	1.97
30143256--30143610	176	2.0	176	100	0	710	38	16	10	34	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30148074--30148107	16	2.2	15	89	5	50	55	0	0	44	0.99
30166297--30166433	42	3.5	41	71	21	141	24	16	27	31	1.96
30166343--30166465	33	3.5	33	70	23	106	21	19	27	31	1.97
30166195--30166473	74	3.8	73	83	9	345	22	20	26	30	1.98
30172892--30173111	33	6.5	33	76	16	191	19	20	27	32	1.96
30180984--30181044	22	2.7	22	73	16	63	63	4	6	24	1.38
30181421--30181449	15	1.9	15	100	0	58	41	20	13	24	1.89
30181466--30181518	21	2.5	21	76	11	54	35	0	0	64	0.94
30181480--30181520	21	2.0	21	85	9	57	31	0	0	68	0.90
30201471--30201610	61	2.3	61	78	2	147	42	14	5	37	1.69
30205142--30205234	45	2.1	45	89	0	141	32	24	17	25	1.97
30205231--30205366	51	2.7	51	83	2	166	30	27	18	23	1.97
30205238--30205422	101	1.8	101	84	5	257	29	28	17	24	1.97
30214363--30214400	9	4.4	9	83	12	53	78	7	2	10	1.04
30214365--30214400	16	2.2	16	95	0	63	77	8	2	11	1.08
30215271--30215360	47	1.9	46	81	2	108	43	18	20	17	1.88
30216678--30217653	45	21.7	45	88	0	1396	29	15	23	30	1.96
30226611--30226892	138	2.0	138	97	0	537	43	13	11	31	1.80
30228904--30228941	20	1.9	20	89	10	60	60	5	0	34	1.19
30233456--30233495	20	2.0	20	100	0	80	35	15	25	25	1.94
30235288--30235336	19	2.6	19	83	6	55	36	0	46	16	1.47
30237138--30237172	16	2.2	16	89	0	52	37	2	25	34	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30239239--30239325	37	2.3	38	82	11	99	54	3	2	40	1.30
30239185--30239312	68	1.9	69	90	1	204	52	3	2	42	1.30
30248853--30248908	21	2.6	22	78	13	71	46	25	14	14	1.82
30248853--30248917	23	3.0	22	78	10	71	43	23	16	16	1.88
30249240--30249289	25	2.0	25	84	11	66	36	22	0	42	1.54
30249535--30249579	22	2.0	22	100	0	90	4	37	4	53	1.41
30265161--30265197	16	2.3	16	90	0	56	13	24	2	59	1.47
30267233--30267261	11	2.7	11	94	5	51	13	6	27	51	1.66
30267535--30267577	21	2.0	21	83	16	54	41	23	18	16	1.89
30273850--30273876	12	2.2	12	100	0	54	25	29	0	44	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185