genome.fa.s5.2.7.7.80.10.50.1000.98.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  98  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31183231--31183840	44	13.7	44	76	6	478	30	19	23	27	1.98
31183134--31183747	316	1.9	318	82	6	776	30	18	22	27	1.98
31184696--31184723	4	7.0	4	100	0	56	25	0	0	75	0.81
31185747--31185793	20	2.2	23	85	11	64	17	0	19	63	1.30
31187938--31187994	28	2.1	27	93	6	98	54	38	0	7	1.28
31188558--31188594	6	6.2	6	93	0	65	35	0	29	35	1.58
31190474--31190566	47	2.0	46	97	0	168	51	2	1	44	1.20
31191068--31191112	12	3.5	12	77	16	54	22	17	0	60	1.37
31191072--31191125	27	1.9	29	92	7	94	24	20	0	55	1.43
31191072--31191117	15	3.3	15	82	17	71	26	19	0	54	1.44
31191683--31191719	14	2.6	14	95	0	65	27	10	13	48	1.75
31191860--31191972	42	2.7	42	87	2	147	24	16	23	34	1.95
31196484--31196523	6	6.7	6	88	0	62	80	0	17	2	0.83
31200903--31201162	29	9.0	29	87	0	367	20	30	11	38	1.88
31206889--31206922	17	2.1	17	88	5	52	82	2	14	0	0.79
31207226--31207343	29	4.1	29	82	0	137	16	29	12	40	1.86
31207226--31207348	58	2.1	58	84	0	156	17	29	12	40	1.86
31207342--31207500	29	5.4	29	83	0	165	22	26	11	39	1.88
31207260--31207444	101	1.8	101	86	0	271	18	27	13	40	1.89
31207342--31207500	58	2.7	58	81	0	201	22	26	11	39	1.88
31213798--31213876	38	2.1	38	92	0	131	29	11	11	48	1.74
31215500--31215567	20	3.4	20	83	0	82	7	30	20	41	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31215522--31215605	20	4.2	20	79	0	87	10	33	21	34	1.88
31215540--31215628	40	2.2	40	86	4	117	12	34	20	32	1.90
31217887--31217946	18	3.3	18	88	0	84	35	23	10	31	1.88
31218649--31218701	19	2.9	17	78	16	54	43	1	0	54	1.11
31218642--31218690	25	2.0	25	95	0	89	38	2	0	59	1.09
31218644--31218697	25	2.2	25	89	0	81	38	1	0	59	1.08
31218686--31218742	18	3.0	18	78	12	51	42	0	1	56	1.10
31223636--31223693	22	2.7	21	82	10	64	41	17	20	20	1.90
31223645--31223693	22	2.2	22	88	0	71	42	16	20	20	1.89
31225670--31225761	43	2.1	43	93	0	157	33	25	15	26	1.95
31227689--31227753	32	2.0	32	96	0	121	40	16	15	27	1.89
31245133--31245159	12	2.2	12	100	0	54	37	0	0	62	0.95
31252512--31252568	29	1.9	30	82	3	71	50	7	15	26	1.69
31253849--31253887	3	12.7	3	83	5	51	71	0	0	28	0.86
31253849--31253886	16	2.4	16	91	4	60	73	0	0	26	0.83
31254364--31254455	19	4.8	19	89	5	150	38	15	9	36	1.80
31254341--31254455	38	2.9	38	89	5	167	38	15	9	36	1.80
31254341--31254455	19	5.8	19	85	4	140	38	15	9	36	1.80
31257323--31257407	38	2.3	38	81	2	100	43	11	14	30	1.81
31257341--31257414	38	1.9	38	91	0	121	37	16	16	29	1.90
31260398--31260475	24	3.2	23	71	20	59	37	17	10	34	1.84
31260416--31260496	24	3.2	26	70	25	73	35	16	12	35	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31260378--31260634	50	5.1	50	80	2	300	38	19	10	31	1.86
31261208--31261250	22	2.0	20	82	8	50	23	27	9	39	1.85
31273262--31273322	18	3.4	17	80	11	59	8	19	3	68	1.29
31274248--31274295	11	3.8	12	84	15	62	18	10	0	70	1.15
31274247--31274293	14	3.6	13	83	16	62	17	8	0	74	1.05
31274247--31274293	13	3.5	14	81	18	64	17	8	0	74	1.05
31274247--31274282	14	2.5	15	95	4	65	16	8	0	75	1.04
31274247--31274282	15	2.4	16	86	13	51	16	8	0	75	1.04
31276770--31276804	17	2.1	17	94	0	61	62	5	5	25	1.40
31278828--31278870	14	2.9	15	82	6	61	74	2	18	4	1.10
31278829--31278880	15	3.6	14	79	7	59	76	1	19	1	0.97
31282236--31282278	14	2.9	15	82	6	61	74	2	18	4	1.10
31282237--31282288	15	3.6	14	79	7	59	76	1	19	1	0.97
31284143--31284258	51	2.3	51	96	1	214	19	18	18	43	1.89
31286823--31287024	100	2.0	100	100	0	404	44	3	20	30	1.70
31287819--31287924	48	2.2	48	85	9	137	14	24	1	59	1.45
31287900--31287984	18	4.6	17	71	16	62	17	28	2	51	1.58
31294020--31294065	21	2.2	21	84	7	58	63	2	26	8	1.35
31294046--31294093	6	7.8	6	78	2	51	72	2	22	2	1.05
31294015--31294143	18	7.2	18	69	16	81	65	1	24	7	1.27
31295875--31295923	20	2.4	20	86	3	62	20	26	22	30	1.98
31299632--31299678	20	2.3	20	81	0	58	29	34	12	23	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31301375--31301457	30	2.8	30	77	0	103	28	26	15	28	1.96
31303523--31303566	22	2.0	22	95	0	79	34	4	36	25	1.76
31305331--31305412	38	2.2	38	97	0	155	24	10	28	36	1.89
31305427--31305488	32	1.9	33	83	3	81	35	14	27	22	1.93
31306543--31306577	14	2.5	14	85	0	52	45	5	34	14	1.68
31308926--31309394	236	2.0	236	97	0	884	26	18	16	38	1.92
31309325--31309463	69	2.0	69	95	0	251	20	18	19	41	1.91
31309740--31309781	12	3.5	12	90	0	66	78	2	4	14	1.01
31312622--31312666	23	2.0	22	95	0	72	37	22	17	20	1.92
31316013--31316059	20	2.3	20	85	0	67	21	12	36	29	1.91
31318737--31318818	38	2.2	38	88	0	128	31	21	26	19	1.97
31323584--31323657	12	5.7	12	71	16	51	8	12	4	75	1.16
31325486--31325550	20	3.3	19	73	16	51	38	16	21	23	1.93
31326816--31326849	18	1.9	18	88	5	52	8	35	2	52	1.47
31327894--31327960	13	4.6	14	78	17	57	7	10	7	74	1.21
31327894--31327978	14	5.8	14	72	14	57	10	11	5	71	1.29
31327910--31327986	15	5.3	14	73	20	61	14	9	5	71	1.28
31329592--31329656	20	3.3	19	73	16	51	38	16	21	23	1.93
31332178--31332401	79	2.8	79	82	8	231	25	27	21	25	2.00
31332178--31332401	40	5.7	40	83	6	244	25	27	21	25	2.00
31336654--31336838	101	1.8	102	89	3	293	24	17	27	30	1.97
31336661--31336838	51	3.5	50	78	9	166	24	17	27	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31343378--31343797	209	2.0	209	100	0	840	29	26	14	30	1.95
31346208--31346254	18	2.6	18	83	6	51	21	2	6	70	1.20
31355462--31355675	29	7.4	29	85	0	266	35	15	27	21	1.93
31355462--31355675	58	3.7	58	87	0	302	35	15	27	21	1.93
31370690--31370772	41	2.0	41	92	0	139	36	18	19	26	1.94
31372631--31372722	3	30.3	3	77	10	80	58	2	6	32	1.36
31372637--31372722	18	4.7	18	81	11	104	59	2	5	32	1.34
31374254--31374705	172	2.6	171	89	2	652	27	21	19	31	1.97
31374297--31374533	128	1.8	129	85	2	334	29	19	19	30	1.97
31374287--31374705	44	9.7	44	66	14	167	26	21	20	31	1.98
31374330--31374644	85	3.7	85	69	16	238	27	21	19	32	1.97
31384837--31384984	40	3.7	40	96	0	269	22	27	20	29	1.98
31407105--31407148	18	2.4	18	96	0	79	50	11	2	36	1.51
31407109--31407153	18	2.3	20	81	18	67	53	8	2	35	1.45
31407480--31407516	18	2.1	18	94	0	65	27	5	13	54	1.61
31407722--31407760	15	2.6	15	87	0	51	48	0	28	23	1.51
31408361--31408453	31	3.0	31	96	0	177	41	15	9	33	1.79
31410012--31410089	39	2.0	39	94	0	138	23	10	29	37	1.88
31411721--31412847	49	23.2	49	96	1	1977	32	6	29	31	1.83
31412968--31413043	37	2.1	37	89	0	116	22	18	32	26	1.97
31418677--31418702	12	2.2	12	100	0	52	69	7	0	23	1.14
31419253--31419307	21	2.7	21	77	2	58	23	23	25	27	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31426024--31426094	31	2.3	31	85	4	90	42	1	11	45	1.48
31427087--31427125	21	1.9	19	85	10	51	61	0	0	38	0.96
31430490--31430604	55	2.0	56	90	5	178	48	13	8	29	1.71
31432744--31432890	43	3.4	44	73	10	117	42	19	17	21	1.89
31435910--31435934	13	1.9	13	100	0	50	48	0	12	40	1.40
31437596--31437635	18	2.4	16	91	8	62	70	2	7	20	1.24
31444309--31444471	51	3.2	51	91	0	256	33	14	22	29	1.93
31444537--31444567	9	3.4	9	90	0	53	25	12	22	38	1.90
31444684--31444726	21	2.0	21	82	8	52	20	41	0	37	1.53
31445699--31445724	7	3.7	7	100	0	52	42	11	30	15	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185